GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 18:27:02, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:2104960-2104978
AAAAACAAAATGGCTGTAGAAGGAAACACA2104960GGAGAGTATTTCCGTTACTGCAGCGAAAGGGCTTCTTCAAGCTTAGTTC
chr1:55379062-55379080
GCTAGGAGTACTATGTACCTGGGTCAGTTG55379062GGAGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCA
chr1:58818952-58818970
CTAAAACAGCCACTGACATTTTGATCACCA58818952GGAGATAACCACGGTTACTGTTTTGAGTTGATTTCATTCCAGCCAAACA
chr1:79286095-79286113
AATATTTTGAGATCCCATACCCCTGCCATT79286095GGAAATTACTACAGTTACTGCAGAAAGACACCCCTGGGGGATATATAAT
chr1:94313706-94313724
CCCGAATCCCAGCGGGAGCCCGTCAAAAAT94313706GGAGATTTCTGCCGTCACTCTGGGACTCTTAATTCGGTCCGTCTGGGGT
chr1:108595964-108595982
GGAAAAATGCCAAGTAGCAGAGGGAAGCTA108595964GGAGAATGCTGCCGTTACTACCCAGCTGTTTGGTCTGTGGGACCTGGAA
chr1:149568069-149568087
CCAGGAGAATGTTTTCCTTGGCAATCTCTG149568069GGAGATTACAAATGTTACTTTTTTTTTTTTTTTTTTGAGATGGAGTCTC
chr2:80843698-80843716
GAGACCAGCCCTACATCTGTCTGGTCAGAA80843698TGAAATTACTACCGTGACTATAATAATGGAGTCTTGACTACTGAAATCT
chr2:144784269-144784287
CTCTGGGCTTCAGTTTCCTCTTCTACAAAG144784269GGGGATTAATACCATTACTGACATTACTGGGTTGTGGGGAGGATTAAAT
chr2:160542794-160542812
TACTTTAAAAAGAGAGAGAGAGAGAAAATG160542794GCAGATTACTACCTTAACTAAGATATCAAGGTTTACCTCACCAGAGAGA
chr2:196984304-196984322
TATTTTAATCATATACTGAAAAGTCAAGAA196984304GGAGATGACTGCTGTTACTGCTCCAGTGACTTCTGTGGGTCAATAATGT
chr2:199609085-199609103
ACCATGGACTGGCCACTTAATTGTTGTGAA199609085GGAGATTACTGCCATTACTTTATAGATTAAAAAAAACTGAGGTTTAGAA
chr2:221609838-221609856
TGTAATACAAACTGTGTTGGCCTTGGGGCC221609838TGAGATCACAACCGTTACTCACCATGTTTACAAATTATATCATTTAGTC
chr2:239881156-239881174
ATCCAAATAAGCTCAATTAGAAATGAAATG239881156GGAGATTACTACTGATACCACAGAAATACAAAAGATTATTTAATGAATA
chr3:46481944-46481962
AAAATTAAATTTGACATCAATCTGATCCCT46481944GGAGATTACTTCAGTTAATGGCTTGTAAATTCTAAATGTAATTGTATGC
chr3:49230452-49230470
CAATAAGAAAATTGGGCTATAGTCACACAA49230452TGAAATTACTAGCGTTACTATAAATGGGCTACAGATATTAGAATCCACA
chr3:55262426-55262444
ACAGGCAGGGGACACACAGCCACTCCAAGA55262426GGTGAGTACTACCCTTACTCCCACTTTACAGATGAGGACAATGAGGTTA
chr3:96387273-96387291
TCTAGGGGTGCTATGTACCAGGGTCAGTTG96387273GGAGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCA
chr3:168465277-168465295
TTGTATCACTGAAATTTCACAGCGACCATA168465277GGAGATTGATACTGTTACTGTCCCTAATTTATAAAAAGGGAAATGGAAC
chr4:11616405-11616423
CTAAACTTCTCTGGATACAATGCCCATAAA11616405GGAGGTTTCTACCATTACTTTTTTACTTCTCTACTTCTCTATTATTTTC
chr4:18189458-18189476
GGGGGCTGCTTGACTGTTTTCCATTCTCCT18189458GGAGATTATCACCGTTATTTGCTAAACTCCTGGACAGACTCTCATTTCT
chr4:41002460-41002478
ACCAAGGGCTATATGTGACAATCTTATAAA41002460GCAGATTACTACTATTACTATTCTCATTTTAGAGATTAAGGAACCTGGA
chr4:85450873-85450891
GTTGTTTAATGTGATCCTTGTATTACTTTA85450873GGATATTAATACCATTACTAATTTCATGTTACAGATAAAGAAACTAAGT
chr4:94901086-94901104
TTTCCTTAAGTTGACTCACCATGGCACCCT94901086AGAGATTAGTACTGTTACTGATTTCACAGGTCTCTTGTGCATGTGAATT
chr4:106513599-106513617
CTTCTGATGGCACCGAGACCTCCAAACTAT106513599GGACATTACTACCATTTCTCTCTTCATCGGGCCCAAAGATGCTTTAATT
chr4:127213628-127213646
ACTCGAGCTTTTGCTAACTATAATAAAAAT127213628GCAGATTGCTACCGTAACTATAAGGGAACATTTTTAGGTTCAAGATCCT
chr4:139544971-139544989
