GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 10:18:43, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:17176434-17176452
CTAGGATTTGAAGCTGAGCCTGGCTGGCTT17176434TCACATCTTTGCTATGTAGTTTATATTTCTTGGTGTTATTGTAAATGTT
chr1:17681031-17681049
TCTTGGCACTCCCTTCTCCTATCTCAGGGT17681031CCAGATTTTGGCTATGTAACTCGAGGGCCCCAAACAGGGGGTATCAGTG
chr1:22600438-22600456
ACATGGGGGAAGGGATTAAGACACTCCTGG22600438GCACATAGTGGCTATTTAATAAACTTGAGTGCCTACTATTGATGGGCTT
chr1:41808156-41808174
TGGGATCAGCCAGACTGGGTTCAAATCCCA41808156GCTCATCCTGGCTGTGTAACCTGGGATAAAGCATTCCTCCTCTCTGAGC
chr1:51484160-51484178
ACCTTCCCAAGCCATCTCAGGTGTAATTAG51484160GCACATCTTTGCTATGTTCTTTTAGCACCCTATCATAGCATTTTCAAAC
chr1:53096362-53096380
CTACATGACATACAGGATGGGTATTGCCTG53096362GCACATCATAGCTCTGTAATAAGTGTCTGCAGGAGAACAGAATGAAGGA
chr1:54262120-54262138
TTTTGTTTGCTTTTTTCCCAGTGCCTAAAA54262120GCACACCTTGGATATATAAAGAACTCAAATATTTCTTACATGAAGTTAT
chr1:55817123-55817141
GCCCAGGACTATTCCCAGCCCTAACTGTGA55817123GCACATCGAGGCTATATAACAAGTAACTTTCAAGGCATTCATAGCCCAT
chr1:76382498-76382516
ATGGCACACATTTACCTGTGTAACAAACCT76382498GCACATCTTGGACATGTACCCCTGAACTTAAAAAAAAAAGACAAAAAAT
chr1:88857627-88857645
GCAGACATGTGCAAAGAGGCAAAATCTGAG88857627GGACATCCTGGCTTTGTAACAACTCACTCTGATCAGATCTAATCCATTC
chr1:97738201-97738219
AATTGAACTTTGAATAAGAACAAGTACGTT97738201ACACATCTTGGCTGTTTAAAAAGGTTAATCTTTAAGTAGATTAATGACA
chr1:111816320-111816338
ATGAAACATGTTTGTCTATGTAACAAACCT111816320GCACATCTTGCATATGTATCCCGGGACTTAAAAGTTAAAAAAAATGCAA
chr1:113094786-113094804
ACAATTTAGATACACCAATTAACCTAATGT113094786GCACATCTTTGGGATGTAAGGGGAAACCCACAAAGGCATGGGAATATCT
chr1:146835011-146835029
ACGAGTTGATAGGTGCAGCAAACCACCATG146835011GCACATGTTCACTATGTAAAAAACCTGCACTTTCTGCACATGGATCCCA
chr1:156329474-156329492
GTGCTGTCAGCCATTGCACCTGGGCCAAAA156329474GCACTTCTTGGCTATGTTCCACGTGATGGCAAAAAACACAGCAACCGGT
chr1:169143845-169143863
CTTACACAAACCTAGATGATATAGCCTACT169143845ACACATCTAGGCTATATAATTTGCTACTAGGCTATAAACTTGTATAGCA
chr1:177050749-177050767
GGTGTGGGTGGCAAGGGGAAGACACCCTGG177050749CCACATCTTGGCTAAGTTACAGAGTCATGCAGTGATGGCAGGGTGCCTT
chr1:181431138-181431156
AGCTTATTATACTAATGGGGATTATAGGGT181431138GCACATCTTGCTTTTGTAACCAGCTTTACTGATTAATAATATATTATGA
chr1:185736794-185736812
ACTGTGTTTTAACTGTGAATAAAGGTATCT185736794GCAAATGTTGGTTATGTAATATCCAATTCATCCCTAGAGATGCTAATTA
chr1:194505489-194505507
GTATTACATTTAGTAATTATATCTCCTTAG194505489GCACCTCTTGGCTATGACAGTTTTTTAGACTTTCCTTGTTTTTCATGAC
chr1:203388353-203388371
GCTTTATCCATTCTTCTGCACCACCATCCT203388353CCACATATTGGCTATGTATGCTTTTGCTTATTCCCTCATTGTAGCAAGA
chr1:212081460-212081478
TTGATATATGTATACATTGTAAAATAATTA212081460CCACATCTAGGCTAAGTAATGTATCCATCACCTCACATAGTTACCTTTG
chr1:215702514-215702532
AGGAATCTCTCACCATAACCTGGTCACTAG215702514GCACATCTCAGCTATGTGACCAGCCTTAACTGTTGAAACATCACCCCCT
chr1:223855727-223855745
ACTCCATTCAGTCAAAACAGAATGGTCATT223855727GCAAATCTTGGCTGTGTCACTGCCAAGCTTAAAACCTCCAATGGCTGCC
chr1:231826343-231826361
CTAATCCTTATTGAACTGCAAGGTGTGATG231826343GCACGACTTGGATATGTAAGTGAGAATTGATTCTGGTCACAGGGGATGT
chr1:232427594-232427612
TTACTGTTCTTTGTGACAACCTCGGTTTCA232427594ACACATCTTGGCTATGCATCTTGGTGTGCTGCCAACTCAGCCACCTCCC
chr1:234664269-234664287
