GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 09:28:17, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:355338-355356
CTCCTATCTTATCTAGAAAATAACTAAATT355338GCTTTTGATTTTACAGGTTTATATGTGGAAGAGACTTGCCCTGTCTCAG
chr1:10568545-10568563
TGGGGTTACAGGCGTGAGCTGCCGCGCCCG10568545GCCTTGGATGTGCCAGATTTTTAGATTGGGGGCCCAAGACTGACATATG
chr1:13907073-13907091
GTGTGTTACTTATTCCTGGGCCATAGAGCT13907073GCCTTTGCTGTCAGAGATTCAGTTGTGGGTATCTCAGCTCTGGAACATG
chr1:14443529-14443547
CTTGGATTGTCTGTAGGAAGTAACTAACTT14443529GCTTTTGATTTTACAGACTCATAGGTGCAAGGGACTTGCCTTGTCTTGG
chr1:18267208-18267226
AGACCATTTACATATGTTATGCACTATTGT18267208AGCTTTGATGTTACAGATGAGATAACTGAGGTTTAGGGAATTCGGGAAA
chr1:20329667-20329685
CTGTGAGAAGTAGCTCACGGTGACAAAGCT20329667GCCTTTGCTTTTACTGATTTGCAAATCAAAGAAGGGGGACATCAGGGGA
chr1:28280713-28280731
GGAATTGAATCCAGGCCGCCTGGCTCCAGA28280713GCCTCTGATCTTCCAGATTGATGTCCCACCCATGGGAAAGATGGGAGGG
chr1:30625604-30625622
TTGCCATTGTATCTTGGAAGTAACTAACTT30625604GCTTTTGATTTTACAGACTCATAGCGGGAGAGAATTGCCTTGTCTCGGA
chr1:34671567-34671585
GCAAAGAACAGTGAATGTTTATTTACCCTT34671567GCCTGTGATGTTACAAACTTGCAATTCTAACAACTAGAAATGTTGTTGA
chr1:44410823-44410841
GTCTCCTGCCTCTCTTTCTTCCTTCAATTT44410823GTCTTTCATGTTGCAGATTTTTCTAAAATGCAAATGTAATCATCATTGC
chr1:47299188-47299206
TAGTATACAGTGGTATACACAACTCCTTTT47299188GCCTTTAGTCTTACAGATTCCACTCATTTCCAAAGGTAGTTAGGTCAGC
chr1:56330520-56330538
CCCCCACTGTATCTTGGAAGTGACTAACTT56330520GCTTTTGATCTTACAGACTCTTAGGCGCAAGGGACTTGCTTTGTCTCAG
chr1:56432929-56432947
ATGGTTACATTTTTCCTTTTATGGTTGGTT56432929GCCTTTGTGGGTACAGATTTCTACTCATAAGGTTGATATAAAACATCCT
chr1:57089678-57089696
CTGTACCACCCATCTTGGAATAACTAATTT57089678GCCTTTGATTTTACAGATTCATAGGTGAAAGACACTTGCCTTGCCTCAG
chr1:57495510-57495528
CCTCCATTGTATCTTGGAAGTAACTAGCTT57495510GCTTTTGATTTTACAGATCATAGGCAGAAGGGACTTGTCTTGTCTCAGA
chr1:58609876-58609894
CCATTTCTGTGTATATAAAGGCATGGGATG58609876GCCTTTGATGGCCCAGATTCTGAAACAATAATGCCCTAGGAGGAGTTCA
chr1:59018676-59018694
TTAGACAGAAGTTCAACAGACAACAATCAG59018676GCCTCTGATGATATAGATTCAGAATGAGAACCAGGTGAAACAGCCACAG
chr1:60200579-60200597
GTGGACAAGATCCTTTTATGCTCTGTCCTT60200579GCCTCTAATGTGACAGATTATTTTGTAATTACCTGGCAGAGATAAGTTT
chr1:64425678-64425696
GGCCTCTCTAATCCCTTAGCATCACTATCC64425678GCTTTTGATGTCACAGAGTCCCCCAAATGCACTGCTGTGACAGCATGTA
chr1:65749817-65749835
AGTCACAAAAGTGCTCTCCACTGCTGCCAG65749817GCCTCTGATGTTACAGCTCCTGGGCAGTCCTTTCCTTTACCTCAGTGAT
chr1:66333601-66333619
TCTCTCTAAAAATCCCTTTATTTCTCCACT66333601GGCTTTGATATTACAGAGTCACTAGTGCACTCGAGAGTCTACGGTCAGT
chr1:66450528-66450546
CTCAGCATGCTTACATATCAAATGTCTCAA66450528GCCTTTGATTTTACATATGTAATATTGCAGTGTTTTGATTATATGAAAT
chr1:71516024-71516042
TATCAGTACATAATTGTGGTCACTTTGTTT71516024TCCTTTGAGGTTACAAATTGGCAACTTTGTTTAACAGTCAATAAACCAG
chr1:71757176-71757194
TGTACCCTCATTGTATCTAGGAACTAACTT71757176GCTTTTGATTTTACAGGTTCATAGGTGAAAGGGACTTGCCTTGTCTCAG
chr1:73411856-73411874
ACATCTATTGTGCACTCTTTGTATAAAAAG73411856GACTTTGTTGATACAGATTTAATATAATGAAAGCTTTTATGTTGAAGGG
chr1:73528263-73528281
TACTTATTGTGTCTAGTAAGTACCTAATGT73528263GCTTTTGATTTTACAGGTTTTTAGGTGGAAGGGACTTGCCTTGTCTCAG
chr1:75032767-75032785
TACAAAAGGCATGTGCCTTCTCAAATTCCA75032767GCATTTTATCTTACAGATTTAGTTTCAGTTATTTTGAAGAGCTTAGTTT
