GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-30 02:56:40, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:11825169-11825187
GCCACAGAGCTGGGCCAGCCAAGAAGGGGA11825169GCAGCCCAAGAACAAATGTAGATTCTTGAATTCACATCCCAGTTTCTTC
chr1:15564347-15564365
CATGTTTAGACCAAATAAAATGATTCAGAG15564347GAAACCTGAGAAGAAATGTCCAGCGTGAGGGGATTGATCAGCTCAGAAA
chr1:19539046-19539064
TTGCACACTTTGGTGGTTGTAAATTGTACA19539046GCAATCTAAAAACAAATGAGGTCAGTGTGCCTCACTACAGAGCTTCAAA
chr1:22884056-22884074
ATGTATTTAGAACAACACCTCCCTTACCCT22884056TCAACCCGAGAACAAATGTCTGGAGAACCGCCAGGAGTAAGCAGAAGAG
chr1:30542374-30542392
CCATGAATAAGAAGATGTCAGTCAGTTCCA30542374GCAACCTCAGAACAATTGCTTCCCTCAGTTTTCTAGTCTGTAAAATGGG
chr1:34461622-34461640
AACTAAAAGAAAATTTGCACAATAGACACA34461622ACAAACAAAGAACAAATGTCCTAATATTATTCAGACCTCCTGCAAATTA
chr1:55405833-55405851
ACACAAGGTAGGCAAAGAAAAGGCTAATCT55405833GCAACAGAAGAACAAAGGTTATAGCTGTCTAGGTTACAGCTTCCTAAGT
chr1:58694559-58694577
CAGCAGGACAGAGGCCCAGAGCATCCGCAG58694559GCAACCTAACAACAGCTGTAGTGTGTAGAAAATGCAATCAAATATGCTG
chr1:68111192-68111210
TCCTTGAAAATTCTCCCTTCTTACATTTCT68111192GCCACCTAGGGACAAATGTACTTCAAATATTCCTTGGAACTCTGTTCTA
chr1:69678586-69678604
AAGCCTCTTGAGGACACGGCAGAGCACTTT69678586GCACCATTAGAACAAATGTGTTGGGAAAGAGTGGAGAATAATACTGTAC
chr1:84986096-84986114
AAGGGAAAATGTACTCCAAGTGCCAAGTGG84986096CCAACTTAAGAACAAATTTTTAGTTCATTTTGGTTTTTGTTTGTTCAGA
chr1:88522169-88522187
TTTACCATCTTCATGAAATACTCTATAGGT88522169GCAGCCTTAGAACACATGTTGAATTACACAATCCTGATGCCTCTAGTAG
chr1:91030018-91030036
AAAAACACAGCACTCTAACTTTTGGGAACT91030018GCAACCAAAGAACACATGGGCTATAGAGTCAGGATTCAATTCCCAACTC
chr1:91578376-91578394
GATTTCTTGCATCATACCCCAAAAGCACAG91578376GCAACCAAAGATAAAATGTACAAATGGGATCACATCAAGTTAAAAAGCA
chr1:102870384-102870402
GTAATTGCAAAAACCATGATTGCTTTTGCA102870384CCAACCTAATAACAAATATGTTATTTTTTATTACATCCAACATTTATTT
chr1:103479661-103479679
TGTGTTATCCATGATATGTTAAATAATCCA103479661GAAAATTAAGAACAAATGTATTTCAAATTTTATTCTCTTAATTATAACC
chr1:106054560-106054578
TATGAGCCCACATGTATATTGGCTATTATT106054560GCAGCTTAAGAAGAAATGTACTGAGACATGCAAAGGAGGATAGTATAAT
chr1:107214425-107214443
CCCCAAAAAACTGAAAACTTATATGCATAA107214425GGAACCTAAACACAAATGTTTATAGTAGCTTTTTTCAGAATTGCCAAAA
chr1:116515552-116515570
ATGACAGCAGTGTCCCCCTAAATTAGTGTT116515552GGAACCTAATACCAAATGTGATAGTATTAAAAAGTAGGGCCCTTGAGAA
chr1:118338555-118338573
GGGCTGCAAGGCCACGGGCTCAAAGCAGAG118338555GCTACCGAAGGACAAATGTGTTACAAAGTGTTATGAAATGAATTGACTT
chr1:118571409-118571427
GTTGGTGTCCCCCATCCAAACTCGTATGTT118571409GGAACCTAATAACCAATGTGACAGTATTAAAGGTGGGGCAGTTTAGAAA
chr1:119217348-119217366
ATGGAGCCAAGGTAGGAACAGTTAGAGGGA119217348GCAACCTAAGAACAAATGTTGGCAGTTCTACTTAAAGTCACAAAACTAT
chr1:119927867-119927885
CTGCTCCCTAGAGTTTCCAGACAAGCACAA119927867TCAACATAAGACCAAATGTTCTCACCCTTGGAGCTGCCCAACTTGTCAC
chr1:158980406-158980424
ATGTATTATATGACATCATCCCAATTTTAC158980406AAAACATAAGAACAAATGTACACAGAGTAGAAAATTTTTTTCAGTTTCA
chr1:159420332-159420350
TATAAGCCACAGAATACAAAAAAGAAGAAA159420332GCAAACAAAGAACAAATGCAATAAATAGAAAACAGTTGCTTCAATTAAA
chr1:159727590-159727608
TAGGACATAAATTTAGCTTTGAGCTTCATA159727590GCAACCAAAGCAAAAATGTATTAAAGTAAAAGTCTATTGATTGCTCAAG
chr1:168304308-168304326
