GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 10:55:31, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:28058016-28058034
GGATTACAGGCATGAGCTACCGTGCCCGGC28058016CTAAATATTGACAAAATATTTGATCATAGTGTCTTTTTCCCCACCTCTG
chr1:36451913-36451931
CCTGTCAGTAGCAGAATGAATAAACAGCAC36451913GTAAATAGTTACATAATATTGTGGTGTACTACATAACAGTTAAATAAAT
chr1:50935578-50935596
TTTAGGGATACTGAAAAATTTCAAATAACC50935578AGATATAGTGACATAAAATAACTGAGGGGAATGGAACAAGCTCAGCAGT
chr1:74557926-74557944
GATAAAAACAGTCAGTCACTAAGTACTGAG74557926TGAAATAGTTCCATAATATCAGTCCTAGACTGTATACCTCTGGAGTTTT
chr1:83987863-83987881
TAATGAAATACTTATTTAGACTTGTCATTA83987863CGAAATAGTGACTTGATCTGTTAGAATAATCAAAAATGTATGTTTACCT
chr1:84511381-84511399
AGTGAGAAAAAAACTAATGAAGTAATGAAG84511381CAAAGGAGTGACATAATATGCTTACACATTTTTTATCTTTAAGGAATCT
chr1:85292222-85292240
CAGCTAACACCCCTGAAAATCATGATTCAT85292222CCAAACAGTGACATACTATACAGCTATTGAAAATAATAATATTGATATG
chr1:100664257-100664275
GAGAGAAGTTATAACTCAGAGAACTGATTT100664257GGAAATAGTGACATACTGTGTCTTTTTGTTTTTTCTCCCTATCTCCTCT
chr1:103917525-103917543
AAATCTGATGGAGAAACAATTGTATTTTAA103917525AGAAATAGTGACAGAATACTTTCCACAACCACAAAATACCCAAGTCCTC
chr1:105998913-105998931
AGCTACTTAATGAAGAAAAACAAATAACCA105998913ATAAATAGTGATATAATATTTGAACTCTATGCTATCCTAGATTCAGGCA
chr1:108385483-108385501
CCATAGCTAAGAAACAGTCTCTCCAATGAG108385483AGAAATATTAACATAATATGGAAATTAATGATGGTTAATTTCATTAATA
chr1:117820972-117820990
AAACAATAAAGGAATTTAAAGCCAGAATTA117820972TGAAATAATGAAATAATATAGTGATAACTTTGGGGACAGGAGTGAGGGT
chr1:146748985-146749003
AGTCCATCAAAAAACATAAGTGTTTAAGAG146748985AGAAAAAGTGACACAATATTAGAAGCAGAGTTACTAAGTTTGTAATTAG
chr1:151844858-151844876
AAATTGTCAATATTTGACCATTCTGTTCTT151844858CGAAATAGTGATTTCATATGGTTCAGCTTAAATTTCTAATATGGGGAAA
chr1:153033534-153033552
AAAATGCTAAAGTAACACATTGTTAATGAA153033534AGAAATAGAGACAAAATATCAATTTCAAGTTGTTTATGGTTAAGAAAGA
chr1:154090446-154090464
TGTAAAACTTGACTGGTGAAATAAAGTTTA154090446CAAAATAGTAACATAATATAATAAATTATTTTTGGACACATTAGAAACT
chr1:158855482-158855500
AAGTTAAATTTAAGTACAAATGATTAAAAT158855482GGAAATAGTGACATAATCAGGCACACAGACATATATATGCACGTAAATC
chr1:164692411-164692429
CCCAGATTGGGCATTATGCATCTGTCACCC164692411CCAAATAGTGAAGTAATATACTGGACATATTGGACACTCCTACTAAAAC
chr1:165782914-165782932
ATGCTAACAATAAATCAACAAAAAGGAAAT165782914CCAAATAGTGACATAGTATTAAAAAAAAAAACACCAAAAAACGGAGGCC
chr1:170211754-170211772
TTTACAAATGATTAATTCACAGTGTTGTGA170211754AGATTTAGTGACATAATATTTTAATATGTAAAATAACTAGGCCTATTGC
chr1:176060980-176060998
CAATAAATGTAAATGGAAACAATCACTAAT176060980AGAAATAGTGACATAATAGATTTAAAATAAAGGTATGCTATCTGCCAAA
chr1:179006531-179006549
TTAACCTGCCCTCACTTAGAATCTGCAGAA179006531GGAAATAGTGAAATAATAGAACCCTTCAGTTCCCTTAATATGAATTTAT
chr1:182938382-182938400
AAGGTTCTTGCAGAAAAGAATCTCACCATC182938382CTTAATAGTTACATAATATTTTGTGTGTACCAATATTGTACACTTATCA
chr1:185256569-185256587
AGGAATTGGAATAATTCCTCTTGGAAAAAA185256569AGAAATAGGGACATAAAATATTTGTACTATCAGAGGAAGAAGGGAAAGA
chr1:188686351-188686369
GTTCCAGAAAGAATATAGTCTTTTATTCTA188686351AAAAATAGTGACATAAAATTACGTATATGTGTGTGTGTGCGTGCATACA
chr1:190537868-190537886
ACCCACAGTGGGAAAATATCTGTTTTAAGT190537868CAAAATAGTGACTTAAAATATTAACCTTCGGGATTAGATATTTACTATT
chr1:191852687-191852705
