GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 14:54:07, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:9228895-9228913
GCACAGTTCCCTGTAGCCCCCATCCGGGGT9228895CCTGGTACTCTGTAAAGGCTGCCAGACCTGGGGGTGAACCAGTGATCTG
chr1:9461714-9461732
TAAGTACCGACGCCTAGTGTCTAGACAATG9461714CCTAGCACACAGTAGATGCTCAAAGAATGCAGAGTGAATAACCAAGCTC
chr1:15856410-15856428
CTTTAAATCATCTCTAGCTTACTTATAATA15856410CCTAATACAATGTAACTGCTGTGCAAATGGTTGTTATACTGTTATTGTT
chr1:19922567-19922585
CTTTAAATCATCTCTAGGTTACTTATAATA19922567CCTAATACAATGTAAATCCTAGGTAAATAGTTGTACTGTATTTTAAATT
chr1:23478178-23478196
AGTTGTAAAGATTAAAGTGTAAGTCAAGTA23478178CCTACTACACAGTAGATGCTTAAGAAATGGTAGATAATGGCCAGGTGCA
chr1:25134897-25134915
TATACTTTAAATCATCTCTAGGTTATAATA25134897CCTAATACAGTGTAAATGCTATGTAAGTTGTCATTACACTGTGTTTAGG
chr1:32411113-32411131
ATACTTTAAATCATCTCTAGATTACTTATA32411113CCTAATACAGTGTAAATGTTATGTAGTTGTTATACTGTATTGTTTAGGG
chr1:33482697-33482715
ATACTTTAAATCACCTCTAGATTATGTATA33482697CCTAATACAATGTAAATGCCATGTAAAGAATTGATATACTGAATTTTAA
chr1:34531309-34531327
GGTAATTCATGGAAAGCCTTTAGCACTGTA34531309CCCAGGACACAGTAAATGCTCAAAAATAGTTTAAATTCCTATTATCATT
chr1:35250267-35250285
GTATTGAACAAGTCAGAACTCAGAACACTG35250267CCTGGTACATAGTAAATGCTCAATAAAGTCACCTATTCATTCATACGAT
chr1:36313232-36313250
CTTTAAAAGATCTCTAGATTACTTATAATA36313232CCTAATACAATGTAAAGGCTTAAATAGTTGTTATACTATATTTTAAAAT
chr1:36313337-36313355
TTTTAAATATTTTTCTAGGTTGCTTTAGTA36313337CCGAATACAGTGTAAATGCTATGTTTTATTGTTTTTAATTTTTTTCATA
chr1:36657040-36657058
TACTTTGTAATCTCTAGATTACTTATAATA36657040CCTAATACAATGTAAATGCCATGTAAATAGTGTATTATTTTTAAAATTT
chr1:37886599-37886617
CTTTTGATCATCTCTAGATTACTTATAATA37886599CCTAATGCAATGTAAATGCTATGTAGCTATACTGTATTTTTATTTGTAT
chr1:38013864-38013882
CTTTAAATCATCACTAGGTTATTTATAATA38013864CCTAATACAACGTAAATGCTATATAAATAGTTGTTATACTGTTATTTGT
chr1:42907175-42907193
CTTTAAATCATCTCTAAATTACTTATAATA42907175CCTAATACAAAGTAAATGCTATGTAAATAGTTGTTCTACTATATCATTT
chr1:47602892-47602910
CGCAGCGGTGCCCACACCCCTAGCATACTG47602892CCTGGCACACAGTAAATGCTCATTAAATATTTGTGAGGTACATGGACAG
chr1:47995788-47995806
ACTTAAAATCATCTCTAGATTACTTAGATA47995788CCCAATACAATGTAAATGCTATGTAAATAGTTTTTACACATTTGTATTA
chr1:51368425-51368443
CTTTAAATCATCTCTAGATTACTGATAATA51368425CCTAATACAATGTAAATGATATGTAAGTAGCTGTTATACTGTATCTGTT
chr1:52248785-52248803
ACTTGAGTCATCTCTAGATTACTTATAATA52248785CCTAATACAATGTAAATGCTATGTAAATAGTTGTTTCACTATTTATTTG
chr1:53375365-53375383
CTCTAAATTGTCTCTAGATTACTTACAATA53375365CCTAATACAATGTAAATACTATGTAAACTGTTGTACTGTGTTGTTTTTA
chr1:54529439-54529457
TTTTGGATAAGGGATACTCAATCTGTAATA54529439CCTAATACAATGTAAATGCTTTGTAAGTAGTTTTTATACTGTATTGTTA
chr1:55336247-55336265
CTTTAAATCATCTCTAGATTTCTCACAATA55336247CTTAATACAATGTAAATGCTATGTAACAGTTAAGGAATAATGACAAGAA
chr1:56412841-56412859
ATGTGAAGTGCAAAGAACAATATCTGTGTA56412841CATAGTACACAGAAAATGCAGTGATTTTTTTTGCATCTTTCTCTTCCTT
chr1:58212376-58212394
CTTTAAATTATCTCTAGATTACTTATAAGA58212376TCTAATACAATGTAAATGCTATGTAAATGGTTGTTATATTGTATCATTT
chr1:59310849-59310867
TCCTGTATACTTTAAAGCATCTCTAGATTA59310849CCTAATACAATGTAAATGCTGTGTAAATAGTTGTTATACTGCATTTTTT
chr1:62721861-62721879
