GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 00:30:01, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:56797385-56797403
CAGGTTGAATCCCATTTCTGCTGCCTTCTA56797385GCTATGGAACTTGAATAAGCCACTGAGCCCCTGTGAGCCTCCGTTTTCT
chr1:77306273-77306291
CTGGAAGGCAACCAAATTTCTTTAAGGAAA77306273GTAATGGAAGTTGCATACTTCCCTTCCATTCATACTCTTTTGGGAAATG
chr1:77475065-77475083
GAGAGAGAATTTTTGTTCATGGGTATAGGA77475065GCCATGTAAGTTGTATAATTTCACTATAAACATGGCACGCAGGGAGAGG
chr1:84720497-84720515
ATCAAAACACAGTGATAGCCTGGAGAAAGG84720497GCTGTGGAAGTTGCATCAAGGAAAGAGTCAGGGAACAGTTCACAAAGAG
chr1:85290275-85290293
CAGATCACCTTCCTGGGCCTCCATTTCTTA85290275GCTATGGAAGGAGCATGATGATATGACCCAACAGGATTTTTGTGAAAAT
chr1:88535492-88535510
GGTTATCACACATTCGTAGCACTGCTCAGT88535492GCTGGGGAAGCTGCATAATGGAGCAATGCCAGGAGGAGAAGCCTGTCAC
chr1:94101572-94101590
GGTCTCCGGCAGCCAGGGCACTTATTCTTG94101572GCATTGGAATTTGCATAATTACTCCTTTTTAAATATGCTGGGTGACCTA
chr1:166498892-166498910
AATCTTTCTCACTGTTTCATTTATAATTTT166498892GCAATGGCAGTTTCATAATTTTAAATAATAACACAGTTTTCATAAATTA
chr1:173327125-173327143
ATGTTCATGTCCTAATCCCCAGAACCTGTA173327125ACTATGTAAGTTGCATGATAAAGGAATCTGCAAACATGATTAAGTTAAG
chr1:182259417-182259435
CCTTGGAGGTCTCATTTGGTTCTGGTGTCT182259417GCTATGCCACTTGCATAATTGGTCATGAATCACTTCAGGTTACGGTATG
chr1:187605623-187605641
GAAAAATGTCAGCTTATCCTCTTATGAAAT187605623GCTATGTAAGTTGCCTTATTTACACTCCACTGCTGACATTCCTACATTT
chr1:188706664-188706682
ACACTGGTCTTTTCCTGCCTTTGAACTCAG188706664GCTTTGGAAATTACATAATCAGCTATCCTGGAGTTCATTCAGATTCAGA
chr1:193663806-193663824
ATGTAAATTGACATAGCCATTATGGAAAAA193663806ACTATGGAAGTTCCATAAAAAATTAAAAATAGAACTACCCTATGATCTA
chr1:195071731-195071749
ACCCAATCAGTACTTTTGACCTTAGAAAAA195071731TCTTTGGAGGTTGCATAATGAAGTCTATTATAAAATGTACAAGTTAAAA
chr1:210921894-210921912
ATAAAAAGAACCAATATTCAACGTTATGGT210921894ACTATGGAAGCTACATAATCATAATAATAACTCTATCAAAATACATTGC
chr1:216381276-216381294
AAGAAAGAATAATATTTGGTGATATAAATA216381276GCTATGGATGTTAAATAATCTAAATATTATCAAGAAACGATTTGAATAT
chr1:221878780-221878798
GCGATATTTTGAGTCTTATAGCAGTTTGGG221878780GCTATAGAAGTTGCAGAAATTAAGATTAGGATTAGGCTAATAGTTGCTT
chr2:4807180-4807198
ATATGCCATTTTTATTCATGTTGAGTATCA4807180GCTATGGACGTTCCATATTGCCTTTCTGTATAAATAATTAGCTTCAACT
chr2:8024414-8024432
CTCCATGCATATGGATTGTCAAACATCAGC8024414ACTAGGGAAGTTGCAAAATTCGCACCCTTTCAAATAAAAGTTACAAAAT
chr2:9504021-9504039
CCTGCAGCCTAGCATTACTTCTTTTCCAAT9504021GGAATGGAAGTTGCATAATTGAATTATTAATTAGTTCTGGGGAATCATG
chr2:9798053-9798071
CTCCATCCAGCACTCACTGTCAATGTTACT9798053GCCATGGAAGTTGGTTAATCACTGCTGCGAGGTGGCCTCCAGGGGTGGT
chr2:16429222-16429240
GAAACAACACCCCGACTTCCTCTCAGCATT16429222GCTGTGAAGGTTGCATAATTGGACAAGGTGTGTGAAAGCACCCTGGGAG
chr2:21569932-21569950
GTCTGTAAAGGTAAAGGATTTAGGAAATGT21569932TCTATGGAAGTTCCGTAATTCTTGTTTTAAGACACAGCTGATGTTTCAG
chr2:21623115-21623133
CAATTCACAAATATTTGGACTACAAGAAAG21623115GCTATGGAAGATCCAAAATGACATAGATTAGCACAAGCAAAGATTCAAA
chr2:21624461-21624479
GTTTATACTACATACTAGCATATTAAAAGC21624461TCTGTGGAAGTTGCATAAAGAAATCTGCTTAATTTTGTTTAATTTAGAT
chr2:59043011-59043029
TATAAATAGTGCCCATAACTAGATATTTCA59043011TCTATGGAATTTGCATATTTTAGAAGACCATTACCCAGGGAATCTTGGT
chr2:62692406-62692424