TTATGTCTTCTGTTTGCAATTGAATGTTAC191852687CAAAATAGTTTCATAATATATATAATTTTGAGAACCCTGACTTTCACAT
chr1:192016288-192016306
AAATAGTAACAAAAATTCTGTAGTCATTTG192016288CAAAATAGTGAAATAATTTCTGTTCAATTATTAGTGAATGAGAATAAGT
chr1:193826630-193826648
CCAAAATGTTGAATTAACTACATTCTCATT193826630CCACATAGTGACATAATATTGAACTATCTATGTGACTGAAATTTGCAGC
chr1:196549754-196549772
TAATACTCATTACTCAGTTCTGAGCAAAAC196549754TGAAATAGTCATATAATATGCATACATGGTATTGCTCTAAACAAAAATA
chr1:196887393-196887411
AACATGAATAAAAATAACATACAGTTAAAA196887393GGAAAAAGTGACATAAAATATTATGCAAAAACAGGGGATACCATTGAAT
chr1:205353567-205353585
TCTTATACAAATAACCTTGGTTTTTATTCT205353567AGAAAAAGTCACATAATATGCCAAAAGTTCTTGGCACATTAGGTAGTTT
chr1:207505408-207505426
AAATAGATTTTTATTATAAGTGTTATACAT207505408AGACATAATGACATAATATTAAAGCCAGGGAGATGAGTACAAAATGGGA
chr1:212228393-212228411
CTGGTACTCACCTCTTTCACAGAGTGGAAC212228393CAAAATAGTGAGATATTATAGTGACAGTGAGATCGTAGATAATCACCCT
chr1:215101420-215101438
TACCAATTATATTTCTAATGATATCTAGAA215101420CCAAGTAGTGCCATAATATTTCTAACAGTATTTAGAACCAGGTGATGCC
chr1:216078672-216078690
GTTTTGTTTTTTGCCTGTGTGTGTGCATTT216078672CAAAATAGTGAAATAAAATGCTGCATTAAAATATCAAATAAGCCTGTAA
chr1:221303664-221303682
TCCTTTTGCTTCCATTTTTGGAAGAGATTG221303664TGAAATATTGACATAATTTACTTTTTAAATATTTGATATAATTCACCAG
chr1:222385505-222385523
TTTTTTTTTGCTCATTCTACTCAGCCACTA222385505AGAAATAATGAAATAATATCTTTTACAGCAACTTAGATGGAACTGGAGG
chr1:222605732-222605750
CCTGATAATTCTGCCTGTTCCTGCAATTCA222605732CCAAATTATGACATAATATTTGCACAGGACAAAGGGACATAAAAAACTG
chr1:232035642-232035660
TTTTATACCCCTCTCTACTCCCCTGCTTCC232035642CAAAATAGACACATAATATATACAACTAGATTTATTGGAGCTTCTGATT
chr2:1795049-1795067
ACCATACACCATCCTCCTAAAACAAACAAA1795049CAAAAAAGTCACATAATATTTCCAAGCATTGTTCAAAAATAAAGCATTT
chr2:15591956-15591974
GAAGAAGAGGTTCTTCGAAGGGATTCAGGC15591956AAAAATAGTGACATAATCTCCCATCTCAAACTAGAGTTTATCTTCATCC
chr2:28234450-28234468
TAAAGTCCAGGGAGCTCAGCTAAGATGTGG28234450AGAAACAGTTACATAATATAAATCATTGTAGCCCAGGGGCCTATTCTCA
chr2:40535134-40535152
CTAAAAGAGTCAGAAAAATAAATAAATAAA40535134TGAAATACTGAGATAATATGAAATGGAATGAAATAAAATAATATAAATA
chr2:42230325-42230343
CCTAAGCTGTGCCTAAATTCCTGATCCCAT42230325AGAAATAGTGAGATAATATTTGCTGTTTTAAACTGCTACGTTTGGGGGC
chr2:53380495-53380513
AAGCAAGTTTAGGTTTTATACTTCTATCTA53380495TAAAATAGTGCCATAATATTGATATGGCTGATATTTAAAATATTATTAA
chr2:57153613-57153631
ATGTGCCTTGCTACATAAAAGAAGCTGCCA57153613GGAAAGAGTGAGATAATATATGCAAATATATACTCAAAGAGGAATGAAT
chr2:57217424-57217442
AGGGATGCAGATCTCTTTTTCAGATGATAA57217424CTAAATATTGACATAATAAAATACATCAATAAAAGTAAAATTATTCCAG
chr2:57550178-57550196
TTATTTTAAAATATATATGGCTGTTTAATG57550178CAAAATAGTGACAACATATTATGGAGTTTATAAAATACATTGAAGTTAA
chr2:57916282-57916300
AATGTCTACATCAGGAAGTTAGAAAGATTT57916282CAAATTAATGACATAATATTGCACCTAAAGGTACAAGAACAAACTAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/CGAAATAGTGACATAATAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : CGAAATAGTGACATAATAT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
4.537 | 4.527 | search_plus_done; http://172.18.8.78:28018/match?q=CGAAATAGTGACATAATAT&k=3&no_gap=1&offset=0&limit=50
4.549 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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