GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 07:18:53, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:21194110-21194128
AAGCAAATAGTGGCTGACACACAGTAAGGG21194110CCCAATAAACAACTAGTATGGCTATATTAAACACTTCATTTGACAGGCC
chr1:36705422-36705440
AGCATTTGCTTAATTGCTTTGTCACTTCTT36705422TCCACTAATCAACTCATTTTACTTTTTTCGTGGTAAAATATGTATAACA
chr1:55606231-55606249
GGCTTCCTTCATATTAACAAAGTACAGTGA55606231CACAATACTCAACTCATTTTAAAAAAGAAGAATGGAAGAAAGGACTCAT
chr1:56494966-56494984
TGGTTCCTTTGAGTAGATACTTCCACCACT56494966CCCAATTTTCAACTTGTTTTATAGATATCTTCTGATTCCACATATCTCC
chr1:70362105-70362123
TTATTTCTTCTATCAAACTATATATTTGTA70362105CCCATTAATCAACCTGTTTCTTCATCTTGATGTCGATTACACAGATGGT
chr1:73316121-73316139
TCTATATTCTGGAACTAATGCTTAATCATC73316121CTCAATAATCAACTCAATTGTTGCCACTCCTGGAATGGTTTTCCCAAGC
chr1:76872753-76872771
CTCTCTCTCTCACCTTCTACCTGTGCCCCA76872753GCCAATAATCAAGTCATTTTTTCCTGTAAGGTGGCAAAATGTCGAGATT
chr1:96986041-96986059
AAATATCATGTCAGGAATAAGTAAATGTCA96986041CCAAATAATCAACCTGTTTCGCTATCTTTTCTTTTTTGGTTACTTGCTT
chr1:110949879-110949897
GGCTCGACACTGCACAACTGGCACAATCTT110949879CCCAAAAGTCAACCCGTTTTCTAAAACTTCCGCAGAACCACCCTGACCG
chr1:148886127-148886145
GTCTTTTTTCTTGTGGTTAATGCTATAGCT148886127CTAAATAATCAACTGGTTTACTGCTTTATCAATGCTAGATTTTGTTGAC
chr1:176669235-176669253
TTCCCCTTCTCTCATTTTCCCCCCTCACAC176669235CCCAATAACCAACTCTCTTTTATCTTTCTCTTCCAGCTCTCCTCTTCCT
chr1:188181633-188181651
TTATTTCTTCTGTCAGACTGTATATTTGTA188181633CCCATTAATCAACTTCTTTTCAGTCCCTCCTCTCTATTATCATTCTCGA
chr1:199924274-199924292
CAACATAAGAGTGGGTGAAGCACATTAAAC199924274CCCAATAATCAACTTCCTTAAGCATTTCCAAGTAACATAATCTCCTACT
chr1:241676565-241676583
TTAGTAAAATTACATTCTCAATATGCATTA241676565TCAAATAATCAACTGGTTTTAAAAAGATTTATATATAAAATAAAAAATC
chr1:243721918-243721936
TCTCAATAGCAACCACAGCTAGATATATTT243721918CCCAACAATCAAGTCATTTTTTGCAATCTTTGTTAGTTCTAACTTGATT
chr2:16552310-16552328
GATTTGATTCCTTCTAATTATATTTTTATA16552310CCCATTAACCAACTCCTTTCTTTCTCCCCCTCCACACTACCCTTCCCAG
chr2:22517422-22517440
ATTTGAAACAGCTTTGAGGCACCCAAATGC22517422ACCAATAGTCAACTAGTTTGAAGTATATGATTTTAGCCTAGTGGAGAAG
chr2:33737805-33737823
CTGACAAGTTTCATGATATTCATTTCCTCA33737805CCCATTAATCCACTCGTTTATTAATTTAGTGAATAATTTTTGAGTATCT
chr2:39433940-39433958
ACTGTCATGAATTAAGTGTCCATTAAGTGT39433940CACAATAATCAACTCCTTCTGCCTCCTTTTCTACTATGCTGTCAGGCCC
chr2:110413405-110413423
AGCTTGTGGGAAAGCCCAGGTGTACTGAAA110413405CAAAATAAGCAACTCGTTTTCAGAGTCAGACATCTTAGGGTTCAAATTC
chr2:117550406-117550424
TAGAGGTAGAGAAAAAAAATAAACATATCG117550406CCCAAAAAACAACTCTTTTTAGAGTCCTAGGGAGGCTGTCAGTTTCACA
chr2:119351144-119351162
CAGTCTCTTGCAAAGTCTCAGTGTCCACAT119351144CCCAATGATCAACTATTTTTTTTTCTTTAATCCCATTTACATTTAACTA
chr2:127576063-127576081
AAATTGTTTAATTTGCTTTGTGTGAGACAC127576063CCCACTAATCAACTCTCTTAGTCTTTGCTTCTGAAAATATAGAAGGAAG
chr2:146473106-146473124
GTAACTTTGGGAATTGTCCCGACATTGACA146473106CTCAATAATAAACTCATTTTGTTGAAATGATTACAGTGCATTTTGGAAA
chr2:152969523-152969541
ACTATCAACAATTGTTTCACTCTACATTTC152969523CCCAATCATCATCTCCTTTGCCCTCTCTATATACAGGACGGACAGCAAA
chr2:219666787-219666805
ACGGATGTGGGTTCTAACTATACTTTCTCC219666787CCAAATAATCAACTAGTTGCTTTAATGACATTTGTTCACTTATTTGTTT
chr2:220732945-220732963