GATCTCTTTCACCGCCTCAGTTATAATTTT62692406GCAATGGCAGTTTCATAATCATGAGAAAAACATCAGAAATTTGTGGAGG
chr2:72043596-72043614
CTACATGTAGCTACTGTGTACTAAAATGTG72043596GCTAGGGCAGTTGAATAATTGAGTTTTTAATGTTATTGAATTGTAATTA
chr2:77326901-77326919
GTTTGGGTTGATAATGATTACTAACTGGAA77326901GCTATGGAAATTGCATATTAATCTTCAAAGTATTTGAATATAATAAAAA
chr2:99978558-99978576
TGAAAACTATTTTTTTTGCTGTTGATAAAG99978558GCTATAGAAGTTACTTAATGAAAAATTTATTCTTCCTTTCTGATAACTC
chr2:102182875-102182893
TGATGGGATGGCAGGGTCTAGCCTAGAGGA102182875GTTATGGAAGGTGCATATTTGCACTTTTGATTGTGAGCAAGCAGTGCTG
chr2:112340204-112340222
TCCCCATACAGAAGAGCCTCATCAGGATCA112340204GCTATAGAATTTGCCTAATGCAAATGGCATTCAGGGCCTCTTGCTAAAA
chr2:127793875-127793893
TTTTCTATTCAGACAGGAGCGAATTCCAGG127793875GCCATGGCAGTTGCTTAATGCTGCACAGCACTCTAGATTTGAAAGCTAC
chr2:141631159-141631177
GATATTTTTCACTGTCTCAGTTATAATTTT141631159GCAATGGTAGTTCCATAATTTTAAATGATGACTAGCACAGTTTTTATAA
chr2:144180777-144180795
ACAACCTTAGAAGGCAGTGGTATGTTGACA144180777GTTATGGAAGTTGCAATATAGAGCCAGCTTTAAGAGGATGTCTTCCCCA
chr2:145400067-145400085
CTGCTGGATCTCATCAGTATCTGTGGATCA145400067GCTAGGGAATTTGCATAACTGTAAATAGGAAACTAATTCCTACCTCAGA
chr2:149543929-149543947
GGCTTAAATGGAATAGCAGAGACAACAGTA149543929GCTATGGAAGTGACATAACCTAAAACACGTGGCTCTGACCTGTGCTGAT
chr2:170345373-170345391
TAAAGTGAAATAAAGAATTCATTCAATATA170345373GCTAAACAAGTTGCATAATTAATTAATTTAAAAGGTTATTTTTCTAGTA
chr2:179746059-179746077
GGGATGATGGACATATACTAAAACTGGAGT179746059GCTATGGTGGTTGCATGATTCTATAAATATAGGAAAAATCATTGCATTA
chr2:179898002-179898020
CAAAAATTAATACAAATATGAAACCAATGT179898002GCTATGATATTTGCATAATGTTTACATTATTTTATATATTGTAAGTCAT
chr2:186954732-186954750
GATGGCAACTTTATGTCTAGCCCTGTGTGA186954732GCTCTGGAAGTTGTGTAATCTACCTCTTACTATTAAATTTTTCACTTGA
chr2:191808416-191808434
AATTTTCTGTATTATATGTTGGAGGAGCCT191808416GCTATGTAATTTGAATAATAAAGTGGCTATGAAAGTGCTTTGAAAAGTT
chr2:194705650-194705668
ATGTAAATATGTAACATTAAGTCTTTATTT194705650GCTATGAAAATTGCATAATGAGTGAAATTGACAAAAAGATTAAGTCCAT
chr2:197522797-197522815
TTGATCCTGTGGGGAGCGATTGAGATTTTT197522797GATATGGAAGTGACATAATGAAAACGGGAAAACAACTTTAGCAGTATTA
chr2:207407591-207407609
CATATATAAAGAATCTGTTTTCTTACAGAT207407591GATATTGAATTTGCATAATTAGAAATTTGTATAGTTGTACATGGTTCTG
chr2:212849130-212849148
GAAAAAAGTATCTTTATAATAGCATATTAT212849130GCTCTGAAAATTGCATAATTTACAGTATTATAATAAGCCATTTTCAAAG
chr2:226274983-226275001
CTGGACGATTAAAATGAAAATATATTATCA226274983GGTATAGAAATTGCATAATTGATCAACATTTTCACAATTGCATGTATTT
chr2:228244349-228244367
TATTTTCCTGTTCTATCGATATTATTACCA228244349GCTATGGAAGTTTCTTATTTTGAAATTGTTCAACAAGAAAATGAACACG
chr2:228391814-228391832
ATCTCTCCTTAATTGTAATAGCAATAGTCT228391814GATAGGGAAGTGGCATAATGTAGTGAAAAGAACCTGGGCTTTGGAGTTG
chr2:235452289-235452307
GGGTAGTCAGAGGAGAGGCCAGAGTCAAAT235452289GCTATGAATGTTGGATAATGAGTCGTCCAAGTAGCCAAGTCAGAGAGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCTATGGAAGTTGCATAAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCTATGGAAGTTGCATAAT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.413 | 5.403 | search_plus_done; http://172.18.8.78:28018/match?q=GCTATGGAAGTTGCATAAT&k=3&no_gap=1&offset=0&limit=50
5.425 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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