CTGCATGTTTCAGATTATAGATCTATGAGG168304308TCAACCTAAGAATAAATGTACAAGTGGAAGTACAGTGTCCATTACTTCA
chr1:189456905-189456923
TTTAAACAGAAAATGAAATATCTATCTCAT189456905GCAACTTAAAATCAAATGTAAGTCCTACTTCTGGATTGGCTTGATAGGA
chr1:196246733-196246751
TGAACTGTTGAGGAAAATTGAGATCTGACA196246733GCAACCTAAGCAAAAATATAGACTCTCCAATAGTAATTACTGAAAGAAG
chr1:198668982-198669000
ATTTGGAATTTCAGTCACTCTTAGGAATAT198668982GAAACCACAGAACAAATGTCCTTTTAACAGAGATGAAATAATAGTGAGA
chr1:199090203-199090221
ACCCATTATATCATTAATATAAAAATATTG199090203GCTACCTAAGTACAAATATTGTGGACATAATTCTTGGCTATTTGACCAT
chr1:202619197-202619215
GTTCTCTCTAGACTCGAGCCAGACATGTAG202619197GCCATCTAAGAACAGATGTTTGGCAGAGGGCCCCGGAAGAGGAAAAGGG
chr1:213434669-213434687
TAAGTAAAGCATCTTGAAGGTGTCCCTCTA213434669TCAACTGAAGAACAAATGTCTGAGTTTAATATATGACTGCATCAAAAAA
chr1:215130475-215130493
ATGTCTGTGTCCCCCTAAAAATCACATGCT215130475GGAACCTAAGACCCAATGTGATAGTATTAAGAGGAGGGTCTTTAGGAGA
chr1:218197837-218197855
CAGCCAAGCCTAAGCACAGACCTCCTCCCA218197837GCCACCTAACAACAACTGTTCTTCCACAGCAGTTTGAACACAAAGCCAG
chr1:226192146-226192164
ACCTTCATTATTTTATTTAAATTTAGCTGT226192146GCAACCGAAGAGGAAATGTTATTTGGCAAATAGAGAGAGACTGACTGAA
chr1:226367174-226367192
CCTCATCCTAGTTACCATATTTCCACCAAA226367174GCAGCCTAAGATCAAATCTGTTTTATTTCATGGCCATATCACACTGTTG
chr1:229669584-229669602
GTAAAACACAAAACAATAAACTCCTAGAAG229669584GCAACCTAGGAGCAAGTGTAGATGACCTTGAATTTGGTGATGACTTTTT
chr1:236405627-236405645
CTATGAGTGTTAAGCACTCAAATATAAATG236405627GCAACCAAAGAGCAAATGTGAAAGGAGAGGTTCAATGGCTTGCTTTGAT
chr1:239431330-239431348
CAAATCTCCTGGCTTTAAGCTAATGCCATG239431330TCAACCTGATAACAAATGTTCTAGCAGCATAAAGCAACAGCAGTTTATT
chr1:243064198-243064216
CCAGAGTTTGAACCTTGCTAAAGGCCAGGA243064198GGAACCAAAGAACAACTGTGTGAAAAGGTGAATATCATTCGCATAATTG
chr1:244099286-244099304
GAGACCCAGAGGAAGAGCATTGCACAAAAG244099286GAAACGTGAGAACAAATGTCTAAAGATGGGAAAAAGCTTGAGACATTCA
chr1:246137006-246137024
CAGACACTGTCCAAGGAGCATCAGACCATC246137006CCAACTCAAGAACAAATGTCCCAGTTAGCCATGGCTAAAGAACACTTCC
chr1:247230806-247230824
GAGTTCACAGGTAGTTCCCCACAAGCACAG247230806GCAACCAAAGAAGAAATGGACAAAAAGTATCACATCAAGTTAAAAAGCT
chr2:178393-178411
CCATTTTAAGTATTCCTAACTAAATTGAGA178393GCAATTTAAGAACAGATGTCTTCTTGCACACACATGTTTATAGCAGCAA
chr2:2326286-2326304
TTTCATTGTCTTTGCCCGTGAGCCTGCTCC2326286ACAGCCTGAGAACAAATGTGACGGAGAGTGGCACGCGGGGCTCCGTGAA
chr2:5372466-5372484
GTTAAGAAGTGATATTAGAAGAACATCTAA5372466GCAACCTAAGAGAAAAGGTGATACTTTTTTTTTTTTTTTAAAGACAGTT
chr2:13989003-13989021
GTAAACATGTGACAGTTTTTTAAAACACTG13989003GCAACCTAAGAAAATATATCTTTATAATAAAATGTATTTCCTAAATTTC
chr2:14453800-14453818
ACATTTGCAGTAATTTGGCTAAGGGCTATA14453800GCAACCTAATTAGAAATGTTCAGTTCTACAAGTTTACAAAATTGTATTG
chr2:16645440-16645458
TTTCAAAATGAGCTAAGTTAGTAAAATTTA16645440TCCACCTAAAAACAAATGTTTTGAAACAAAAAGAGGAAAATAATCCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCAACCTAAGAACAAATGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCAACCTAAGAACAAATGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.291 | 6.281 | search_plus_done; http://172.18.8.78:28018/match?q=GCAACCTAAGAACAAATGT&k=3&no_gap=1&offset=0&limit=50
6.303 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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