AGGTCTTACAGTGATCATTAGAACAAAAAG234664269GCATCTCTTGGCTATGTGATCACGCATTTACCTCATGAGATAGCAGCAT
chr1:238052233-238052251
GGGCCTATGATTCCTCATTTTATTAGTGCT238052233GCCCATCCTGGCTATGTATTGGGAAGGAAGGCAGGTGAGAAGAGTGAAT
chr1:240845372-240845390
ATGACACACGTTTAACTATGTAACAAACCT240845372GCACATCCTGCCCATGTAACCCTGAAAATAAAACAGGAGATAAAAGAAA
chr2:16095496-16095514
CAGGGAAGAGACTCAGATAGGAGCCCTGGG16095496GCATATCTTGGCTCTGCAATTCACCAACTCCATGGCTGAGGGTCAGTCA
chr2:17809518-17809536
CTTGGCTCTTTCTGGATTCACCTGGGTCTG17809518GCACATATTGGATATCTAACAGTTGTTAAATTGACCTAGCATTGGAGGC
chr2:85224045-85224063
CTTACAGAAACCTAGACGGTATAGCCTACT85224045ACACATCTGGGCTATGTATGTTGGCCAGGCTAAGCTATTGCTCCTAGGC
chr2:99966676-99966694
TTCATCTGTTGATGGACATTTAGGTTGACT99966676GCACATCTTGGCTATTGTAAACAGTGCTGCAGTAAATGTGGGAGTGTAA
chr2:111864187-111864205
TTGATAGGAAGTGACTTTTGATCGAAACAT111864187GAACATCTTGGCTATTAAATTATAAAACTCTGGATCTTACTTAAATCTT
chr2:114721001-114721019
AGCTTCTCCACGGGGCATACTTGAGGTCGT114721001TCACATTTTGGCTATGTATCTCCACATTGGTGCTAAGTTTGTGTACCTC
chr2:123538044-123538062
AGGAAGTCTCTGGGTCCTGATAAGCTAATT123538044CCACATCTTGGCTATCAAATGATGGTACAGAACTTGAAAAGCAATGAAA
chr2:125858351-125858369
ATATTACATTTAGTCACCATATTTCTTTAG125858351GCACCTCTTGGCTATGAAATTTTCTTAGTCTTTCCTACTTTTGAATGAC
chr2:132437690-132437708
CCCAGGACCTCTGAGGTGCATCTATATCCT132437690GCACATCTAGGCTCTGAAAAGCAGGAGGTCCTGGTTTCCACAGCTGTGG
chr2:147553516-147553534
GAGTCAGATAATTGAATCAATATGATTCAC147553516CCACATATTGGCTATGTGACATTGGGCTTCAAAGCCTTTCAGTCCTAGT
chr2:159265200-159265218
TTCATCCATTGATGGACATTTAGATTGTTT159265200CCATATCTTGGCTATGTGACTAATATTGCAATTAACTGATTTCATTTCC
chr2:176021476-176021494
CTCCAAAAAGGAATGCAGCTCTGCCAACGC176021476ACTCATCTTGGCTTTGTAAGTCCCTAAGCTGAGGACTCGGCTGGGCCCG
chr2:199865480-199865498
CCTACACAAACATAGATGGTGTAGCCTACT199865480ACACACCTAGGCTATGTAAAATAGCCTATTGCTTCTAGGCCACAAACCT
chr2:215052441-215052459
CAAACCTCAGGTTAAGACAAATCCGCCTAA215052441CCAAATCTTGGCTATCTAAGCTGTCCAGTTTTTCAGGTTACTCTTATAA
chr3:19585329-19585347
GAGAAGCAAAGATTCATAACCTGAGGGCCG19585329GCACATCCTGGCTTTATAACAACCCACTCTGCAGGAACTAAGGCATTCC
chr3:20785905-20785923
TGGGCTCAAATTCATTTGAGTTGAAAAGCA20785905GCATATTTTGGTTATGTAAAAATAATATATACAAGTTGCTCTAATAAGG
chr3:30034837-30034855
CTGGTCAACGGGTTATATGTGGGGAAAGGA30034837GCAGATATTGGCTATGTATAAAGCATAGCAAGAGACATTGATTGGTGGG
chr3:37785265-37785283
AAGACACTACTATTCATGCCTGGTCAGAAA37785265GCACAGACTGGCTATGTAACAGCCCCAGCAGGGAAGCACTGGGTGCAAG
chr3:40424050-40424068
GAGATAAAGAGTCATCATAGCCTGTGCTAG40424050GCACATCTCTGCTTTGTAATAACTTTCCCCGTTCCGGGTTTCACGTGTA
chr3:47313933-47313951
TCAGTTATTGGTAAACTTTAAGTATGTCTG47313933GAACAACTTGGGTATGTAAATCTACTTTTTCAACATTTTATGAAATCTA
chr3:58358010-58358028
TTCTGTACTTTCCAAGTGCTCCACAAACAA58358010GCACATGTAGGCTATCTAAGTGGAAAAACAGAAAAAAGCTGCTTTTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCACATCTTGGCTATGTAA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCACATCTTGGCTATGTAA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.193 | 5.183 | search_plus_done; http://172.18.8.78:28018/match?q=GCACATCTTGGCTATGTAA&k=3&no_gap=1&offset=0&limit=50
5.206 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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