GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 00:46:03, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:16628730-16628748
TTATCTTTGAGATGACTTTTAGAGAACAGG16628730ACACTTTCAGTCCATTAAGAAGGGCAGGCCGGGTGCGGTAGCTCAACGC
chr1:17607717-17607735
AGATGATTAAGAATGCCCCCTGCTCTCAAG17607717GGACTTTCAGTCTAATCGGTTGAGAGGGAAACTCTTCCCTTCTCTGAGG
chr1:27208895-27208913
AAAAAAATTGCTCCTCCCCTCTTTTGCTGA27208895GCACATGCAGTCCAATTGGCCTACATTAACTGCAGGTGTGACGCAGCTC
chr1:36195775-36195793
TCAACAAAACGGATATGCTCTGTTTTCACA36195775GCACTTACAGTCTAGTAGGGAAAGCAAGCCTCAACGAACATTAAAGTAA
chr1:37585336-37585354
TCAAGAATAACACATCCTCCTATGTGTAAA37585336GCACTTACAGTCCACCAGGCACTTACCCATCCATTATGTTCTCTCCTCC
chr1:55567742-55567760
ACAGAAATGTGCACGGCCCCTGATCTCAAG55567742GCACTTACAGTCTATTAGGGTAAAGAGGCATAATCAAGCAAATGTCCTA
chr1:68104649-68104667
ATTTCAAAAGTGGATCCCAAAGATGGTCAC68104649GCCCTTTCAGTCCAAGAGCCACACCTCAAGAGGGAAGTGGGGCACAGGC
chr1:77421909-77421927
TCTATTAAAGTCTCTACTTATGCCTCTACA77421909GCACTTTAAGACCAATAGAGGAAGCCATATACCTAAGTGAGGCCCAAGA
chr1:170506961-170506979
GATTTGCTTATTGTTTATTGTTTAAAATTA170506961GCATTTTCAGTCTTATAGGTAGGTTCTGTAAAAATGCAAAATAAAATAG
chr1:172693184-172693202
ACCTGAAAGCATGAGTATGAGATGCTTTTA172693184GCAATTTCAGTCCAATATGCATAGCACAGTCTCATTTAAGAACAATATA
chr1:173303712-173303730
CCTGCAACTGGCTGAATTACAACACAAGTT173303712GAACTTTCAGGCCTATAGGCTGTCTACTGTTAAAATGATTAGGAAGTAG
chr1:203091829-203091847
GGGCTGCCCAAGATTCTCCTCCTTGAGGAG203091829GCCCTTTCAGACCAATTGGCCCAGCAGTTCCAATCACCTCCCGAGCGTC
chr1:204404796-204404814
TGTCACCTCCATTCATACAGCACTGACTTT204404796GCCCTTTCAGTCCCATGGGGTTTACAGATCTGTTCTCCTAACAGCTTCT
chr1:204631231-204631249
TGATCAGTTCTGTATCTGTATCTTCAGCAG204631231GCACCTTCTGTCCAACAGGAAGAAGGAACCCAAGACTGAAGACCCACAG
chr1:236289465-236289483
CATCCTGCCCTCTCCCTCTTTGAAGAGCAA236289465GCACTTTCAGTCCAAGCTGGAGACCATCTCTTCCTGGTTTGCAAACTAA
chr1:240714609-240714627
TGCATGGAAACTGAGTTCAGTGAAAACTAC240714609GCATTTTCAGTATAATAGGTTTACCTTGTGTTTTTTTTTGTTTTGTTTT
chr1:249209580-249209598
CTTTCAGTACCCATACTGTCACTCTGTTTT249209580TCACTTTCAGTCCAGTAGTCAATAAATTATATGAGCTATTTAATACTTA
chr2:8795725-8795743
ACATGGTTCAGCTGAGCCTCTTGGCTTCGT8795725TCACTTTCAGTCTATTAGGGACAGTGACATGGGCCAAAACTGCTTCAAA
chr2:14000335-14000353
TTAGATAATATACACTTTTAAAATGAACGT14000335GCACTTTGAGTCCAACATGACCAAAGTTTACACCAGGTGCCGTACTAAT
chr2:25736900-25736918
GAAAAAAAAAAAAAAAGCCTTGCTTTCAAA25736900GAACTTACAGTCTAATAGGGTAGAGATTATAAACAAATACAAAAATGAA
chr2:29912243-29912261
ATATCCTGAGAGAATTTTCCCGCAAAGTCT29912243GCACTTGCAGTTCAAAAGGTGACTCAGGTCCCTGCTACTCCTGGGATAC
chr2:36382638-36382656
AAATCAAACCTGACAGCTCAGTCCCAAAAT36382638GCACATTCAATCTAATAGGAAAGAGTGTCAGCAGAAAATAATTACCTGT
chr2:41392712-41392730
TCATCTGATTGTTCTACTTCCTCCCTCAAG41392712GCACTTTCAGTCCACTAAGTTCTAAGGCAATATTTTCTACTTATGATAA
chr2:62315533-62315551
CGTAAGCACTGATGAATAAATGTACTGTGG62315533GCACTTTCAGCTCAATATGACATTTTTACTTCAAATATGTTTTTCCCCA
chr2:76611959-76611977
TCTATTTTCATAATACTGTCATAAAGTCAC76611959TCACATTCTGTCCAATAGGAGACAACACATTTTTTATTCCCAGTTCCCG
chr2:111592508-111592526
AGTGATCTCCATGCTTTTCAAGCAGGGTTG111592508TAACTTTCAGTCCAAAAGGTAGTGCCTGGGTCAGGCTCTTTGTGGGGAG
chr2:123547897-123547915
