GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 23:49:23, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6219451-6219469
TCCTCATCCTCATCCTTCTTTTTTCGCTTG6219451GCTTTTTTCTCCTTCTTGTCCTTGAGTTTCTTCTTCTTCTTTTTATTCG
chr1:11588403-11588421
TCCACGCCATCCAGGGGCACCTTTTCTGGG11588403GTTTCATTCCCCATGTTGTAAACACAGCCCTGCATCCATTTATCTGTGG
chr1:12738769-12738787
GGAGGGGGTGCCCCGTATACCCAGAGGGAA12738769GCCTCAGTCTCTTTGTTGTTACTATAAAAGTGTATTATAAAACCTGATC
chr1:16777712-16777730
TGAGAGTCATCCATGGTGTTGCGTGTAGTT16777712TGTTCATTCTCATTGTTGTGGCATGTACCATTGTGAGAATTCACCCGAT
chr1:27297509-27297527
AGTGTGCAAATGCTTATCAAGCCTCTGCTT27297509GCTTCATGCTTCTTGGTGTCCCGTTGCCAAAACAAGTCCTACAGCCAAG
chr1:29792973-29792991
CAATGGGGAGCAGCTGTAAATACCGATGAA29792973GCTTCATTCACCCTGTTGCTCACCTCCTGCTGTGCAGACCAGTTCCAAA
chr1:39773889-39773907
AGCCACCACGCCAGCCTTATTTCTTTAATT39773889ATTTCATTCTCCTTGTTTTTAGTTCTTGCTTTTAAGAATTCCCATTTGT
chr1:43361141-43361159
TTTTGGTTTAAGGTGAGAGATGAGGATCCA43361141GTTTCATTCTCCTACTTGTGGCTAGCCAATTATCCTGGTGCCATGTGTT
chr1:46793203-46793221
GGGGTTCCAATGTCCACTCGTATAGGAGGG46793203GCTGCATTCTCCTTTTTGGAGCTAAACAGGATCTTTTTCATCCTTTTTC
chr1:53949099-53949117
TTCTTTGAAGCATGGGGGCTACACAGCGCA53949099GGTTCATCCTCCTTGTTTTCAGAAGGGGAAACCAAGGCCTGGGGAGGTG
chr1:56192609-56192627
CTCTGGAAACAACGGCTCCTTCCTCCATCT56192609CCCTCATTCTCCTTGTGGTAGTGGCCTTCTACCATGGTTAATGTTGGAG
chr1:56730944-56730962
GCATTCTTTGCCTTAACAGGTTGCCTTAAT56730944GCTTCATTCTTCTTTTTGGCTAATATATTTCTTGGCTACCCTGGACAGT
chr1:60317080-60317098
CTAGCACCTTTTAAACATGTATTCCTAAGT60317080GTTTCATTCTTTTTGTTGTTATTTTAAATAAAATTATCAATATCATTTT
chr1:60828766-60828784
TCAAAGGTCTCAGATTCTAAGGACACTGTT60828766GCTGCATTCTCCTTTATGTTTCTTTGAATAAGAGCTCCCATTCCTGTGA
chr1:62831559-62831577
TCATTAAGTGGAAGTGGATCATCATAAAGG62831559GCTTCATCCTCCTTGTCTTCATGTTGAGGAAGCAGAGGAGGAGGAAGAG
chr1:68531464-68531482
TGCCTACAGAATTAAAGTTCAAACTCTTTA68531464GCTTCATACTCCTTGTTCCCTGCAAACCAACTTTAAATTCCCTTTCGAA
chr1:71480065-71480083
TCCTCATCCTCTGCAATGCCTTTTGCTCTT71480065GCTTCACTCTCATTCTTGTTCAGATCTTCCTCTCATTTGAATTATGGTA
chr1:71516956-71516974
CCCATGGGGCATGCTGCTCTTGGTATCTCT71516956GCTTCATTCTCATGGTTTTCCATGCTCTTTTAGCTTGGCTTCCTAGAGA
chr1:73341246-73341264
TTAATGACTTTATAGATAAAGTGTAAGGGA73341246GCTTCTTGCTCCTTTTTGTCTTTTCCCCTTCCATCCCTTCTGCCACGCG
chr1:76160163-76160181
CTAGCATTTATCACTATTTTTAAAAAACAT76160163GCCTATTTCTCCTTGTTGTTACATGTAAATCCTATTGGAATGGTAACTC
chr1:76745806-76745824
CCTTTTCTCTCTTGCTTCTTTCTCTGCTTC76745806ACTTCATTCTCCCTGTTCTGTCCTCTCTTCCAGTCGCCCTTTTTTCCAA
chr1:79343375-79343393
AGTTTCTCAGGCTCTTGGTATTCAGTGGAA79343375CCTTCATACTCCTTATTGTCCTCAATCTTCAGGAAAGGTAGAACGGACT
chr1:82281796-82281814
TGAAAATCTTGTAGATTACATACACTAATG82281796GCCTCATTCTCCTTATTGCTTGTTAATTCTGTGAAAATCAAGAGGAGCA
chr1:83433244-83433262
TAAAGTTTTTACTTATGGTATATTTCCCTG83433244GCTTAATTCTCCTTTCTGTCTCCATGGATCACGGTGTTTGACAGAATTG
chr1:87506777-87506795
TGGACAGTTTTTACATCAGTGTTTTATTTA87506777GCATCATTCTGATTGTTGTTTACTTTTTAAAGGGGAGAAGGAGAAAAGG
chr1:88012486-88012504
ACCTCCAATGTTCATTCTAGGCCCAAGGGC88012486TCTTCATTCAGCTTGTTGTGAATGCTGCCAGGCCTGGGACTCTCCCTTC
chr1:88339234-88339252
