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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 19:38:32, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:163977233-163977251
AGAATCTACTAAACTTGCACTTAAAAGTAC163977233CCTACGATATGAAACTATATATAAGTGAACTTGTATATGTATATATATT
chr2:164236590-164236608
TGAATGTCAGAGTGTACTTGCATAAACCTA164236590GCTAGGATACCCTACTATACATCTAGGCTATATAGTATGGGCTATTTGC
chr3:84146955-84146973
AAGTTTGGTAGAGCTGGTTAAAAATACAAT84146955CCAACTATACGCTAATATACAATATTACAGGTATAAAGTATGTATAATC
chr3:161476706-161476724
AAGATCAATTCAAAAAATACTTACTGAGTG161476706CCTACTATATGCTACCATATATTACCGATGCCTGGTACAGTAGTAGAGT
chr4:15362646-15362664
TAAGGATTTTCTCTTCCTCATCTATTATCT15362646TCTATGATAAGCTACTATATTTCTAATAAGGAAAAGCAATTCTATTTAG
chr4:59303997-59304015
GGACTGTGAAAAGATTTTACATGATATTAT59303997ACTATGATACCCTACTATAATTTAAAATAGTGGATTTTTTATTTTACTG
chr4:88291205-88291223
AAAACTCTGAAAAGAAATTAAAATTTTTTT88291205CCTAAGATAGGCTACTAGAGCTAGAATAAATTATTTTCTGTGGCTGTAG
chr4:162263788-162263806
GTTACGTTACGTTACGTTACGTTACGTTAC162263788GCTACGCTACGCTACGATACGATGTTATGTTATGTTATGTTATGTTATG
chr4:167971455-167971473
TGAATTATTTTGATAAGCCATTGCTAGTAC167971455CCTATGATTCTCTACTATACCTGCATAAAATAACAAATTTTGGAGTTTG
chr5:23242572-23242590
AAGAAACAGGAAGCCAAGTGCCCTCTCATT23242572CCTACGATCAGTTACTATAGGAAGAACCTTTCACTGAGTCAGCTGGTAT
chr5:25972857-25972875
AGCAAAATATGAAAAAGACAGGATAAGCAT25972857GCTACTATATGCTACTATATACTAAAATAAAAAAGCATTTATAAAAAAT
chr5:121152950-121152968
AAAAAAGAAGACTGAGGTGGAGGAAGACAC121152950CCTACTATATGCTGCTATATGTGAGAAGTAGGATGAGGACTAGTCACAA
chr5:130341147-130341165
AATCTCAGAAATCACCACTAAAGAACTTAT130341147CCTAAGATAAGATACTATAACTAAAAACCACCTATATGCCCAAAACTTG
chr5:146373420-146373438
GTAAGTCACATATAAACTAGATTCTGGCTC146373420CCTACGTTAGGATACTATAATAGTTAGTAGCTGTTCTCTAAGGATCCAG
chr6:112096250-112096268
CTAGCTGTTTACAAACTTAAATGAGCTATG112096250CCTACGATACCCTAATATGCATCTGCACAAGCAGCCTGCCATCAGAGGA
chr6:132411764-132411782
TAATGAAGTACCTGTTACTATATTTGCTTT132411764CCTACCATAAGCAACTATAAAACTGGACAATATATAGGCAACTGATCTC
chr6:159533081-159533099
ACTACCGTACACTACCGTAGGCTACTGCAC159533081ACTACTGTACGCTACTATAGACTACTGCACACTACTGCACACTACCGTA
chr6:159533261-159533279
ACTACAGTACACTACCGTAGGCTATTGCAC159533261ACTACTATACGCTACTGTAGACTACTGCACACTACTGTAGACTACTGCA
chr6:159533513-159533531
ACTACTGTAGACTACTGTACACGACTGCAC159533513CCTACTATAGACTACTATAGACTTTATAAACACTGCACACTTAGGCTAC
chr7:142185035-142185053
