GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 13:18:31, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:2187807-2187825
TTCCTCTCCACTGTGTGTTCCTGGAGTTAG2187807GCATCATCTTGGTTTTTACTCCCTTGCTTGGTTTTCTCAGGATCTCTGG
chr1:48134533-48134551
CGCTTGCACATCTCTGCTGTTGCACTGAGT48134533GCATCATATTAATTTTTACTTGCTCCTTCTGTAGACTAAACTCCTTGAG
chr1:62135234-62135252
AGACAAATGAGTAAAAAGACCTCCACACCA62135234GCTTCAAAGTAGTGTTTACCGCTAGGGAGGGAAGGTAGAGAAAGGATTG
chr1:69372878-69372896
CTCAATAATGACATCATTTTCTATATCTGG69372878TCATCATAGTAGTCTTCACTACAAAGGTCATAAAAGGAGACATCTGCTG
chr1:78450161-78450179
TCTTTCTTTCTTTCTTTTTTTTTCCAGAAA78450161GCATCATAGTTGATTCTACTCATCAAGATTTGAAAACTACCCTTTTACA
chr1:92676808-92676826
GATTTAGCTGTTTTTTAGTGCATTGAGTTT92676808TCATCTTAGTTGTTTTTACAGTGTGACGGAGGACTGAAGAAAGTTCTTC
chr1:101733618-101733636
ATCACAAATTAGAGCAGGCCCAGCTGCTGT101733618TCATCATAATAGTTTTTCCGAGGTTAAGCCCAAGTATGACCAGAGGGCA
chr1:110146148-110146166
AGGAACTGGCTCTTTATGTAATTCCCCGCA110146148TCATCATAGGAGTTGTTACCTGGTTTTCCAGAAAAATAGTGAAAAAGTA
chr1:111923742-111923760
CCAAATCCAGAAAGCTTAAACAATAGAGCT111923742GCATAATAGTAGTATTTATTAAAAAATCACAACTGTAAACATGAGAATA
chr1:166726207-166726225
GTGACCTTCTGTACACAGTTGGGAAGCCCT166726207GCTTTATAGTATTTTTTACACTTTTCTCTATGTTTGAGCTAGTAAAAAG
chr1:182761199-182761217
GAGATGACTGGGAAGATGATGCTGGTAAGG182761199GCATGATAGTATTTTCTACTGTCCTATACACATCAGGCAAGACTTCATG
chr1:183831642-183831660
TCTTTGGAATAGCGTGTATACTTTTGTTTT183831642GCATTTTAATAGTTTTTACCTTTAAGATCTCAACTTTAACATCTTAAAA
chr1:189781348-189781366
CAAAATCAGCTCAATCCAAATTATGAGTTA189781348GCATAATATTAGGTTTTACATTCCTCAAGAAATAAGGCAGAATGACTTA
chr1:194175603-194175621
TAATTCTAAAAATTTTCTTATTGTCTTGTT194175603TCATCATAGTATTTTTTATACTTTTTTAAAAATGTCAAAAATCTTGTCT
chr1:217642523-217642541
TCTTTATCTGAGGTTTATTGTCCTTAGAAA217642523GGATAATAGTAGTTTTTATTCCATCTTTCTAATTAGTAATTTAAGCATA
chr1:238552709-238552727
AAAGTGAATATAGGTAGGAAATAGATACAA238552709GCATCATAGTAGTTTTGAGAAAAGGGAAAGTGATCACCCATAATGCAAC
chr2:5383015-5383033
CTGGATACATTTACTTTCCATGTTTTCAGT5383015CCATCATAGCAGTGTTTACTGAGTGCTTGCTAAGTGAAAGGCACTCTAG
chr2:7081478-7081496
TTAAGATAGTGTTCAACACATTATTTTATG7081478CCATCATAGTTGTTTATACTTTGGAAAGATTTCCAGGTTTATTCATTTG
chr2:13649383-13649401
TTCAAGTTTTCCCATTTCACTGTGCTCTTT13649383GCATCACAGTAATTTTTTCATGGCATGTTTTAGGCCAACAGAAGTACCA
chr2:19731423-19731441
TGGAGTAATTACTCAAGGCTTCTTCAAAGG19731423CCATCATAGTAGTTATAACAAACCAGAACACTGGCAGGGATCTGATCTG
chr2:27195678-27195696
CAGTTTGCTATGGGATAGTACATTTTCAGA27195678GGATCAGAGTAGTTTTTATATGGATTAATTTGCCTTTGAAATCCATACC
chr2:48039408-48039426
GCTGTTTCATTTAGCATATCTCTAGCATCT48039408GTATCATAGTAGTTGGTACAGAGGTGTTAAATCAGTATCTAAAGAATAA
chr2:54051809-54051827
CGCGTCCGGCCGCTATTTGTAAATTTTTAA54051809GCATTTTAGTATTTTTTACACTTGAAACAAAAAATGTTCACCAAAAGCA
chr2:55115700-55115718
TGTATACTGTGGCAACCACTAATTTTTTAC55115700CCATGTTAGTAGTTTTTACCTTTTCCAGAATGTCATATAATTGGAACTA
chr2:69956888-69956906
TTTCACACGAAGTGATTTACAGTGACATTT69956888TCATCATATTAGTTTTTATTACTGGGGTGTGAATAAAATGTACTGTGTT
chr2:74297189-74297207
AACATCATTAACTGTCTGCAATTTCATATT74297189TCAGCCTAGTAGTTTTTACTCACTGTGTATGGATCTCTAAGCAGTATAG
chr2:75188970-75188988