AGGCAGAGTTTTTGAGTGATTTTCTGCATT123547897GCACTTTCATTCCAATAGTTCTGTTGTACCCTCTCATTAAATAATGGAA
chr2:135271388-135271406
CCCAAGCTGGGCCCATCAGACACTCTCCCT135271388GGACTTTCAATCCAAGAGGAATGATAACAAGGACTGAAAGCCAAGATGA
chr2:144028567-144028585
CAAGTTATGTTTTTCAATCTTCACAAATTC144028567ACACTTTCTGTCCAATAGCTCCTCTCCATTTTTCATGTGTACCATTTCT
chr2:146749243-146749261
TATTGTTTAACATCTTTCCTTCATTTACTT146749243GCACATTCAGTCCAAAAAGATATATTTAGAAATTTATGGCAATATTTCT
chr2:168682486-168682504
AATGTTACAAATGTTTTCCCTCTGATTCCT168682486TCTCTTTCAGTCCAATAAGCTAAGGCCTTAATTTCAGCATCATTTCTTT
chr2:175685450-175685468
CATCGCTGCGGTGTGCTTAGCAGCAAGCCA175685450GCACTTTCAGTCCTGAAGGGACGGCTTGCCTGGTATTAGCTGGATTTAG
chr2:182623167-182623185
TTTCAGGACCTCATTGTAGCCACCTCATTA182623167GCTCTTTCAGGCCAATAGATCACTGGCATCTAGCCAAGATCTAAGGGAA
chr2:187630193-187630211
TATGACTTTATGCAGTTGTATAGGGATTAT187630193GCCCTTTCAGTTCTATAGGGATTATGCCCTTTTATAATACATAATATAC
chr2:196587222-196587240
CCTAGTTTTTGCCTTAAGGCACAGCAAAGG196587222GCACTTTTTGTACAATAGGACCAGGTCAGTGTCCCTACTCTGATCAGAT
chr2:197894250-197894268
GTGCCATATAATTCATCTAACTTCCAGAAA197894250GCACTTTCAGTCCAATGCAGAAACATCCCACATGCCCACCAAGAGCAAG
chr2:200728568-200728586
AACATTAGGATGGCCATTTAAAAGACAAAT200728568GAACTTTCAGTCCAATATCTGAGATACCTCAAAGATTCAGATGTCTCCA
chr2:201120224-201120242
CAAAACATGATCCACATTTTAGAGGCTGAA201120224GCACTTTGAGACCAAAAGGGGTTTTGGTGGTCAGCACCTGCTCTGCTTT
chr2:201203565-201203583
CTCAAAGCCAGACAGCTGTCTCCCAAATGT201203565GCACTGTCAGTCGCATAGGAAACCAGATGACCAAAAGAGGGTGGATCAG
chr2:215697639-215697657
TCTTGAAAAATGGAAACATCTGGCAATATG215697639GCACTCTCAATCCAATATGATAATGACTGAAATTGCTGAGAAATATCTG
chr2:227419069-227419087
ACTGACATAAAAGTGATACTAATACCAATG227419069GCACTTTCAGTCTAATACTGAATTAAAATCCTTAAGTAGAAGAGATTTA
chr3:10146032-10146050
TGCACATAGTGACTGTCATCTGAATCTGAG10146032GCTCCTTCAGTCCAATGGGCCACTGGTGCTCCCTGCTAATGATTTTGCA
chr3:26198793-26198811
ATTTGAGTACCCACAGAGCCATTCTTTTTT26198793ACACTTTCAGTGCAATAGTCAATAAATTACATGAGTTATTCAACACTTT
chr3:37123785-37123803
TATCTAGCATATATAATGCTCTTCAATGGG37123785CCACTGTCAGTCCAATATGAAAACAACTAGAAGCCTCTTTTTCACCATC
chr3:45608754-45608772
CAGCTCCACAGCAGAGGGAGGATCTGTGAG45608754GCACTTTCATGTCAATAGGGGTTGCATGTCCTCAGAGGAAATCAAACCG
chr3:96433353-96433371
TGACAAATGTCTATTCCATCATACCACCTT96433353GCACTTTTAGTCCTATAGAAATCACACTCATTCCTCCTACACAAAAAGT
chr3:105432165-105432183
CTAAGTAGGAAAACTAGAAGATGAGCCCAG105432165GCAGTTTCACTCCAAGAGGGCAGCTCTACTTAAGAATATAACAATTAAG
chr3:116087476-116087494
CTTCCTCTTAAAAATGACTGGTTTCAACAA116087476GCTGTTTCAGTCAAATAGGCCAGTTAACCCCCAAATTCAAAGGAAAAAA
chr3:133629889-133629907
ATGTGACTTGCCTGCCTCCCCAGCCATGTG133629889GAACTGTAAGTCCAATAGGCCTCTTTCTTTTGTAAATTGCCCATTCTCG
chr3:134403646-134403664
CAGCAAGGAAACTTCACTTTCACTCCCAGT134403646TCACTTTCAGTCCAACTGGACCAATTTAGGCCTCATATCCCTCTCTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCACTTTCAGTCCAATAGG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCACTTTCAGTCCAATAGG | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.017 | 5.007 | search_plus_done; http://172.18.8.78:28018/match?q=GCACTTTCAGTCCAATAGG&k=3&no_gap=1&offset=0&limit=50
5.029 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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