GAGATCTACTGTACAGCCTTGTGTCTGTGG142185035ACTACGATACTCTACTATATACTTAAAAGCCTGTTAAGAGGATAGATCT
chr7:143748782-143748800
CTTTTTGCCATAAGTATATGCTGGTAATCC143748782CATACCATATGCTACTATAAGAGAGTACTTGTAATCACACAGAATAAAT
chr8:18740288-18740306
CTTAGTGCTCCATACCATATATAGCTAATA18740288CCTACCATACTCCACTATACAGATATATGGATATATATATACATATATA
chr9:109171622-109171640
ATTAAAGCTCAGATAGGCCAAGTGATTGAA109171622CCTACAAAACGCTACTAAATACCAAATCTGAGATTTGAATCCAGGGTTT
chr9:110212560-110212578
GAGATTACAAGAATGAGCCACCGCGCTCGG110212560CCTACGATACGATATTATTAACTATAGTCCTCATGAAGCATATTAGAGC
chr10:2528853-2528871
TACATGAAGAAAATACTGGAAATAGCCTTC2528853CCTATGATACGATACTATTAGCAGTATAGTATTGAAGTGAATTTTGCTC
chr10:26979726-26979744
ATGTATTTCCTAATTTAATCCTACACCAAC26979726CCTACGATACTTTACTATTTGTCTTAAAATTTGTTCCTGAGCAAACCAG
chr10:97641427-97641445
GTTAGAATGAAAAAAGATAACTTTTAAAGA97641427CCTAGGATAAGATACTATAATTGACCACAAATTAGAACTGTGCTTCCTA
chr11:69466863-69466881
GCAGGGTCGGGAAAGGCCACCTGTCCCACT69466863CCTACGATACGCTACTATAAAGAGAAGACGAAATAGTGACATAATATAT
chr12:65455078-65455096
AACAGGAACTTAGTCTTATTCAACTTTCAA65455078TCTACAATACACTACTATATACACTACTGTATAACACTGTTCGGCTGTA
chr13:105953951-105953969
GTACTGAGTTGTTCTAAATTAATTTGTTTT105953951CCTACAACATGCTACTATATTTAATGCTTGTGACTTTGAGAAACCATAA
chr13:106205302-106205320
TATTTAAGTTTTAGAATTCTATTGGCAAAA106205302CCTACGATATCCTAATATAAAAATTTTAATTCATATTAAGCTCAACAAA
chr17:13169450-13169468
CCAAAGTTCTAATTAGTATGACAGTGAAAT13169450CCTACGATTCCCTACTATAGCTAAAAATGGTTTTGCTCTTAAGATCTAA
chr18:33579035-33579053
TCTTTTCTGACTCTGGCCTCAAGCTAACTT33579035CCTATGATATACTACTATACAAGTTATTTCTGAATTACTACTGGATTGT
chr18:56536137-56536155
AATGTACTTACACAAACCTAGATGGTGTAG56536137CCTACTATAGCCTACTATATACCTAGGCTATATGGTGTAGCCCATTGCT
chr20:49786178-49786196
CCTTTTCCTGCTTCTTTGTATGTTTAGTGA49786178CTTACGATTCGCTACTAGACTTCATGAATGATATGTTGTAGAGATTCTG
chr22:50488523-50488541
AGACGCACACGCCCTGAGCTGAGACGTGCG50488523CCTCCGATACGCTACCATTGACCCGGGCGCCTTCATCCTCGACATCCGG
chrX:52980755-52980773
GAATAGAATAGGATAGATAGAATAGAATAG52980755GATACGATACGATACTATACGATACTATACGATACGATACGATACAATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CCTACGATACGCTACTATA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CCTACGATACGCTACTATA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
1.223 | 1.213 | search_plus_done; http://172.18.8.78:28018/match?q=CCTACGATACGCTACTATA&k=3&no_gap=1&offset=0&limit=50
1.232 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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