TAGCCATCATAGCCCCTGTGGATTCAGTCT75188970GCATTATATTATTTTTTACTGGGTAAAATAAATGTTCTTATGTCCTTAG
chr2:81534322-81534340
TTTTTCTACTTTTTTGGTCTCTACATAGCA81534322GCATCAAAATATTTTTTACTTTATCTTAAATGTGACTTCTTTCCTGGTT
chr2:82259698-82259716
ATTTTTTCATTATAGTAAATACCCAAACCT82259698GCAACATAGTAGTTTATAATCATTATCAAGTATTATATATTGTGCATAA
chr2:91946782-91946800
ATGCATTTAGCACTTAATATTTTCCAGAGA91946782GCTTCATAAGAGTTTTTACTCTTTCTTATATATTTTGGTGCTGGTGCAT
chr2:99077053-99077071
CATTTTCATGGTTTGGGGAGACCCTTTCTT99077053GGATCATAGTAATTCTTACAATAATGCCTGTGCTCTAACCACCAGTTTT
chr2:103056077-103056095
GAGAAGTAGCTGGACTTGTAGGTCAACAGA103056077GCATGATAATGGTTTTTACATAAAAGGTAGGAGAAAGAGAAGAATCAAG
chr2:110304403-110304421
ATTCAGAGAAAGCTTTACATATAAAAATAC110304403TCATCATAGTAGAATTTACACTATAATAGGAAAAACATTGCCTACATAG
chr2:113757678-113757696
TTTCTGTGTCGGTTGGCAACTTGAAATTGC113757678CCATTATAGTAGTATTTACATCAAGAAAATTGACAAATACTACAAATCA
chr2:125659681-125659699
GCTCATTATGCATTGCAGTTTTATATAATT125659681GCATCATAGCAGTTTGTTCAATTGACTCTTTTAAGAAAAAGAAATGGAA
chr2:128875076-128875094
TGAAAGCATCATCATAACCTGTTAATGTAA128875076GCATCATAGTATTTTATAGCTGGAAAGTCTTCTTAACTGTTATTCTTTT
chr2:142405304-142405322
TTTTTTTTTTTTAAATAAGAGAGACAAGTA142405304GCTTAATAGTAGTTTTTAATAGTCATTGACTGGTTTTAACAGTCTAATA
chr2:155545693-155545711
TTAAATTGTTTAGGCAATATTCTTTCAGGA155545693GAATCACAGTAGTATTTACTGTGATGGCTACTGCAAATATATCCAATTT
chr2:165266297-165266315
CTTTCAGAGTTGGAAAGTTAGCTTCTTAGA165266297GCATCATAGTAGGATTTCCGTGCTATTGTGGAACTCCATTTAGAAATGA
chr2:167939959-167939977
CGATGCGGGCTCTTTTTCGGTTCCATATGA167939959ACATTATAGTAGTTTTTTCCAATTCTGTGAAGAAAGTCATTGGTAGCTT
chr2:168582287-168582305
CACAGTTGACCCCATGAACCCCAAACTCCA168582287GCATCATAGTAGTGTTCAGGGAGATGAAGACCTTCCTGACAGAACCATG
chr2:176232087-176232105
GCTGAAACTCTAAATATCAACCATGAAGCT176232087GCTTCATGGTAGTTTTTATGAAGTTATTTATTTTTTGTGAGACTGTAGG
chr2:195560538-195560556
GTCGTGGGAGGGATCCAATGGGAGGTAATT195560538GAATCATGGTAGTTGTTACCCCATGCTGCTGTTCTCTTGATAGTAAGTG
chr2:197837471-197837489
TTAGGATTTTTTTCTGATTGGTAGGTATCT197837471GCATCATACTAGTTGTTAAATATCTTAAATATCACCTTGCTTATTTCTC
chr2:206421014-206421032
CTGATTGGGTTCCTATGTTGTTTGTGCAAT206421014GCTTCACAGTAGTTTTTAGGAACAATTCAATAACATTGATTTCTATGCC
chr2:218986904-218986922
TTCACCTCTCAATGTGAGTTAGTGTTCTAT218986904TCATCATATTAGTTGTTACCTAGATACTTTGTTTTTTTCATTGTGTTAT
chr3:3957076-3957094
AGCCTAGTACCTACTAGTAGATATATAAAG3957076GCATCAAAGTAGATTTTGCCTTCTATTCACCACTGCAAGACCAAATACA
chr3:13765953-13765971
CATGCAGGAAGTAGAACTCACAAAGATATT13765953GCCTCATAATAGTTTTTAGAAGCTACATTACTTCACCTTTCATATTTAG
chr3:16253056-16253074
CTCATACATTCTCTATTCACAGCGCTCTTA16253056GCATCTTAGTAATTTTTTCACAGCACCCATAGTCCAAAACAAATACCTG
chr3:27199748-27199766
ATTATATGCCAAATTATATAGTATAGACTA27199748GTATCATAGAAGTTTTGACTAAAACCTGTGAGCAAATTTTTATATGATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCATCATAGTAGTTTTTAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCATCATAGTAGTTTTTAC | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.418 | 6.408 | search_plus_done; http://172.18.8.78:28018/match?q=GCATCATAGTAGTTTTTAC&k=3&no_gap=1&offset=0&limit=50
6.430 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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