GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 06:37:36, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:27766937-27766955
ACAGCTGTAGTCTCAGCTACTCAGGAGGCT27766937GATATGGGAGGATCACTTTAGCCCAGGAGGTCGAGGCTGCAGTGAGCAG
chr1:30093964-30093982
TGTCTTTTCTGAGCAGCGATTTACAAGGCT30093964GCAATTTGAGGTTCAGTTTCTAAAGGAAGACAGGAGACTACTGAGATGG
chr1:54874298-54874316
TATCAACTTCATGGCTGCAACACAAGCATA54874298TCTATTTGAGCATCAGTTTCTTCACCTGTCAAATGGCAAAGGGAGGTTA
chr1:62020024-62020042
CAGGAAGGACTGAAGCCCCTCTGCAGATTT62020024CCCCTTGGAGGATCAGTTTCCTAGGCGATTTGTCATGGAGAGGTAGAAC
chr1:62050668-62050686
TTCCAGCAGTATGAGTTGGGAAAGTTAATA62050668GCTCTTTGAGCATCAGTTTCTTCTTTTGTAAATAAAAAGAAATATGCCT
chr1:86072113-86072131
CTTCCCTTGTTTCTGTTGGAAAGTGGTGCA86072113GCTATTGGAGGATGTGCTTGACTGAATGTGCTCCCTCAGCTTTTCAGTC
chr1:88165507-88165525
AGTTTTACGTTTCAACACGTATTTCACTTA88165507GCTATTTGAGCATCAGTTTAACTAGACTGTAATCTCCCTGAAGGCAGTG
chr1:88556307-88556325
AAAGAAGAAACATTTGAAATTATTATGAGT88556307GCTATTGTAATATCAGTTTAAAAGTAAAATATTAAGCCACAGTTATTTT
chr1:96486477-96486495
GGCAAACAGTTCTCCATAGGTTAGGTTTTA96486477CCTATTGGAAGATCTGTTTATAGTCACTTAGCTGGAACAGGGGGTTCAA
chr1:96666944-96666962
AATTTAGAAAATAAAAAATAAAATTTTGTT96666944GCTATTGGAGGATATGCTTGTGTATAAAGAAGATCCAAAAGAGTCTACA
chr1:98405756-98405774
ACAAAGATCTGGGCACTAGGTGTGCTTATT98405756GCTATTGGAGTGTCATTTTTCTAGGTCTTCTCAGCTGACAGAGCAAAAA
chr1:98520326-98520344
GATGTGCATGTTTCTGGAAGCATTTCCTTA98520326GCTATTGGAGGAAATGTTTACTAATATTTCAGGTTGTAGACACCAATAA
chr1:100550796-100550814
CTTTAACAGCTCAAGTAAAATTTGAAACTT100550796GCTATTTGAGGATCTGGTTTGTGTTGACATATTTTTTAAGCACCTGAGT
chr1:104713465-104713483
AAAGAATGATCTGCTATAAACATGGGAAAA104713465GCCATAGGAGGAACAGTTTCTTTCTTTCTTTGAAGAGAGTGGGTGGAAT
chr1:111802750-111802768
CAGCATGAAACATCTGACATCATTGTAAAA111802750GCTATTGTAGATTCAGTTTAGAAGTTCAGCATTGAAAATCAATTATTTT
chr1:115682566-115682584
ACATCGGAGTGCTGGGGCTCTGGGAGCTGT115682566GCCATTGGAGGGTCAGTTGAAGAAATGGGGATGGTGTAGACTGGAGAAG
chr1:152558026-152558044
CTTTCTCCCTTGGTGCTGGTGCTTGTGCCT152558026GCCATTGGAGGATCTGTTAGGTGGGCTGCCCAGTGTGGCTCTACCCATC
chr1:157678294-157678312
TTTGTGGCATCTCGACATTGTTATAATTTT157678294GCTATTGGAGGATCTCATTGTTTAATCTTATTGCAGAACCTCTGAACTG
chr1:160563273-160563291
AACCTTGCATCCCAGGGATGAAGCTGACTT160563273GATAGTGGAGGATAAGTTTTTGATGTGTTGCTGGATTCAATTTGCCAGT
chr1:169767323-169767341
GCATCTCTAATCCCAGCTCCTTGAGAGGCT169767323GGTATGGGAGGATCACTTTAGCCCAGGAGCTTGAGGCTGCAGTGAGGTG
chr1:170742157-170742175
GTGGAAATGCCATTAATAGAGACATGTAAT170742157GCTATTGGAGGAGTAGGTTTAGGGAGCCCAGCAAAGAAAACCAAGATTT
chr1:175360786-175360804
ATAAGAATGACACCACCCTATGAGGATTTG175360786GCAAATGGAGGATCAATTTTTAAGAACATTTCTTTGGCCACTCCTGAGT
chr1:186368133-186368151
ATTGAACACAGTTGCTGATCGTTGTGAAAT186368133GCTATTTGAGGATCTGCTTTTGAATGAAATTCCAGAAAAAAAAGTTATG
chr1:195046647-195046665
ATTCAGGTAAAAAAATACAATCTGAATATA195046647GCTATTGAAGGATCAATTAATAAAGAATGGGCTGTATCAAGGGTGCATT
chr1:211511175-211511193
GGTGGTACCATTTCACTGAGATGGAGGAAG211511175GCTATGGGAGGAGCAGGTTGGGTGGGGATTTGATGTGTTAAGTTTGTGA
chr1:216980745-216980763
ATCAAGAGTCTGAGAAAAACATATCACATT216980745GCTATTTTTGGATCAGTTTAATTTACAAACTAGACTTTCTGTTCTAACT
chr1:239998330-239998348