AAGATTGGATACCCCTGACTTAGAATCATG62721861CCTAGTACACAGTAAACACTCGGTAAGAGTTCACTGTTATTACTATTAT
chr1:63023363-63023381
TCAAATATAAATAAAGCACATAGCATTATT63023363CCTGGTACACAGTAAATGCTATGCAAGTGTTTGCAATTACTGTTATTAC
chr1:63943737-63943755
ACTTTAATCATCTCTAGATTACTTATAATA63943737CCTAACACAATGTAAATGCTATATAAATAGTTGTTATACTATATTGGTT
chr1:68455642-68455660
TTACAGCACCGTAGGAAATTAATACAATGT68455642CCTATTACACTTTAAATGGACTCTCTGATGATACCACTTTTTATCTTGC
chr1:70894793-70894811
AACTCCCAGCCGTCTAGATTTCTTGTAATA70894793CCTAATACAATGTACATGCTTTATAAATGGTTGTTACACTATATTGTTT
chr1:71601564-71601582
GTGTTGGCAAGGATGTAAAGTAAAGGGAGC71601564TCTTGTACACTGTAAATGAGAATGTAAATTGGTACAAAAATTATAGAAA
chr1:72717283-72717301
ATGTACTTCATCTCTAGATTTCTTATAATA72717283CCTAATCCAATGTAAATGCTATGTCAATCATTGTTATACTGTATTGTTT
chr1:73541744-73541762
CTAAATTCAACACATGTTCGTGGAAAAACT73541744CCCAGTACACTGAAAATACAAGGAAATATTCTCAACATGATAAACAGCA
chr1:74839733-74839751
CTTTAAATCATTGAAAGAGTACCTATAATA74839733TCTAGTACAATGTAAATGCTCTGTAAATAGTTTTTGCACTATATTGTCT
chr1:77308727-77308745
TTTTAAGTCATCTCTAGATTATTTATAATA77308727CCTAATACAATGTAAGTGCTGAGTAAATAGTTGTTATGCTGTATTGTTT
chr1:78829170-78829188
CTTTAAATCATCTCTAGATTACTTATAATA78829170CCTAACACAATGTAAATGCTATGTAAATAGTCATTATACTTTATTGTTT
chr1:81345471-81345489
CTTTAAATCATCTCTAGATTACTTAAAATA81345471CCTAATACAATGTAAATGCTGGGTAAAAAGTTGTTATATTGTATATTTC
chr1:81537919-81537937
TCCTGCTTTTGGTTGACATGCAAACATATG81537919CCTCCTACACTGTAAATTCTATTGATGGTTCTGGTGTCAACAGCAAGTG
chr1:83759099-83759117
CCTCAAATCATCTCTAAATTACTAATAATA83759099CCTAATACAATGTAAATGCTGTCTAAATAGTTGTTATACTGTATTGATT
chr1:87154328-87154346
CTTTAAATCATATCTAGATTACTTATAATA87154328CCTAATACAATGTAAGTGCTATATAGTTATTATACTGTGTTGGTTTTTA
chr1:87623010-87623028
CTCTTAGTGTGGGGCCCGTCTCAGCCTCTA87623010CCTTGTACCCAGTAAATGCAAAGGGCTGTGGAAATTGCACACAATTCAC
chr1:87976966-87976984
CTTTAAATCATCTCTACATTACTTGTAATA87976966CCTAATACAGTGGAAATGCTATGTAAATAGTTGCTATATTGTATTTTTT
chr1:89259459-89259477
CTTTAAATCATCTCTACAGTAATTATAATA89259459CCCAGTGCAATGTAAATGCTATATAAATTATTATACTGTATTGTTTAGG
chr1:89530544-89530562
ATAGATAATGTCAACAAAGAGAAAGACTAT89530544CCTAGTACATTTCAAATGCTCAGTTTAGCCCCTGTCTACTGGTGCCTAA
chr1:90868357-90868375
TACCTCCCCGAGAAATGCATCCCTCAAGAA90868357CCTAGGACACTGTCAATCCATTTCAGTCACTTTTTTTCCCTGTAATGTG
chr1:91871261-91871279
AGGGTTAAATAAAATAATATTTGCAGTAGT91871261CCTACCACACAGTAAATGCTCATGAATATTAATTTCTTTCACCTTCTCT
chr1:91958340-91958358
ATTTTAAATCATTCTAGATTACTTATAATA91958340CCTAATACAATGTAAATGATATGTAAATAGTTGTTATACTGTATTGTTT
chr1:93024684-93024702
CTTCAAATCATCTCTAGATAACTTATAATA93024684CCTAATACAATGTTAATGCAATATAAACTGTTATACTGTATTGTTTAGG
chr1:93987174-93987192
CTTTAAATCATCTCTAGATTATTTAGAATG93987174CCTAATACAGTGTAAATGCTATGTAAATACTTGTTAGGCTCTATTGGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CCTAGTACACTGTAAATGC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CCTAGTACACTGTAAATGC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
4.682 | 4.672 | search_plus_done; http://172.18.8.78:28018/match?q=CCTAGTACACTGTAAATGC&k=3&no_gap=1&offset=0&limit=50
4.694 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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