GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 22:47:59, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3306484-3306502
GCATGAGCGGAAGGCACAGAGGGGCCCTCG3306484GGAATCTCCATGCACTTTTCTGGGGGTGCGCCCCCCCCCCCCCCCCACC
chr1:4759367-4759385
TTTTCCTCTCTTCAAATTCTAGAAACCCAC4759367GGAACAGCCACGTACTTGTTTCCAGAGGCAGAGCCTTTGCTGTTCTCCT
chr1:46038817-46038835
AGACATCTTTGTCTAATCACTGTGGTTGTA46038817GGAAAATCCAGGTTCTTGTCACATGAACAGGAAAGATTAGGCTCGCAGA
chr1:47567203-47567221
TGACCCAATTGTTGTTCAGGAGAATGTTGT47567203TGAATTTCCATGTATTTGTACAGTTTCTAGAGTTCCTCTTATTATTGAT
chr1:48282025-48282043
TCAAATTCCCCATGGCTCCCCTCTGCCCTG48282025GGAATAACCATGAACTTCTTCAACATGGACTCTCAGAAGTACTTGGCAG
chr1:55894158-55894176
GCCTTTTACCCATGCTATCTCTTCAGCCTT55894158GGAATATCCATCTCCTTTTCTGTGCTTATTAAAATCCTACTTATCGTTT
chr1:68165986-68166004
TTATAGAGCCCCAAATAAAAAGGTTTAGAG68165986GGAATATCCATGTGTTTATGTGTAACTGACCCTCGTGCCAGGGAAAAAC
chr1:73950627-73950645
ACTAAATACTAATCAAAGCATAATAATTGA73950627GGAATATCAATGCATTTGTTTATCGAACTATTCTTACAATGGAAACAAG
chr1:77065338-77065356
TTTAATTCAATCTAGATGGATGAAATACCT77065338GGAATATCCAAGTAATTCTAGTAAAATTCGTTGTTTGATTATTTTATTC
chr1:79232808-79232826
AAGGGGTGAGTGAATATAACACCTTTAACT79232808GAAATATTCATGTACTTGTGTTGGGAATAATCAGGAAAACAACTCGACC
chr1:80915107-80915125
CAACTCTAAAACAAGCCTAAAGCAAATACT80915107GGAATAATTATGTACTTGTTAAAAGAAATGAACTGTTATTAAACTACTG
chr1:87228477-87228495
CAAAGAACGGGGGGTAACTTTGGAACATCA87228477GGAATATCAATGTGCTGGTCCAACTAAAGAGAGTGAGCCAGCCCGTCGG
chr1:88451209-88451227
GGAGGTCAGTATGTCAATCTTATTTGCCCT88451209GAAATATCCCTGAACTTGTGGAAATTCATATTTGTTTATGTTATAAATG
chr1:109545956-109545974
TGCATCATATTTTAAAGCTCTGTTGTTTGG109545956TGCATATCCATGTACTTTTAATAGTAATTTTTCTACTTCATTCTTTTTT
chr1:157351477-157351495
TATTTTTAAGAAGCTTAGGGAATGATGGGA157351477GGCATATGCATGTACTTGGTTCATGAATATCTTGAACAAGAAGTCCAAA
chr1:162987986-162988004
TGATTCATTTGTTGTTCAGGAGCATGCTGT162987986TTAATTTCCATGTACTTGTGAATTTTCCAAAATTCCTCCTGTTATTATT
chr1:163842057-163842075
AGACGAAGGTGAACAAAACAAACTTTTGTA163842057GGCATTTTCATGTACTTGTAACTCAATTTCATATTCGACACAATTTTAT
chr1:167752740-167752758
TTGGGTTATGTTGTTAAACAGTGATTGAAT167752740GGAATATTTATGTATTTGTCAACTATAGTGCATAGCATAGACAGGGTAA
chr1:169353253-169353271
TTCTGAGTCTGAGAGATTTATATCCAGCCA169353253GGTATTTCCATCTACTTGTTCCACAGATGGCTAAAAATATAATCTCTTT
chr1:178205464-178205482
CTATGATGGTCCTCGTAGAGGTATGATACT178205464GTAATAACCATGTACCTGTCTCTCAGCTTTAGAATTTGCAGTTACACTT
chr1:188614437-188614455
TCTATTTAAGTCCTTGGACCATTTTAAGTT188614437GGATTATCCATGTTCTTGCTCTGGAATTCCTTATATGTCTTCATATTAT
chr1:189014614-189014632
ATTTTAATCTAATCTGACAAATTATAAAGC189014614TGAATATTCATGTACTGGTAAGATTATAAGGAGAAATGACAATTGTGGT
chr1:194657866-194657884
ATATACTATATCTTGACTGATTTGTTGATT194657866GTAATATGTATGTACTTGTTTAAACTCAGAATTATACACTTAAAATTTG
chr1:195276578-195276596
TCTCTGAGGCCGATAATGTGAACTAACAAA195276578CAAATATGCATGTACTTGTCACCTCTTAGCTTATAGTTTTCTATAGCTG
chr1:207386799-207386817
TTGCAAAATGTTTTGGTTTTCTAGGTCTTC207386799GGCATATCCATGTACATTTTAGAAATAGCTTGTCAATTTCTATATAAAT
chr1:219258007-219258025
CTGCTTTCACAGCACTCATTAGCATCTGAC219258007ATAATATCCATATACTTGTTTATTTATTTTTCAGCCTCCCCCGTTTGTC
chr1:221917149-221917167
