GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-08 08:39:30, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:51008382-51008400
GAAGCAAGGGCAAACCACTCTACAACAAAG51008382GGAAATGGCTCTGTTTTTAAATAATACAATTTCTGAATAAATTGAACAG
chr1:52548629-52548647
TCCCCTAAGTAAGATGCTACCCTGCCAAGT52548629GGAAATTGCACTGATTTTGTTTGACAGTATAAATTGAGTAAGATAATGA
chr1:63399221-63399239
ATGAATATATGAATGAATAAGACCAGAAAG63399221GGAAATAGCAGTGTTGTTGTGTATCCATAACAGACAAGAGGAATATCCC
chr1:63664973-63664991
AGTACTTTTTACATATAAAAAGCATGTTTG63664973GCAAATTCCGCTGTTTTTGCTGCTAAGTTATACAACGTTGTAACAGACA
chr1:67991140-67991158
ATTACCAAAGAAAGGAGAGCACAGATACTA67991140GGAAATATAGCTGTCTTTGTCATGTGCATTATGAGCCAGGCACTGTGCT
chr1:77401334-77401352
TTGGTTAATTCCTTTTTTTCCTCATAAAGG77401334GGAAATTGCCCAGTTTTTGAATAATTGAACTGCAAAGTTAGCACAAAAA
chr1:83187271-83187289
GATGGAGGCTGGCCAGGGTGCTAAGCAATT83187271GGAAAGAGCCCTGTTTTTCATTTTTTTAAATTAAAACTGTCACTTTCCT
chr1:86246230-86246248
TTTCCTCTCCAGACACAGCTTGAATGGAGT86246230GGAAAGAGCGCTGGTCTTGAAGAAACACCAGCTATGTAATCCACGAGGT
chr1:103529578-103529596
ACAACAATGAGAAACCACAACATACCAAAA103529578GAAAATAGGGCTGTTTTGGGGCAAATTCAAAACAGTGATGACAAAAACT
chr1:116488455-116488473
GACTCCTCCACAAAAGAAAGACAGGCTGGT116488455GGAAATAGAGCTTTCTTTGAAAAGAAATGAACTGTGCTTCTTGCTATAG
chr1:116544076-116544094
CCTGATGTCTTTCTCTTCTTCCTCTTTAAG116544076GGAAATAACTCTGTATTTGCTCTTTTGAAACTGTTTTCTAGATCCTGTA
chr1:118557435-118557453
TATAAGATGTTAAAGGAATAGCTAAGGAAT118557435GGAAAGAGCTCAGTTTTTGGTCACAAACAACTGGCTCTAATCCTGGCTT
chr1:148656387-148656405
AAAAGTAATGTTAACAAAGTAAAGAGAATT148656387GGAAATAGTAGTGTTTTTGACCACTAGTGTTTTGTAATTTTGGAAAAAA
chr1:148818304-148818322
AAAAGTAATGTTAACAAAGTAAAGAGAATT148818304GGAAATAGTAGTGTTTTTGACCACTAGTGTTTTGTAATTTTGGAAAAAA
chr1:149565500-149565518
AAAAGTAATGTTAACAAAGGAAAGAGAATT149565500GGAAATAGTAGTGTTTTTGACCACTAGTGTTTTGTAATTTTAGAAAAAA
chr1:193557451-193557469
ACACACACACACACACACACACACACTGTT193557451TGAAATAGTGCTGTTTCTGCATAAGGAAAGCTGTAGAGGCAGCCAAGCC
chr1:228494366-228494384
ACAGGTGGGCTCCCAGGCTAGCGTGGCCCA228494366GGATATAGCGCAGTTCTTGTGCTTTGGGCGGACCCTCGGGGCTGCCTTC
chr1:242421463-242421481
ACCGATTTGAATAACTTCCTTCCTGTTTCA242421463GGTAATAGAGCAGTTTTTGCTTATATTTTTGGATAGGCACACTTCCTAT
chr2:3506211-3506229
TTCATAGCCACACAGAAAGAAAAGACAAAC3506211GGAAATAGCTCTTTTTTTTTTTTTTTTTTTGAGACGGAATTTCACTCTT
chr2:11870761-11870779
TAGAAATGAACATCATTTTTTCTTCCCTCT11870761GGAAATGGTGCTGTTTCTGCTTTTTCTACGGGTAGGCTTTTGCTGTTGG
chr2:24900270-24900288
AAACAAACCTGAGACTGGGTAATTTATAAA24900270GGAAAGAGGGATGTTTTTGTTTGGTTGGTTGGTTTTGTTTTTTGAGAGA
chr2:31032407-31032425
TTTAGTGCTCAGTGTCCTAAAGAAATGCAA31032407AGAAATAGCTCTTTTTTTGCAATCACTTCGAGCCAGAAGAAAACTGGAG
chr2:56682628-56682646
TTTCAAGAAGCAGCACTAATATTTATAAAG56682628AGAAATTGCTCTGTTTTTGAAGAGATAAAATTTCAGGGGATGAAGATGA
chr2:56713101-56713119
CCCAGGGGATTCCATTCTCCCATGAGAGAG56713101AGAATTAGCTCTGTTTTTGAGAGCATAAGCCCTGGACTTAATCTACCTG
chr2:100443630-100443648
GGTGGCCGCTGGGCAGGTGACAGAAGTTCA100443630GGAAACAGAGCTGTGTTTGAGACACACTTGAGACCCATCCCCACACAGA
chr2:106069238-106069256
ACCCTGACTCCAAAAAAAAAAAAAAAAAGA106069238TGAAATAGCGCTGTATTTATTGACTTATTATACAGTGAGTTTAAAAAGC
chr2:115171430-115171448
