GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 10:36:44, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4309187-4309205
TGAGAAGACTGAAATATTTGAAGCTAACAT4309187GCATGAAAAGAAGCTTTTGCCACTTGGGCCTAACCTAACTTTGCATTTA
chr1:10670246-10670264
TCTATATCATGATTGTGATTCATGGTTTTT10670246GCATCCTAAGAAGCCTTTGTCTACCCCAAGGTTGAAGAGACTTTCTCCT
chr1:15233408-15233426
CCTAGGGCTGAGATTTACAAATGCTGAGAT15233408GAGTACAAAGAAGCTTTTGCACTGGAGCAGTGTTTTGTCCCTGGGGGAA
chr1:22443605-22443623
TTTAAGTAGCTGGTCATGACCCAGTGAAAT22443605GCACACGAAGAAGCCTTTGTGTGTTAACAGTGAAGTTTCAGAAAGCATG
chr1:41303496-41303514
GGTGAGTGTAGGATGGGGTGGCGGAGCTGG41303496CCATACCAAGAAGCTCTGGGGGCCGCGGTGACATGGGGAGGATGCGTTT
chr1:51705124-51705142
ATCAGAAGAAAATTACTTTAAAACATGGGA51705124GCATAAAAAGAAACTTTTGGAGAAAAAGTATTGTCCCCCACCCCCAAAG
chr1:60529293-60529311
ACAAAAAATGGCTTTCCTGCTCTTTCTTAA60529293GCATACCAAGAGGCTTTGTTCTGACTATTCTGTCTCCTTAGAATGCTCT
chr1:70895236-70895254
CAAGAGACCAGTTGACCTGGGCTTATCTGC70895236GCTTTCCAAGAAACTTTTGCCTTCAGATTCAATACTGGATTCAATACTT
chr1:71828732-71828750
CTATAATAGTTCTTATTATCTCATTAGGTA71828732GGATACCAAGAAGTTTTTGTTTTATGTATTTTAAGAAATGTGTTGCTAA
chr1:77568513-77568531
TTTTATATTTAAATTTCCAAGAGCTCTTTC77568513TCATACAAAGAAGCTTTTTTTGTTTGTTTTATACCATCCTAGTCTTCTT
chr1:87167018-87167036
AGGGTAGACTAGATAGAAGCTTTTCTTCTG87167018GCATAGTAAGAAGCTTTTCTGTCAAGGCACAAGCTCTGAAAGAGAAAAA
chr1:99841721-99841739
ACATCCAATTGAGCTCACTAGCAGGAAGGA99841721TCATACCCAGAAGCTTTTTCAGAGAATACAGAGGTAAAAAATAACTTAA
chr1:115789736-115789754
ATGCTGATTTTTAGGAGTGGGGCTACATAT115789736GCAAACTAAGAAGCTTTGGAGAAGTCTTGGTAGTCAAAATACTCAGGGC
chr1:120778706-120778724
CAGACAAACTAACAATGGACATTAAGTACA120778706TCATACCAAGAGGCTTTTCAAAATCAGTAATCAAGTGGCACTATCAGGA
chr1:147156786-147156804
ACATGTCTTAGCAAATTTAAGAGGATAGAA147156786GCATATCAAGTAGCTTTTCCAATGACAATGGTATGAAACTAGAAATCAG
chr1:165729726-165729744
TTCTGATGCATTTCAATTACTATCATGATT165729726ACATAACAATAAGCTTTTGAAAAAGAAATAGTGGGCCGGGTGCAGCGGC
chr1:175513797-175513815
GCATTGGATATGAGTACTCAAAGAATGGAT175513797GCAAAGCAAGAAGCTCTTGAGGACACTGATATTTAGGAAGTGGGTTGAA
chr1:176073026-176073044
AATTGGTAAGATAAAGGCAGTTCCAATAAA176073026AAATACCAAGAAGCTTTTTTAGGGAGCTAGATAAACTGATACTAAAGTT
chr1:179232204-179232222
ATTATAATTTAATACATTTGGGGGGAAGAA179232204GCATTCCAAAAAGCTTTTTTAACTCAGTGTTGAAGGGATGTACAGCAAC
chr1:184428997-184429015
GCAAGAGGTTGAGCAGACCTAGCAGGGAGG184428997GCATCCCAAAAAACTTTTGCATCCATCCATGCACTTTGCTTCCATTTTT
chr1:188977170-188977188
TAACCGAGTAGGTGAGTCAGAAGCAATTCT188977170GCATTCCAAGAAGCACTTGCCTATGTAATGAGGATCTCTGAGGACTCAG
chr1:190516599-190516617
CCAAACTGAAAATCCCAGGAATAAACAGCA190516599GAATACCAAGAAGATTTTGAAAGCTGAGAATAGAGGTTTAAAACTTGCT
chr1:194697309-194697327
TAAATATTCTTGCTTAATTTGATATATCTA194697309GCATACAAAGAGTCTTTTGTAAATCTTCTAACACATTAATGAAGAAATA
chr1:198242900-198242918
TTTTTACTAATTGGATATATGAAGGATAAG198242900GCATACCAAGAAACTATTATTTTTAAGTATGAAATGTGCCAAACAGACA
chr1:206078211-206078229
CAGACAAACTAACAATGGACATTAAGTACA206078211TCATACCAAGAGGCTTTTCAAAATCAGTAATCAAGTGGCACTATCAGGA
chr1:212388656-212388674
AGCACGGAGAGGTTTGAAGGGGAGTGTCGG212388656CAGTACCAAGAAGCTTTTGGGGGCAGTTTGTTTCTAACACCACCCATAA
chr1:214570429-214570447