GCTAAGGGTGCTATGCACCCAGGTCAGTTG139544971GGAGATTACTTCCTTTACATGTTTTTCTCTTGCCTGATCTTGAACCCCA
chr4:151525928-151525946
ACATTACTATATGCCACAGCCCAAGTGCTA151525928GGAGAATACTACCTTTACCCACACATCCCCCAGTTCCCCTGCCCCACAA
chr4:178474564-178474582
GGACACACTTTCACTGGTGTTTCTGTGATT178474564TGAGATTACTTCTGTTACTGCCTTTAGATTTTGTTTCCCAAGGGGGTTG
chr4:186691791-186691809
TAAATAATCCTCTTTGCTCTACTGCAAAGG186691791GGAGACTACTGCTGTTACTGTTTTGTGTCATCATGTCCTGATCAGACAA
chr4:186737184-186737202
AAAGAAGTTAATAAGTTATGGAGTAACTAA186737184AGTGATTACTACCATTACTGTTACTCTGAGGAGGCTACTCTGGTAGAGA
chr5:49943159-49943177
CCAGGAGAATGCTTTCCTTGGCAATCTTTG49943159GGAGATTACAAATGTTACTTTTTTGTTGTTGTTGTTGTTTTGTTTTTTA
chr5:56817452-56817470
GCTAGGGGTGCTATGTACCCGGGTCAGTTG56817452GGAGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCA
chr5:60058847-60058865
AACACAGAAAGTAAGGATAAGTAAAATAAT60058847GGAGATTAATACAGTTACTGTTGATTTGACAAATGGACACCACTGAGAC
chr5:76915786-76915804
GATGTTTAAAGAGGGGACACTAAGGGAAGA76915786GGAAATTACTACTGGTACTTTTTTTCCTATCTTATTGTGAAATATGTCC
chr5:86822123-86822141
ATTGATTAGAGCAGCAGCCTTACGGTAAAG86822123GGAGATTCCTAGCTTTACTTCCCTTCTCCTAAGGAAGGAGGATATGAAG
chr5:104560263-104560281
GAATGCAATATGTATGGCCGGGCCATTTTT104560263GGAGACTAATACCGTTACTAACCTCCTCCTCTTGCTAATGGAATGTATT
chr5:107911870-107911888
GCTAGGGGTGCTATGTACCTGGGTCAGTTG107911870GGAGATTACTTCCTTTACATGTTTTTCTCTTGCCTGATCTTGAACTCCA
chr5:174238149-174238167
TCATGGCTTTTCTGGTTATTCTTAGAGGCT174238149AGAGAATACTACTGTTACTTTAAATCAGAGAAGAGAGTCCTAGTGCAAA
chr6:42710643-42710661
TTCAGAAATTGGAGATGGGGAGATGAGTTA42710643GGAGATGATTACCATTACTAGTAGAGGAAGGTAATATTTTGTAACCATC
chr6:92556178-92556196
AAATAATTTATTACTTTTGACAGATCTAAA92556178GGAGAGTACTACAGTTACCTAAATTATATATCGGAAAAGGAAAGCATAG
chr6:127677265-127677283
GAGAGCAAAGTCTTCTATTTGAAAATGAAA127677265GGAGATTACTACCGTTACTTGGCTGAGGTCGTTGCTGGTGATGACAAGA
chr8:36220462-36220480
GGCATGCATGAGCTTCTACTTAGGGTCCTG36220462GGAGATTACTACCCTGAGTTCAGTTTATATGACAATTTACTGTCCTGGG
chr8:54264326-54264344
CACAGACAGAAAAGTCTGGTGGTGCTAGAC54264326GGAGATTACTAACTTTATTTAGATATCGACTATCTATCTTTTAATTGGC
chr8:66383176-66383194
ATTATTTGAAGGCAGTTGCTAGCTAGAGAT66383176GGAGATTAATACCATCACTAAATTCCACCCATAACTTCAGTTCCTAATT
chr8:67303499-67303517
TCTCTCCCAGTTCACAATCTAGGCCAAATG67303499GGAGATGACTACGGTTATTGAAAGTATTAGATCTTGGTTCAAACAGCTC
chr8:72804156-72804174
TTTCTGTTGAGAAATCTGCTATTATCTGAC72804156GGAGATTCCTTCTGTTACTCATTTTAGAATTATATCTTTGTATTTGACT
chr8:75037882-75037900
AGAGTTTTATTTCTTGAACTTTCTTTTGTT75037882GGAGATTAATATTGTTACTTTTGCTTTACTTATGTTAACATTTGCCATG
chr9:31984381-31984399
ATGAATGTTTTGAAGAGTGTATTGGGGGTG31984381GGGGATTACTACTGTTAATCACGCTGCATGTGTGAACAATATGTGTGAA
chr9:84446936-84446954
CTTAATTAAGTTTTCTAGGGATATTAATTT84446936GGCGATTACTTGCGTTACTTAACTAAAGAAAAGCCAAATAAAACTATAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGAGATTACTACCGTTACT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGAGATTACTACCGTTACT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
3.414 | 3.404 | search_plus_done; http://172.18.8.78:28018/match?q=GGAGATTACTACCGTTACT&k=3&no_gap=1&offset=0&limit=50
3.426 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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