ATCTCCTGGTCGGCCGGTTGCTAATACCGT115171430GGGAATAGCGCAGTATTTGGTCAGGAGTGAACTGTTTCTGCAGATACAG
chr2:123772956-123772974
TCTCTAGCAATGTCAAGCATTTCTTTAAAA123772956GGAAACAGCGGTGTTTTTGAAATAAAGAGAGATAAGAATAAAAACTATT
chr2:125981693-125981711
AGCTGTCCTGGGGTTTTGTCTGCCAGGAGT125981693GGATATAGGGCTGTTTTTCAGGCCTGTGACACAGCTATACTACTGCTCA
chr2:126142017-126142035
AAAGAAATAAGAGACATAGATTTGGAAGAA126142017GGAAATAACTCTGTTCTTGTTGACAGATATAACATGATTATATATGTAG
chr2:140025705-140025723
ATAAGTCCATATAATGAATTATAAGGAAAA140025705GGAAATAGAGCTGATTTTTATCCACAGAAACAAATGTTGAATGAATAGC
chr2:140205614-140205632
CAATTTCTGCATATTAACTGGCATATTCAA140205614GGCAAGAGCACTGTTTTTGCCACTAATGAGTAAAGACCACAATAAGATC
chr2:148992621-148992639
CAAAATCCAGGAATGTTCAAGTCCCTTATA148992621TGAAATAGTGCAGTTTTTGCATATAACTCACACCTATGCTCCTTATACT
chr2:193920040-193920058
TTTTTTAAAAATGAGTAAATAAATGGATGA193920040GGAAATAGCTCTGTTGTTTTATTACCTTGGAATCAGGGACTATAAAGAG
chr2:199050313-199050331
GAAGACAAGAATATCCAGAGGTAGAAAAGG199050313GGAAATATTCCTGTTTTTGCTTTTTTTGATTTTTAAGAATAATGAAAAC
chr2:201395736-201395754
GTGGGAACAAAAGAGGGTTCTTTAAGGTGA201395736GGAAATAGCAGTGTGTTTGTATATTGATGAGAATGGTCCAGTGGAAAAG
chr2:208222871-208222889
GGTACATTTTCCTGGAGTGCCAATAGAAGA208222871GGAAATGGCACTATTTTTGGAGCATTACAAACTAGAGTAAAACGCAAAC
chr2:224265119-224265137
TTCAGTCAAAGGAGAGGCCAAAATAACTGA224265119GGGAATAGCTCTGTTTTTCAGTGTGTGTTTAGATGTAGCTATTCAGAAG
chr2:227834133-227834151
GCTCAGCCTTTTTTTTTTTTTTTTTTTTAA227834133GGAAGTAGACCTGTTTTTGATGCTTGAGATATTAGGGGTGAAGGAGAGT
chr2:232650393-232650411
GTCTCATTTCTGCATTCTAACGCACGATAG232650393GCAAATAGGGCTGTTTTTCTCTCTCATTTTCAAGACCTGAAAGACTGTG
chr2:235213229-235213247
ACAGATGCTTGCCATTCAGTTACAGACTGG235213229GGAAATAGCTCAGTATTTGGGATTGAAACTGTAAAGACTGGATAGGTTT
chr2:236653892-236653910
TCTATTAAAGCTTATCTTTCAGTGCACCTT236653892GAAAATAGTGCTGATTTTGAACATAGAGCAGTTCTGTTTATTAAGTTCT
chr3:31585841-31585859
TGCTTGTCTTCATTAAAGTGTCTTTGCAAT31585841GGAAATAGCTTTGTTCTTGTCTAATTACTGGAGAGGATCATTGAATATT
chr3:62327272-62327290
CATGCTGCCATTAGCAACACCAATAACCTG62327272AGAAATGGTGCTGTTTTTGCAATTAGGTGATTGCTTGCTCATCTCACAG
chr3:64274620-64274638
GGTAATGGCTTCATTTCTTTATTCTTTCAA64274620GGAAATAGGGTTGTATTTGTTACCCATAACAACATTGACAGGTTCAACT
chr3:79630257-79630275
ATAGTTGAATGAAGTAATGACAGTGTCTCT79630257GGAAATAGTTTTGTTTTTGTTTTTGTCTTGTTTTATTTATTTTATTTTT
chr3:83393392-83393410
AATGATCATGGCTAAAGACACAATTGACAA83393392GGAAATATGGCTGTTTATGTGGCATAATTAGCCATAATTATGACTTATA
chr3:93923618-93923636
TTAAAAATAAGTAAATAAATACATTTACCT93923618GGAAATGGCGCTGTTCTTCCCTGGATTTCACTCTTTCAATCTTTTCCAT
chr3:94588959-94588977
ACATTTCGTGACTTTGATTTCTCTTCAAAG94588959AGACATAGAGCTGTTTTTGGAGCTAGTGGTTTTCAGAGCTGGAGCAAGT
chr3:101747361-101747379
AAAAATCATTTAAAATAGCTTCAAAAGTAT101747361GAAAATACCGCTGTATTTGATAAAAGGTGAGCAAGATCTGTTTACTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGAAATAGCGCTGTTTTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGAAATAGCGCTGTTTTTG | format : html | download : | debug : 

0.011 | 0.011 | search_start;
7.913 | 7.902 | search_plus_done; http://172.18.8.78:28018/match?q=GGAAATAGCGCTGTTTTTG&k=3&no_gap=1&offset=0&limit=50
7.925 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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