GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 14:18:07, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:980189-980207
GCGCGTGCACAGATGTGTGTCTGCAGAGGG980189GCGTTAACTGTACGGTTTGGAGGAATGTGGGTGAGAACGCATGCTGACG
chr1:12581127-12581145
AGACATATGTTGTATTCAACAATGTAGAGG12581127ACATTGCCTGTAAGTTTTGTTGGAATTTCAGACAGAGCAAAGTTAGGCA
chr1:34743782-34743800
TTTTCCCAGTTTGTTAGTTGACTTTTGAGT34743782TCATTTACTGTAATTTTTGAAGTTTAGAACATTCAATTTTTCTACTGAA
chr1:36750291-36750309
ATCTGCAGAGACTCATTTTCCTGCATCTGT36750291GCAATGACTGTGAGTTTTGGATGCAGTATGCCCAGGGCCCTCACTAGTA
chr1:39858168-39858186
CAAAGATGAAGATAAATATTTTTAAAAACA39858168GCATTAGCTGTAAGTTTTCAGCTCTTTTTTTAATGGAATCATACTTTTA
chr1:39876457-39876475
TCCTTGCAAGAGAAGAAGGAGTCCAGTTCT39876457GCATTAACAGAAAGTTCTGGTCATTTGGACCACAGGGAACCTCAGTCAG
chr1:51358953-51358971
TGCTGGTGTCTGGGCATATATATGAGTTAG51358953GTATTTACTGTAATTTTTGCATTCAGGGCTTCTTTGTATCTGTCCTTGG
chr1:59219161-59219179
GAACAAAAGGGAGGGGAAAAACACGAACAG59219161ACATGAACTCTAAGTTTTGGAAATGATTTCATGGACTCCTATTTTCTGA
chr1:62301670-62301688
TCATAATGGTTGCTCTGATGCTCTTAACTG62301670ACATTATCTGTAAGTTTTATATTTTGAATAGTGCACATATTAAGTCAGA
chr1:62918321-62918339
TCACTAATGGAAATCCTTAAACAGTCCTGA62918321GCGCTACCTGTAAGTTTTGAATGGAATGGGTCTAAGATAGACACTGGGC
chr1:71414088-71414106
TGAATAAGGATGTGTTTGCTTCCCCTTCCA71414088CCATTAACTGTAAGTTTCCTGAGGTTTCCCCAGCTCTGTGGAACTGTGA
chr1:72426532-72426550
AGTCAGCTCTTATAAAATTATCTTTTATTA72426532AAATGAACTGTAAGTTTTGTAGAAATGCAAAAATGTCTCCACTGAGACA
chr1:80858297-80858315
TGTTTAATATTATTTGCCAACAAGTGTTTG80858297GATTTAACTGTAAGTTTTACTGGACTCTTTGTGTACTGATAATTATCTT
chr1:81486345-81486363
GAAGGTCTTGTTCTTTCAAGCTGTGAACAG81486345CCATTAACTTTAGGTTTTGTCTCTGCAGGAAGGAAAAAACAAACATGCC
chr1:83469086-83469104
TGGAACAATGAAAAATTCCATGTTATCTTG83469086GCATTAACTGGGAGTTTTTAGATATTATTTTATTTTTATTCAGATAGAT
chr1:95326750-95326768
TATTATTTATGTATGAATAACAAACACTAA95326750GCATTAACTAAAAGCTTTGATGTAATTACATTGGAAGAATGGGAACATG
chr1:108073394-108073412
GCCAGGTTCTCATTCCTCCACGTTCCAGAG108073394GCATTTACTGGAAGTCTTGATTCATGACTATGTCCCTGAGCAGCTTCGG
chr1:179899525-179899543
TCAGAAAATGCAGCCAACTTCCTATCTCTG179899525GCTTTACCTCTAAGTTTTGTTATTGAATCAGCAGTTCTGTTTTTTTAAG
chr1:188123682-188123700
TTACAGAACCAAAGAATTATTTTGGAAATA188123682GTATTACCTGCAAGTTTTGCTTGCAATGGATAATACTGGTCTAGTAAAT
chr1:189159065-189159083
GTAGCCCTTCTACTAGGGTGGTTTTTCTCA189159065GCCTTAACATTAAGTTTTGTCTGGAAGATTCTTTGTTTTGGAGGTTGTC
chr1:189405923-189405941
TAGTGTCATAGCTATTTAAATGATAAGTTG189405923ACATTAACTATAAGTTTTGACTGGTAAAGATTTTACTTTTGTAATATAT
chr1:194990329-194990347
CAATGAAATAGGAAATAGAGAATAGAGATA194990329GTATTAATTGTAAGTTTTTGTATCTACTTGCAATAAAGAGGGAAGAAGA
chr1:210530351-210530369
GGAGCTGGGAACTGGACAGCCTGTCTTGAA210530351GCATTAACAGTGAGTGTTGTGGAACAACCAAGGCTCCAAACATTCTGTT
chr1:233162954-233162972
AAATGATGCTTACAGGTCAAATTACATGAA233162954GAATTAACTGTTAGATTTGGCAATATGGAGGTGTATGTTGATCTTTGCA
chr1:245755823-245755841
CCAAATGGAAGTAAGATACGAGAAAAGTCT245755823GTATAAACTGTAAGATTTGTAAAACTTGTAAAGAAGTTGTGGTGGTGTT
chr2:9061201-9061219
TCCAGTCTGACAACTTCTGACTTTTCACTG9061201GCATTTACTGTAAGTATTTATACGGTCAGATTTAACCTGCCATTTTGCT
chr2:14432858-14432876