ATAGGCCCAAACCACATTAGTCAATCTAGT220732945CCAAATAATAAACTAGTTTGTGAAGATGATTTTTTTTTTCTGTTTGGGA
chr2:225362878-225362896
TGTTCTTAAGACCACCTTTCTCCATAGTAA225362878CCCAATAATCAATTTGTTCTAAGTCAGTAGCAGACATCAACAGTACAAA
chr2:228664995-228665013
ACATGCCTTAAACCAAGATTCTATTATTCC228664995CCCAATAATCTACTCCTTCTTAAGTGCTTTCTGCCTGATTAAACTGTAC
chr3:2912479-2912497
GAGCACATGTAGCTGGCAGAACTGTATTTC2912479CCCAATATTCAGCTTGTTTCTTGGGCATTTCAGCTAAGCAGTCTGGACT
chr3:30391038-30391056
AGAAGATATTCTCTTTATAGTCTTGAGAAG30391038CACAATAATCAATTCCTTTAAGAGAGAAAAATGTGTTTTTTTCCAAACA
chr3:37257609-37257627
AAAAAAAAAAGAGAAAAAGAAATGTATTCA37257609ACCAATATTCAACTCATTTAAATGAGTTGTAGAGTGGTATATGATTACC
chr3:65572872-65572890
GATGCTCCTCGACTCACTTTGGAGTTATGT65572872CCCAATAAACCACTGGTTTACTGGGAACACACCTAACCTACTGAACATC
chr3:77897486-77897504
GATCTTATTTTTTCTAATTGTATTTTTCTA77897486CCCATTAATCAACCCCTTTTAATTCCCCCAGCCCCACCACTCTTCCCAG
chr3:80254925-80254943
TCTCCCTACTAACTAAACGGTATAATTTTA80254925CCCAATAATCAACTTCTTTTCTTCCTTCTGTCCGCTAGCCTTTCTAGAC
chr3:95162081-95162099
TTAGAATTGTTTTGATGGACAACTACTTCA95162081CCCAATAATCAAATTATTTTTCAAATATACTTCAAAATTATAATTGTCT
chr3:114193888-114193906
TGTCTCCTGAATAAAGTCCAAATTCCTTGC114193888CCTAATAATCAAGTCCTTTCACTTTCTGGTCCCAATATACTTTTACCGC
chr3:120639471-120639489
ATTTCTTGATTCAAAATATATATATTTGTA120639471CCCATTAATCAACTTGTCTTCATTTTCCCACCCTCCTTCCAGGCCTCTG
chr3:122173783-122173801
AACTTGACTCTTTAGCTTAATATTGAGAAA122173783TCCAATAATGAACTCTTTTCTATTTAGTTAAGAGTTCTTAATTACATTT
chr3:142779932-142779950
TTTTTTGTGTTGCAAAATTGAAACTCTGTA142779932CCCATTAAACAACTCATTTCCCTCTTCCTCCCCTGTCTCTCAGTATCAT
chr3:144584218-144584236
GCCATCAATAGCTTCAGGTGAAACATGTTA144584218CACATTAATCACCTCGTTTTGCTTTAAAAAGATGGTCATTTTCAATAGA
chr3:158767141-158767159
TATGGCCTGACTTTAATGATGCATTGCTGT158767141CTCAATAATAAACTCATTTGTCTAATTATTCTCAGGTGGTTTCATAAAA
chr3:190775915-190775933
GATTACCTCAAGATAGTTAATAATCAAACC190775915CCCAATAATCAACGATTTTTAAAAAGGACCCTAAAGGCAGCAAGAAAAG
chr4:17485364-17485382
CACATCACCAGGGAAGGAAAAGAAACACAC17485364CTCAATAATCAATTAGTTTGAGGAGAGCTGGTAGTCTTCATTCCATTTA
chr4:22394426-22394444
GTCTGATTTGAAAGCAGCAGGAAGGCCTAT22394426CCTAATAATCAACTCTGTTGCCTGCTAAGGCAACACTGTGTTCTAATAG
chr4:29096327-29096345
TAATCACACTCACATCCTCAACTATTATAG29096327CCCAATAATAAATTAGTTTTTAAGGGGTTTGGTGTCTGTTTCACTTTCC
chr4:32796432-32796450
GGGCCCTTAGTGAAAAGAAAAATGTGTAAG32796432CCCATTAATCAACTTATTTGATGTAGAAAAATGGCTCATTAGTTATTTT
chr4:38074375-38074393
TTTTTCATCTTGTTAAACTGAAACTCTATG38074375CCCAATAAACAACTCCTATTCCCCCTCTCCCAGCCCCTGGCAACCACCA
chr4:52895757-52895775
TACTAATTTTTCTAAGGGAAAATATCTCTT52895757TCCAATAATCAACTAGGTTTTTGCAAAGTATTTTTCTCTAATGCCCCTC
chr4:84763078-84763096
TATTCCAGGTTCATCTTGTACTCTCTCTAC84763078CCCAATAATGAACTCATTTATTTCTCTGAGTCCTCATAGACATATATTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CCCAATAATCAACTCGTTT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CCCAATAATCAACTCGTTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
4.440 | 4.429 | search_plus_done; http://172.18.8.78:28018/match?q=CCCAATAATCAACTCGTTT&k=3&no_gap=1&offset=0&limit=50
4.452 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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