TCCAAGCCTAGTAGTATACTGAGTAGCAGG221917149GGCATATTCATGTAATTGTTTTCAGGGCAGATCTGAAATCAGGAGGTGT
chr1:222443735-222443753
ATTGGAAGACAAGGTAATCATATGTTCTCA222443735AGAAAATCCATGCACTTGTTAATGGCCCTAAATGTTGAACAAATTAGCA
chr1:231262566-231262584
AAAAAGAAAGGAATGGAGTGGAAGGATGCA231262566GGAATATCCATGTACAAGAAATTGGACTTCCCATGGGACTGGAACCAGG
chr1:232222828-232222846
TACCCTCAGAAATGAAGAACCAAAGGAATG232222828GGAAGATCCATGTATTTTTATGGACAGTGGTGCAGAAGTATGACTGGAG
chr1:242792460-242792478
ATTTTCATTTTTGGCTATTATGAATGATGA242792460TGAATATTCATGTACATGTCTTTTTGTGAACATGTATCTTCACTTCTCT
chr1:243468814-243468832
TGTATACATGATGAATTTGAGTATATATGA243468814TGAATATTCATGTACTTTTTATAGAATCTATTTATTAGAGATCCCAGTA
chr1:245708299-245708317
CTGGAGGCCATGGTGATGGAAGAAATGGAG245708299GTAATTTCCATGTACTTGGAGTTGAGGCATGCACACGCACATGCGCGCA
chr2:105531-105549
TGACCCAATAGCCGTTCAGGAACATGTTGT105531TGAATTTCCATGTATTTGTATAGTTTCCAAAGGTCCTCTTGGTATTTAT
chr2:8011666-8011684
ACAGAAGATACATCAGTGAACAGATGAGAG8011666GGAAAATCCATGTCCTTATGGGTTGTAGTTGATGAAAAACTTTGCTTTT
chr2:8224345-8224363
TCACCATAACAATCCCATAGTGTGCACCTT8224345GAAATATCCATGTAGTTGGTGAGGAACCAAGGTTCAGAGAGAACATGCA
chr2:12052206-12052224
CTGCTTATACAGATCAAGTAAGAATTTAGT12052206GGAATATCCACGTATTTCTCTTCTAAGGACACAATGATCAATTAACCAA
chr2:13344034-13344052
TCCTCTACTCTCAGGGTACATTTTGTATAT13344034TAAATATCCATGTACGTGTGCTGTCTTTCTCACATAGTGGGCTCATTAT
chr2:17899450-17899468
GTCTCTTCACTAATCTTTTCTAGTTTGTCT17899450TGAATATCCTTGTACTTTTGTTCTGCCTCATTAAGTCTGACCTTTAAGA
chr2:22935353-22935371
TTTATCCAAAATCATTGAGGAACAAGTTGT22935353GCAGTGTCCATGTACTTGTGTGTGTTTTTTAGAGTTTCTCTTGGTATTG
chr2:25326016-25326034
TTTTCTTGTAGGATTTATTTTCTCTTTAAA25326016GGAATATCTATGTATTTATCTCAGCTCATTAAGTTGAATGACTGCCTTC
chr2:37469335-37469353
TTACTTGCCTAAAGACAAGCAAGGTGTGGG37469335GGAAAATCCCTGTACTAGTCAGGAATACTGACTAGTATTGACTAGTTTG
chr2:45892240-45892258
TTCTGAAAAGATTACTGTACTCTCAGTGAG45892240GAAATATGCATTTACTTGTAATTGTTAAGAGCCTTGATCTTTAAGCTCG
chr2:50172979-50172997
AAGTCTTTGCTATTGTGAATAGTGTGGCAA50172979GAAATATACATGTACATGTGTCTTTATAGTAAAATGATTTATAATCCTT
chr2:50491545-50491563
ATTCCTTCTAAAACAGAAAGCATTTTCAAA50491545GCAATATCCATGTACAGGTAAACGACAAAGCAATCATTTTGAAAGAAGG
chr2:51830383-51830401
TTACCTAGGGGTCATTCGGGATATGGTTGT51830383TCAATTTCCATGTACTTGTGTGATATTGAGTGAGTTTCTTAATATTGAG
chr2:61336040-61336058
TACTATATTGTAATTTAATCTTAATATCAA61336040GGAATATACATTTACTTGAGTGATAGAGGTACAATTCAACAAATACTGA
chr2:65796096-65796114
ATGTCTTTGCTGTTGTGAATAGTGCTGTAA65796096TGAACATACATGTACTTGTGTCTTTATGGTAGAACCATTTATATTCCTT
chr2:66912357-66912375
ATTCTTGTGAAAACCATAATTACAGGGCCT66912357GGAATATAAATGTACTTATAAATATTGAGAATAATTATGGCTATTACAA
chr2:80433552-80433570
CTAAACTGAATATATGACTTGCACATATAG80433552GGAAGATCCTTGTATTTGTAAGATGCTATCACATCACATCCAATGTTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGAATATCCATGTACTTGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGAATATCCATGTACTTGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.103 | 5.093 | search_plus_done; http://172.18.8.78:28018/match?q=GGAATATCCATGTACTTGT&k=3&no_gap=1&offset=0&limit=50
5.114 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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