CCGATTCACTCATTTAATTTTTCTAGTAAG88339234GATTCATTCACCTTCTTGTCCTCTAAAACACTGAGCTTTCTTTTTAAGT
chr1:90760561-90760579
GGTGGCTCTAATGCATTAACCACATCAATT90760561GCTTCCTGCTCCTTGTTGTCACCAAGGTGGGCCACACTCACCTAAAAAT
chr1:91921815-91921833
ACAGCATATGTGCTCTCTGGTTTGTCACAG91921815TCTTCACTCTCCATGTTGTAATCTACCCAGCCTGCTTCGCTCATTGGCT
chr1:92474100-92474118
TAATCAAGTAAAGTCTATAGTTTACATTAG92474100GATTCATTCTTCGTGTTGTACTTTTTATGGATTTTGACAAATGTGTAAT
chr1:95593834-95593852
GGAGAGATGGAGAAGGCCTTTTTCTTTTTG95593834GCTTCATTCTGCTTGTTAAGCATTATAAAAACAAACCCCAAGTAAAGGA
chr1:102644934-102644952
TTGTTATCCAAAGACCATAATTTCCATTAA102644934GGTTCATTCTCGGTGTTGTACATTTTATGGGTTTGAACAAATGTATAGT
chr1:102689322-102689340
GGATGACTTGGCATAATTTGCATTTTAAAA102689322GCATCATTCTGCTTGCTGTGTTGAAGAACGACACATATTTTGAGGAGTT
chr1:106739541-106739559
CTCAAAGGATAAATGCTTGAGGAGATGGAG106739541ACTTCATTCTCCATGATGTGATTATTTTAGATTACATGCCTATGCCAAA
chr1:108864866-108864884
CTTTTCTTTGTTGGGAAGTTTTTGATTACT108864866GATTCAATCTCCTTTTTGTTATTGGTATGTTCAGGCTTTCTATTTCTTC
chr1:109288211-109288229
CATCCTTGGCAAGTTACTTGACTTCATTAA109288211GCCTCAGTTTCCTTGTTGTAAGTGTTGCTTTGAGGATCAGTGAGGTAAT
chr1:111764327-111764345
TGTCTTCTACAGCATGAATCCCTGTGAGCA111764327GCTTCATTCTCATTGCTGGCTCCTGCTTATCTCCTCTTTCTTCTCCTCC
chr1:118243407-118243425
TCCAGATCACACCCATCAGTATTGTCAGTA118243407TCTTCATTCTCCATGGTGTTTGACTCTTGATAAACCTCCTTCTATTTTT
chr1:119890444-119890462
TGCCATAAAACCTATGGAGTGCTCAAAAGG119890444GGGTCATTCTCCTTGTTTTCTCCTCATTCTTAGATTGTTTCCTGCCTTT
chr1:143374511-143374529
TTTCCAGAATTCTGCACTAGGAACTCAGCA143374511GTTTCATTCTGCTTCTTGTGTTGTGGCAAACAAACATTGGTTCCCATAG
chr1:154274807-154274825
TGCTGGGATTACAGGCGCGAGCCACCGCAT154274807GATTCATTCTTCTTTTTGTTGTTGTTGTTTTTTGCTTTTTGAGACAGCG
chr1:159858149-159858167
GAAGGCTTAGGGAGGTTAACTACCATGGTG159858149GCTTCCTTCTCCTTCTTGAAGGCCTGGTCCCTGGCCTCAAGTTCTTCTC
chr1:162971257-162971275
TTTCCTCTTGGCCCTGCTTTCTTTTCATTT162971257TATTCCTTCTCCTTGTTGTGATGTCATTGCCTCAGCCATAACCATGCAC
chr1:163112291-163112309
TACAAATGGATTTATAAACCTTTCACTTCT163112291ACTTCATTCTCCTGGCTGTGTCTTCCGAAGATGAGTTGCTAGTTGCAAC
chr1:164233516-164233534
TCATTAAGTGAAACTGAATCATCATAAAGG164233516GCTTCATCCTCGTTGTTTTTAAGTTGAGTGAGATGATGAAGAAGAAGAG
chr1:171268530-171268548
TCCCTTGGATCTGCCCTTCTCCCTAGGCCA171268530GCTTCATTCTCAGTGTAGTAAGTGGATAGTACCAAAATTTCAGGCTACA
chr1:171466053-171466071
CTCAACCTCCCAGGCTCAAGCGATCCTCCT171466053GCTTCAATCTCCTGGTTGGGACCACACGCATGTGCCACCACACCTGGCT
chr1:173716057-173716075
TAATATATTTAATTGATTCTAGTCTTTAGT173716057GCTTCATTATCATTGTTTTATAGAAATTCTGTTTATATTTCTGTAACTC
chr1:177436048-177436066
GTATATAAAATGGTCAATTATATGGTAACT177436048GCTTCATTCTCTTTATTTTACTTCCCGAGCCTCTTCCTGCTAATTTTAC
chr1:179859410-179859428
TAGTAAAGACACTCCAAGCAGTCTACTTTT179859410ACTTCATTTTCCTTGTTTTTTTGGCTCTTAAAGATGCTTTATCATGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GCTTCATTCTCCTTGTTGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GCTTCATTCTCCTTGTTGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.170 | 7.160 | search_plus_done; http://172.18.8.78:28018/match?q=GCTTCATTCTCCTTGTTGT&k=3&no_gap=1&offset=0&limit=50
7.183 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).