AGGCGAATTAGTTCATTTTCATTACTTGGA239998330GATTTTAGAGGATCAGTTTACTGAAGATTCAGGTAATGGGGCTGTAAGT
chr1:240664049-240664067
CTGAATATTAAAGCACAGTTTATTCATTCA240664049GCTTATGGAGGAACAGTTTTTTTGCTTCCAGTTTTTCACTATTGCCAAT
chr1:242357116-242357134
GAGTCATAATGGCCCCTGTTTCCTTCAAGG242357116GCTATGGGAGGATCAGATAAATTAATGCAAAAGTAAATGTTTTATAAAC
chr1:248532121-248532139
GTATCTATAGTCCAAGCTACTTGTGAGGCT248532121GATATGGGAGGATCAGTTGAGCCCAGAAGGTTGAGGGTGTAGTGAGCCA
chr2:5255731-5255749
CATGGTATCTGTAATACGTTATAGTCCACA5255731GCTATTTGAGTATCAGTTTGTTCAGGCTGCTATAACAAAATAACATAGA
chr2:6501602-6501620
CCTCCAGGAAACAGAGAATTCTCAGCCACA6501602GCTATTGGAGAAGCACTTTTTAAATGTTATTTTCTGCATGAAGGTATAA
chr2:12799793-12799811
ATTGTCTACTCCTTCAAATGCCTGAACTTG12799793GCTATTGGAGGATCACTCTCATGCCCTACAATAGTATCTCTTATGACCT
chr2:26394006-26394024
TGCCGTGTGACCTTAGAGCAAAGCATTTCT26394006GCTCTTGGAGTCTCAGTTTTTTCCTCTGCAGCAGTTGAGGATTGAACCA
chr2:29120034-29120052
GTAGAGACATTCCCTACTTTGAGGGTGTGT29120034CCTCTTGGAGCATCAGTTTGACTTATAAACTAAGGAGAGACAGTTTTCT
chr2:44861022-44861040
AATTTATTTTTTGTTTTGGTAGTCAGTTAA44861022GCTACTTGTGGATCAGTTTGATTCTTTCAACACTTATTTTTGGTTTTGG
chr2:50241384-50241402
TTTCTTTATCAAGAGTAACCATTCGAAAAT50241384GCTATTTGAGGATTAGTTACCAATGCAACTAAACTTCATAATGAATGAT
chr2:59885838-59885856
CACTCTAACTTCACTGTAGTTAGTGAGTCT59885838ATTATTGGAGAATCAGTTTTCTGTTTACACAGATCTCCAATCGGCTTGT
chr2:64141649-64141667
ATGCAAAATTTAAAGAGGCTCTTACTCTGT64141649GCAATTGCAGGATCAGCTTGCACAACACTGAGAATGAGTGGCTCCTTAA
chr2:75975900-75975918
ATTCTCTAACCATATTAATCACCCTGGCTT75975900CTTATGGGAGGATCAGTTTCAGGGGTTGTACAGGGCCTAGAAGTGTTAG
chr2:81531317-81531335
TTTCAGTGTTGGAGTTGCTGAGTTATGTTC81531317TCAATTGGAGGCTCAGTTTGGAAAGCATTCACTTAAACTCACTCAGGTT
chr2:96318447-96318465
GACACCCTGGTCCAGTCCACTCTCACTGAG96318447GCTATTGGGGGTTCATTTTTGTGAATAAAGATTGCAGTTCTCAGAGAAT
chr2:98391530-98391548
AAAAAGAAAGTCTGTTCTACAACATTAAAG98391530GCTATATTAGGATCAGTTTAGATTTGAAATCCATTTATCTAAAAATAAA
chr2:103283123-103283141
GATGAATGATGGAGTTTGAATCCTGTTGTA103283123GCATTTGGAGGATCACTTTGAAGGAGGCGGAGGCTGCTCATTGGGTGTG
chr2:105680452-105680470
AGAAAGAAGAACTGGTAGAAAGCAAAATAA105680452GTTATTTGAGGAACAGTTTTGGATGTGCTGTTTGGATACATAAAGGGAA
chr2:113763954-113763972
AAGGAGTAAGAGTAGGACAAAAGAGGGTAA113763954TCTATGGGAGGACCAGTTTTTGAATCCATGAAAGACTGACTTTTCTAAT
chr2:114052338-114052356
GACACCCTGGTCCAGTCCGCTCTCACTGAG114052338GCTATTGGGGGTTCATTTTTGTGAATAAAGATTGCAGTTCTCAGAGAAT
chr2:119631171-119631189
TTGGGTCGACTTTTCAAAACAGGAGGGAAG119631171GCTAGGGGAGGATCAGGTTCCTAGGGTGTTTTTGGTTGTATCCTAAAAT
chr2:126677424-126677442
TATTTCCCAACTTCTATTTCACAAGGAATT126677424GATATAGGAGTATCAGTTTCCCAACAAACCCACCAAAATTTCATATTTT
chr2:137309784-137309802
CCAAGAATGCAATTAGTGGGTGGTTGTATG137309784GCTATTGGAGGTTGAGTTTATAAAAATTGCCAAACTATTTTCCATTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCTATTGGAGGATCAGTTT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCTATTGGAGGATCAGTTT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
4.296 | 4.285 | search_plus_done; http://172.18.8.78:28018/match?q=GCTATTGGAGGATCAGTTT&k=3&no_gap=1&offset=0&limit=50
4.308 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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