GCCACCTGACTGCTTGCATTTTTAAAAACA14432858GCATTAATTGTAAGATTTTAATTTTAGACATATTAAAATGTAGATCAAT
chr2:17258157-17258175
TCCAGCAGACACATCCTAAAGACAATCTGA17258157GCTTTAACTGTATGTTTTTATTGAGCTGCTTCTGTGTATTCATGTCTGG
chr2:27401954-27401972
AACTTCAGTCTTTCATCATTAATTATAATA27401954GTATTAACTGTGAGTTTTTCATAAGTGCCTTTCATCAGGTTGAGGAATG
chr2:32033699-32033717
GGAAAGTAAGCACTCTCACTATTAAATGTA32033699GCATTAACTGTAGGTCTTTCATAGATGCCCTTTGACAAATTGGAAGAAT
chr2:35001618-35001636
TCTAATTTCAAAAGTCATAAACTTCTGAAG35001618GCATAAACAGTAAGTTCTGAGATATAAAGGCAGGATCACAAAAAGCTAA
chr2:50099704-50099722
CAACCATACCTTGTTCTGAATTTTAGCATG50099704GCATTAGCTGTAAGTTTTTAATAGGTTTCCTTTATTGATTCTACTTCTA
chr2:56533231-56533249
GAATATAACAGGAAGGCTGTGCCTGTCTCT56533231CCTTTTACTGTAAGTTTTGCGAAACTTCCAGTGTATGAGATCCTTTTTT
chr2:56825369-56825387
CTTTTTTAGTATATGTGCTGCCAAAGAGAG56825369GCATGAACTGTAAGTTTTAATAGGATAGATTTTATAGTATATGAGTTAT
chr2:60101394-60101412
GCCCTCTGCCCAATTCCAACACTTGCCTGG60101394GCTTTAAATGTTAGTTTTGCATAGAGCATTTGCAATCATTTGGGTGAAA
chr2:61273009-61273027
TCTCAAAGGTAATAAATTATGAATAAGTTG61273009GAATTATCTGTAAATTTTGATATTCATAAATGCAGTATTAAAAACTACA
chr2:62494626-62494644
AGAGTCAGATACAAAAAAGGTCCTGACAGA62494626GCAATAACTGTAACCTTTGGGCTTATCTTTTCTACCAGAGAGAAATCAT
chr2:65233197-65233215
TGAGTAAATGCTAGAACACTAATTGTCTCT65233197TCAATAACTTTAAGTTTTGGCAAATATGGCTGCTGTGACTTCTCCACTG
chr2:66396445-66396463
CAAAGAAACAAAGGCAGGTTGTCATTCTGG66396445GCATTAAATGCAAATTTTGAAGTCACTGTAAGTGCCTTCACTGATTGAG
chr2:67099918-67099936
ACAATGTATTTCTAGAACCTCATAATGATA67099918GCATTTACTTTATGTTTTGGTGCTCTTCAGCTGAAAAGAAAAAAAAATG
chr2:67597283-67597301
ACCCAAATACTCCATCATATTGATTACTAT67597283GGATTAACAGTAAGTTTTATAAATGGGTATTCTGAGTCATCCAAATTTG
chr2:74861804-74861822
AAAGCATTCAGTCTTTCACCATTAAATATG74861804GCATTAGCTGTAGGTTTTATCATGAGTGGACGTTGAACTTTGTCAAATG
chr2:79109232-79109250
ATTCTTAATTATTTTTCTTGGTCAATAAGT79109232GCATTAAAGGTAAATTTTGTGATATCTTGCATGCAGAAAATTCTTAATT
chr2:83540786-83540804
TAAATTTATAATCTAAAGTTGAGACTGCCT83540786TCATCAACTGTATGTTTTGTGAGTTCTGGGATTGTAAAACAATTTTAAC
chr2:85241168-85241186
GTTTTCAGTGCTCAGTGGTACACAGTCTTT85241168GCATTGCCTGTAAGTTGTGCCTGTAATTTTCAAAAAGTTGAGAAAACAC
chr2:86926740-86926758
AGTATCATCATCTTGAGCCCTCATCAACAG86926740GCATTAAATGTAATTTTTTGTTTGTTTTTGAGACGGAGTCTCTCTTTTG
chr2:87256979-87256997
TTAGGAAAATCTTTATCAAACTATTTTTAT87256979GTATGAACTGTAAGATTTGGAATAATTCCCAGATGGGATGAGCTACACT
chr2:99014997-99015015
TTTCCTCCTCAAAATGTATATATTTTAAAA99014997GCCTTAACTGTTAGTTATGCCTGCATTCATATTTGCACAGGAAAAATAA
chr2:105540977-105540995
CTACTCTGATGCTTTTGTTCTCATTACTTC105540977GGATTAACTGTAAGATTTGTCTCCAAGAAGCATCACATTTCACAACTTT
chr2:117139286-117139304
AAAGTGTCTAGTTTCTAATCACTAAGTGTA117139286ACATTAACTGTAGGTTTTCTGAAGGTGTTCTTTATCAAGTTAAGAAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCATTAACTGTAAGTTTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCATTAACTGTAAGTTTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.092 | 6.081 | search_plus_done; http://172.18.8.78:28018/match?q=GCATTAACTGTAAGTTTTG&k=3&no_gap=1&offset=0&limit=50
6.104 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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