GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 02:43:30, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:16409255-16409273
TGGTGCCCGGGGCACCTCTGCCACCATAGC16409255TCCCATCTCTCCTTAGTTGGGAGAGCCCAGGTCAGAGGTCTAGGCTGGA
chr1:68737953-68737971
AATATTTTTGTTAAAGAAAAATTCAACTCT68737953GCCAATCTCTACTTAATTGAGAAATCTGTGTGAGCTTTACCCTTGGCTA
chr1:74659028-74659046
GCAGTTAAAAATAAATCAGTACCATTATCA74659028GCAAACCTTTCCTTAGTTTGTATCAACTAAAGTACCAATTTAAAAATTA
chr1:77054900-77054918
TGCTTTGGTTTCTGATATTTCATGCCATTT77054900GCAAATATCTCCTTATTTGTTATTCTGGGGAGTTTTCATTAGGGCTAAA
chr1:79439209-79439227
AAAATACAAATTAAATAAAATGTAACACAC79439209GCAAATCTCTCCTAAGTGATATACGATGTATCATAGGAAAATAATTAAA
chr1:82762546-82762564
GGTATAGAGAGAGGGCTGCAGGACTCATGG82762546GCAAATCTCTCCTTAGTTTAGAGAGTGCTAGGAGGAGGGTAGCTAAAGA
chr1:101190338-101190356
AATGGGAATCTACAGCACCTTTCTGGAAAT101190338GCAACTCTCACCTTAATTGCTATGAGGATGGAAGATTCTGGAATTTATG
chr1:116607754-116607772
ATTCTGTGAAAGAACCCAGGGGACCCCTAC116607754GCAAGTCTCTCCTTGGTTTGATTTGTGACTTTCCACAGCCAAGACTTTT
chr1:121268680-121268698
TTTCAGACATTGCCAAATGTCTCCTGTGGG121268680GCAAAACTACCCTTAGTTGAGAGCCACTGAACAAAATCCCAACTCTTAT
chr1:159197742-159197760
CAGACTATTTCCCTTATCCTATTTACTACA159197742GCAAATCTCTCCTTAGTTGATGAGACTGTGTTTCTCGCTCTTTAAAACC
chr1:173407772-173407790
ATATATAGAATTAAAAAGCTTTCCATACTG173407772GCAAATCTCTTCTTTGTGGTTTCTTCAGTGGCATTTATGCTTAGTGAGT
chr1:175133975-175133993
TCTTGCATTATTAGCATTTCCAGAAAACAA175133975TCAAATATCTCCTTAGTGGCATGAATTAAAAGTGAGAACTTCCATGGAA
chr1:181078558-181078576
TTCATTAGACTCCTTAGCATCTTCAGGGAT181078558GCAAACCTCTGCTTTGTTGGTTTATGTCTGTGTGTGTCCTGGAATAACC
chr1:181117965-181117983
GAGGTTACCTCCCAGGAGCTGGGACGAATG181117965CCAGATCTCTCCTTAGGTGAGGCCAGATTCCTTACTCACACCGTGGTGT
chr1:181151709-181151727
GCTACACTCAACTCGTATTGGACTCTGAAG181151709GCAAAACTCACCTTTGTTGTGTTGAGCCACTAAGTTTTGGGGGACATCT
chr1:187003182-187003200
TATAAGGACTCAAATTACCAACTGAACTTT187003182TCAAATCTCTCTTTAGTTTACTGAATACGTTGATTAAACTAAGCTTAAT
chr1:210764858-210764876
TGTGAATAGTACTACAGTAAACATGGGAGT210764858GCAAATATCTCCTTAATTTACCGATTTCCTTTCTTTTGAGTATATCCCA
chr1:210911584-210911602
TCTTCTCCTTCAATGAATCTAAGCTTTTGC210911584TCAAATGTCTCCTTACTTGTGAAGGCTTCTCTGGCCACTCTACGTCAAG
chr1:210970574-210970592
TACTGGGTTAGATGTGCCTCCCACTGTACT210970574GCAAATGTCTGCTTATTTGTTCATCTCCTACACTAGACTGGGAGCCCCT
chr1:223911496-223911514
CGGTCTCCAGCTACATCAGATGCCTGAAGA223911496ACAAATCTCTCCTTAGCTCTCCCTGCCCCCTCTCCAGGAATAGGAGCAG
chr1:241786597-241786615
CTAAGTCAGGCTAATTTATCTCAACAGTTC241786597TCAAATCTGTCCTTTGTTGTCCTGACTACTATTGCCCTAATTCAGACTC
chr1:242686828-242686846
GCTCGCTTTTAGCCTTTCTCCTTGCAACGC242686828GCAAATCTCTCCCTAGTTGGGCTCAAGTAGAGAGGATCACCAACTGCTC
chr2:3631866-3631884
AAATGGCCTAAGCTTCCTCTTGAAAGTAGA3631866GCAAATCACTCCTTACTTAGCTTTTAAATCATTATCTGACAGAACTCCC
chr2:7218810-7218828
TCTCTGTTCATGCTCTTCTTATACTTTACA7218810ACAAATCTCTCCTTTTTTGTCTTGAACTCTTATCTCCAGAATAGTGATG
chr2:31259520-31259538
TTACTGCCTACTGTTCTTTCACTGCAACCT31259520GAAAATCTCTCTTTAGTAGTTCTTGTGGGGCAGTTCTAAAACAATTTCT
chr2:33072097-33072115
TGTCTCAATCTTTACTATCAAAGAGGAGCT33072097GCATCTCTTTCCTTAGTTGCATGCCAAAACATTCCAGAGAACAGCTGTG
chr2:34405784-34405802