ATGACAGACTGGGGATCTAGGAAAATAAAA214570429GCCTACCAGGAAGCTTTTGGTTAGAAAACTGTCTCAAAATGACCTGCTG
chr1:232966463-232966481
AAAGGTCTTTCTTTCATAAGGAGTAGAGAA232966463GCCTACCAAGAAGCATGTGGGGGAGTGGGATGAGGCAGTGGCATGATCA
chr1:236800128-236800146
TACCTCTATGCATAACTTTTCCAAAACAAC236800128GCAAACCAAAAAGATTTTGAGTGGCACATTTGCCTTCTTCACCAAAGCC
chr1:239225298-239225316
GATCATCTGACCCAGTCAGGATTTGGCAAG239225298GCATACCACGAAGCTGTAGCTTGGGGTCAGGAGTAACATTTCACATCTT
chr1:240072310-240072328
TGGTTCTGGTGAACACCTTTTGTGACAGCT240072310GCATACCCAAAACCTTTTGGAATCTGGGCTACTGGCTGTGCTACATCAA
chr2:17321206-17321224
ATATCTGGCATATGATTTAAAAATTACTAC17321206CCATGCCAAGAAGCATTTGATGAAAACAAACTCAGATTTTCAATTTCAG
chr2:41359962-41359980
GAAAATAGACAATGGTAAATCCATATTTGG41359962GTAGACCAAGAAGCTTTTTAATAACTTGTTTTAAATTAGAAAAATGTGT
chr2:45446267-45446285
GGTGAATGAAATAAACCCACAAAATAAGAG45446267GCATACCAAGAAGGTGTTAAACCAGTTTGGACACTTCATCCAGAGCCTT
chr2:45739248-45739266
GCAATACACATCTTTTATGCAAAGTGGTAT45739248GCAGACCAACATGCTTTTGTCAAGATATGAGTCTTGCCAAAGGGATTTT
chr2:49406101-49406119
GTGCAGCCTGCGTCTTCAGGTCAGACCCCG49406101GCATACCCAGGTGCTTTTGTGATGATTAAATAAGATAGTGGATATAAAG
chr2:51829001-51829019
GATTTTGTATCTTGAGATTTTACTGAAGTT51829001GCTTATCATGAAGCTTTTGGGCTGAGAAGATGGGGTTTTCTAGATACGG
chr2:58669278-58669296
TAGAATAATAAATAAATAACTTTTTTTATA58669278GCAGACCAACAAGCTTCTGGTGAAAATAGCTACTGCCTAATTTAAAATG
chr2:59591157-59591175
ACAGATTAGTATTCAGCCGAGGATTCAAAG59591157GAATACCAAGCAGCTTTTGGAATCTTTTTCTTTTTATAGTCAGCTTCTT
chr2:65555796-65555814
CCAGTGAATGGAGACTCAAAAGAAATATGT65555796TCATCCCAAGAAGGTTTTGAGTCCAAAGCACAGCTAACTAAAAGGAGAA
chr2:66021333-66021351
ATCATGAGTTGGATCCTGTGTCCATTTCTG66021333GCATATGAAGAAGGTTTTGGGTACCCCCAAGTCATAGGGACTGAGAGTG
chr2:69095921-69095939
CTCACTGTAGTGGGAGGAAGGCATTACAAA69095921GTATACAAGGAAGCTTTTGGTTTTAATGGATATATTCATGATCTTGATT
chr2:92105332-92105350
AGCTATTGGTATTAGGGCAAATTAAAGTGG92105332CCATACCAAAAAGATTTTGGCAGTATACATCAAACTAAAAATTCATGTA
chr2:102027729-102027747
TTTGGCCTTCCCAGCTTTTTGAGTGCTTCT102027729GCATACCAAGCAGAGTTTGGAAAACTGAGTCGGTTGCAGTGGCCCCTCT
chr2:106009256-106009274
GAAATGAGGCAGAAGAGAGGCAAGGACCCT106009256GCATGCCAGGAAGCTTTTTTTTTTTTTTTTTTTTTTTTCTTGAGACAGT
chr2:106578685-106578703
TGAGATCCGCAAAGGCAGGTACAACCTACT106578685GGAAACCAAGAGGCTTTTGAAAACTTAGGGTAAGTACAGCTGAAAGGAT
chr2:121903812-121903830
CTTTTCAGTAGAAAAAAAGACAGCTGCAAA121903812TCATCCCAAGAAACTTTTGGCAAGGATGTTGGCATGTAGAAGTAAGAAT
chr2:131080787-131080805
TATATCCAAAAACCCTGCTGAAGTTGTTTA131080787TCATACCTAGGAGCTTTTGGGGAGATACTATGGAGTTTTCTAGGTATAA
chr2:132424067-132424085
TGAACCAATTTCCAGTGTGCACATTTATTT132424067GCATACCTAGGAGCTTTTTGACCCTGTGTTGAGATGCCTAACCAGCTTC
chr2:141139067-141139085
TCCATAAACCTCATCTAGACAAGCCAGATT141139067GGCAACCAAGAAGCTTTTGCAGGGTATGTTTTCCATGTTTCAGAAGGCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCATACCAAGAAGCTTTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCATACCAAGAAGCTTTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.130 | 5.120 | search_plus_done; http://172.18.8.78:28018/match?q=GCATACCAAGAAGCTTTTG&k=3&no_gap=1&offset=0&limit=50
5.142 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).