chr1:79687131-79687149
CCCGCATTGCATCTAGGAAGTAACTAACTT79687131GCTTTTGATTTTACAGACTAATAGGCAGTAGGGGCATGCCTTGTCTCAG
chr1:81487620-81487638
AATGGCCCCAAAAAGACGATTATACCAATT81487620GCCTTTGATATTTGAGATTTTTACCTTAAAAAGGCCTGAGGGTCAAGTG
chr1:83064456-83064474
TTCTCACTTAGCCATATGGAACAAATATAT83064456GCCTTTAATGTTATAGACTTGATCAAGGTAGTGTCGCTTGAAATAAATA
chr1:85423432-85423450
TGTTTTTTGTGTGGTATTCTCAGGGAGCTA85423432GCATTTGATATTACACATTTCACTTCTTTTTGTCTAGCTCTTCGTTCCA
chr1:92335940-92335958
GAATGCTAGAACAGGTAGTATCTACTCCGA92335940CCCTTTAATTTTACAGATTAGCAAACCAAAAATTAGAAAGGCTCAACGA
chr1:93653755-93653773
GGGAAGCCACCTATTTCAGGCCATGTATGA93653755GCTTTTGATGTTACATATATGCCCACTATTGAGACTGTTTTGCAGAAAT
chr1:95944415-95944433
CCCCCTTTGTATCTAGGAAGTAATTAACTT95944415GCTTTTGATTTTACAGGTTTATAGGTGGAAGGGACTTGCCTTGTCTCAG
chr1:100850078-100850096
TGGCCAATATTTTGCATTAAATATTCATTA100850078GCCTTTGAGGTTAGAGAGTGGGTTTCTTCTCCCCTTGTCACTGCATTGC
chr1:102328207-102328225
AGGAGTCTAGGTGCAGCACAATCACCTGTT102328207GCCTTTGATAATACTGATTTCCTGATCCCACCTCACCAGAAATGTGATT
chr1:106520092-106520110
ACCCAGTTGTATCTAGGAAGTGACTAACTT106520092GCTTTTGATTTTACAGGTTGACAGATGAAAAGGACTTGCCTTCTCTCAG
chr1:106555074-106555092
ATTCTGATCCAACATTCCACTTCCTTTATG106555074GCCTTTGAATTTACAGAATATATTTCATGTTCCTGGATGTTTCACTCTG
chr1:106613761-106613779
ATATTTAATATAAATACTATTCTTTTCTTG106613761GCCTTAGATATTACAAATTACTAAAAACAAAGAAAAAACGTGAAATCAA
chr1:107780965-107780983
CCCCCATTGTATCTAGGAAGTAACTAACTT107780965GCTTTTGATTTTACAGACTCATACTTGCCTTGTCTTGGATGAGACTTTG
chr1:108053912-108053930
ACTCCATTGTATCTAGGATGTAACTAACTT108053912GCTTTTGATTTTACAGGTTCATAGGTGGAAGGGATATGCCTTGTCTCAG
chr1:108939752-108939770
CCTCCATTGTATCCAGGAAGTAATTAGTTT108939752GCTTTTGATGTTACAGGCTCATAGGCGGAATGGACTTGCCTTTTCTCAG
chr1:113934643-113934661
GGTGCCTAGCGGAGTGAAAGCTTCTGTAAC113934643GCTTTTGATTTTACAGAATTTTGTTGAAGTGGTAGGTTAAAGGAGCCTC
chr1:114497257-114497275
TTCCCTTTTCACTCCAAATAGTTGTTTGAT114497257GGTTTTGATGTTTCAGATTCGTTATATTTCACAAACACAAGGCTTGCCA
chr1:114504215-114504233
CTTATCTAATTCACTAAAAGTTATACTTAA114504215GCCTTTGCTTTTAAAGATTAGAATTTTAAAAACAAGTTTTTTTTCCACC
chr1:118782359-118782377
CCTTCATTGTATCTAGGAAGTAGCTAAATT118782359GCTTTTGATTTTACAGGTTTATAGCCAGAAGGGACTTGCCTTTTCTCAG
chr1:120533216-120533234
ATAGCACTTGTTAGAGATTGTCTACTCTAA120533216TCCTTTTATGTTACAGATGAGGAAGTTGAGAGCCACATGGCTGACTTGA
chr1:145078028-145078046
AGATTGATAAATTACCTAGTTTTGATTATG145078028GCCTTAGATTTTAGAGATTCAGACTTTGGTTTTGCCCATAGACACGTGG
chr1:152057921-152057939
CCTGCCAGCTCTTGGGGACTTTCATCTTCC152057921TCCTCTGATGTTACAGGTTCCTTTGTTTCAAGTTGTATCTTGAGGGAGG
chr1:154022253-154022271
GCCTTCTCCTGCTATGATTCCAAAAAACTG154022253GCCTTTAATGTCATAGATTTAAAAGACTGTTTCTTTACTATCCCCTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCCTTTGATGTTACAGATT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCCTTTGATGTTACAGATT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.060 | 6.050 | search_plus_done; http://172.18.8.78:28018/match?q=GCCTTTGATGTTACAGATT&k=3&no_gap=1&offset=0&limit=50
6.073 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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