ATTCTGACTGCTTCACCTACTAGCCATTCT34405784GCATCTCTCTCCTTTGTTGTGGTCATTCTGCTCCCTTAGACATCAAAAT
chr2:64913842-64913860
CTTCCCCCAACCATGTGAGAGAGCCTGGAA64913842GTAAATCTTTCCTTATTTGAGCCTTCATATGCGACTGTGACCCTGCCTG
chr2:68658600-68658618
TTTATTCTTGACAAATGAGTCAGCAAAGTT68658600GCAAATGTCCCCTTATTTGACTTGGTTCAGTGTTTCAATGTCATTCCAA
chr2:81914983-81915001
CTAACTTGTTATAAGTAATAAAATTCCCTT81914983GCTAAATTCTCCTTAGTTGTGGTCATTGGGTTGACACCTGCCAAGCTAC
chr2:90111475-90111493
AGAATGTTCTCTTGCTCAGAAGCTGGAAGC90111475CCAGATCTCTCCTTTGTTGCTAGTTTGCAGGCTTCCTAAAGCCCCTCCC
chr2:117430042-117430060
GGAAGTCTAATGAGCATCAAAATGGAGGAA117430042GCAAATATCTTCCTAGTTGAAGGGGTAATACACATGCTCAGAAGCTACA
chr2:118929267-118929285
TCCAATGCTCTCTACCTTTCTTTATTTCCT118929267GCAACTCTCTCCTTACTTGTCTCCCTGGCTATCTTGCCCTGCTCCACCC
chr2:124325846-124325864
TTGCTCCCTTGATATGAAATCTTTTCTCTT124325846GCAAATCTCTCATTAGAAGGTTAATATCCTACAGAGGTTGGGTAGCAAA
chr2:135892248-135892266
ATTACTGATCCAAAAACATTTATATCATTT135892248GCCAATCTCTGCTTAGCTGGATTCTCTCTTGGTTTTAGACAGTCCGCTC
chr2:139663367-139663385
GGATTCTATTTTGGTTTTCTTTTACAGTTT139663367GCAAATCTCTCCAAAATTGCTTTGCTCATTATGCTTACTATTTTGTATA
chr2:141592731-141592749
CAGAGGGGCGGCAGACACAGGAATAGTTCT141592731GAAAAGCTCTCCTTAGTAGGGAAGACTTGCATCTGTTGAGAAAATCTAC
chr2:141912073-141912091
CACAGCTTCAAATTTTTCATCTCTCTATGG141912073GCTAATTTCTCCTTAGTTTTCTCTTCAAGCAATCAGAAATTAAAGACAT
chr2:146408654-146408672
AAACCTATTCTAGGGATAATTCCAGTGTTG146408654GAAAATCTTTCCTTAGTTCTCATCATCACTACAGAGGAATGGGAAGCAC
chr2:146566783-146566801
CTTAGGGTTTTTTCTCAAGGACAATGTGCT146566783GCTAGTCTCTTCTTAGTTGTGTAAGTAAAAGTCCCACTCTAGTGCTTTT
chr2:160715625-160715643
TTAGTATCTCTTTATTTATTTGGTAGATTT160715625TCAAATCTCTCCATACTTGGCAACTCTATTTCCCTAGAACACAGTTTAT
chr2:162227120-162227138
ATCCAAATATTCTAAAGTTTTTTCCTCAGA162227120CCAAATCTCTCAATAGTTGTCATTCTCTTGCTCAAATTCTTCTGCTGTG
chr2:185386601-185386619
AGACAAGTATTTAAGGTGATTTCCTCCTTG185386601GCAAATCTCTTTCTAGTTGGCATGAAGGACTTTATAGTTTATTGAAAAT
chr2:188814135-188814153
TTTAACAAACTGCTATTTCTCTTTGATTTC188814135GCAAATATCTCTCTAGTTGTATGATATATTAACAATTTTTAAAAGAGAA
chr2:189090945-189090963
TTAGTCTGTCATTTATCTGATTTTTTCAAT189090945GCAAATGTCTCCTTTGATGGAAGACCCATATCTTCCAAACCGGTATCTA
chr2:189285103-189285121
CTTTTATCAGTAATTTGTAGTTTTCAGTAT189285103ACAAATCTCTCCTTAGTTAAGTTTATTTCTAAGTATTTTATTATTTTGG
chr2:189678951-189678969
AGCCTCCTTTTCCTGCTTTCTGACCTAATA189678951GGAATTCTCTTCTTAGTTGTGTTTAAATACTACCTAGTGTATTTTGGCT
chr2:190071348-190071366
GGCCAAGTCTGAATAACCACCAGAGGAAAG190071348GAAAATCTTTCCTTATTTGTCATTTACAAAGACTTACCTGAAACAGTAT
chr2:205512052-205512070
TTTTGTTTTTTGAGGCATTCCTTATATTCT205512052GCATATCTGTCCTTTGTTGGATACAGTTTTGTTATACATGTATTTTTTT
chr2:215702501-215702519
GTTGCAGGAAGGAAGTAGGAACCCCTGAAG215702501GGAAATCTCTCTTTATTTGCAGGTCTTGGGAGGCCACTCTCTCCTTAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCAAATCTCTCCTTAGTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCAAATCTCTCCTTAGTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.038 | 6.028 | search_plus_done; http://172.18.8.78:28018/match?q=GCAAATCTCTCCTTAGTTG&k=3&no_gap=1&offset=0&limit=50
6.050 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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