GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 15:07:43, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5980421-5980439
GATTATAGGCATGAGCCACTGCGCCCAGCC5980421GGGGTTAGCTGTTTTCACCCATCAAAGACTCTGGGGTCCAGAGGAGCTC
chr1:12015663-12015681
GAAGCACTGAGTTCAGATCCACGCAGGTCA12015663GGAGCTATCTGTTTTCCTTTTTTTTTCTTCTTTTTTAAGATGGAGTCTT
chr1:16293515-16293533
GACAATATGTTTTGTACATAAAATGTATTT16293515GGAGTTTTTTGTTTTCATTAAAGTTGAGGTCCCTCCCTACTGTGATGTC
chr1:20971437-20971455
TCCATTTGACTGTTAACCTTTTCTGTGGCT20971437GGACTTATCTGTTTTTAACATAAAAACCGTTCTCCTTCCTCACCCTCTG
chr1:23316043-23316061
TCAAAACAAAAGCACCACTAACCCCTTTTT23316043GGAGTGTTCTGTTTTCTTCGTGGAGTTTCAAGAGTCATGGGCAGATTCT
chr1:23735581-23735599
CTAACTGGAGTCCACAGAGACTGGATTCCT23735581GGAGTTGTCTGTACTCATCTGGAACCAGAGAAACAGAGAAATCAGCTTC
chr1:25827188-25827206
ACACTTTTATCATCCTCCCTTGTTTTTAGA25827188GGCTTTGTCTGTTTTCATCTTCTGAGAAGCCAACTGCCTCCCTTGGCCA
chr1:28375520-28375538
CACAAATGAAAGATAATGGTTAATACTAAT28375520GGATTTTTCTGTTTTCATATTACAGAGAATCTGATTTTAGAACTCTCTG
chr1:30034642-30034660
TTGCTCACTTAATCCTCACAGCCACCCTAA30034642GGAGGGAGCTGTTTTCATCCCCATTTTACATCAGAGGAAACTGAGGCTC
chr1:30288850-30288868
GATTGGACTTTGGTGGCTTGTGTCTTTCAG30288850GGGGTTTTCTGATTTCATCTAAGTTGTCCAATTTATTGGCATAAAGTTG
chr1:33001337-33001355
AACATCCCCTTTATAAACCAGTTTCTGAGA33001337GGAATTGTCTGTTCTCATCATCTCTATTCCTTCATCCTCCACTTATTCC
chr1:36467273-36467291
TTTTAAAATCATGATAAAATGAGTCATAGA36467273ACAGTTATCTGATTTCATCTAAAAAGTTATTCCTACATTTTTATCTTTG
chr1:38074813-38074831
CCTATTTCTCTTCCTCTTTTTCACAGCTAA38074813GGAATTGTCTGTTTCCATCACCCTCCCCAAACACTGCTGCTAAGCTTCT
chr1:42703247-42703265
GTGAATATGTACTGTATTTTCTCACAATCT42703247GTGGTTATCTGTTTTCATAATGGAACCTTGTAAGGAGCAAAAAGCTTTT
chr1:44643852-44643870
AGATGGGTTTGTTTTTTTGCCAATAATTCA44643852GGATTTAGCTGTTTTCATTAACCAAACAATATTAACTATGTTATTTATT
chr1:47333644-47333662
CTTACCAGGTAATAGAAGACCCATCCCCTA47333644GGAGTTCCCTGATTTCATCTCAGCATCTCTGCTGATGCTCAGGGTACTT
chr1:50351649-50351667
ATGAGACCAAATTCAGCAAGTGATGATCTT50351649GGACTTCTCTATTTTCATCGCACAGTTGTGGGGAAAAAAACAGTGGCTC
chr1:51466691-51466709
CTTTAATTCTGTTATTTTACATGACTACGT51466691GGAGTTATCTGTGTTTAACAGCTAAAATTTAAAACACAGAAACATTTGA
chr1:54129109-54129127
GGTGCCAGGGGCCATGCTGAGCACTTTCCG54129109TGAGTTATCTCATTTCATCCAAAGACCACTCCAGGCACAACTGTGCCGC
chr1:56818171-56818189
ACATTTTGACTATTATGTCAATGAGGTTCT56818171GGAGTTTTCTGTTTTCCTTGAAAGAGTGTTGTGTTTTATTTTGACGAGT
chr1:66407486-66407504
TCTTAGCAGTTTGCAAAAATATAGTATGTT66407486GGTGTTAACTGTTGTCATCATGCACAATAGATCTCTTGAACTTATTCCT
chr1:70135305-70135323
TACTTGGATATTGATATCTTTCTTAGGTGA70135305GGAGTTATCTGTTATTATCCTTTAAAATAAAATTTCTACCCCTACCTCT
chr1:70550317-70550335
TGCTGTGAACATTAATGTACAAATTTGTGT70550317GGAGATATATGTTTTCATTTTTCTTGGGTAGATACATAGAGATGAAATT
chr1:73799632-73799650
TAAAACAAAAAAGTCTGCTCTCTTATCTTT73799632GGAATTATCTGTTTTAATGGCTTGACTCTTTCCATTAAAAAAAAATAAG
chr1:74541392-74541410
TCTGTGAACTGGTTGGGATGTTTTAGTGAC74541392AGTGTTATCTGTTTTCCTCTTCACAGTTCATCCAGGACTGTTACGGAGC
chr1:74593956-74593974
TTAGATATTGACATCTTTCTCTAGGTTTGG74593956GAAGTTCTCTGTTTTTATCTCATTTTTTTGTCTCCTCTGTATGTTTTGT
chr1:75473103-75473121
CATTTTTCTTCAGTCACTTTTTATTTCTTT75473103GGAGTTATTTGTGTTCCTCATTATACTATAAATTTCATGAGTATGTGGA
chr1:77737279-77737297
ACACACACACACTTAAGCTCTTTCCAGGGA77737279GGAATTATCTGTTTTGTTCTCTGCTGAATCCCCAGTGCCTATCACAGGC
chr1:84535706-84535724
AAATATAAGGGTATTTTTACCAATAACTTG84535706GGATTTAGCTGTTTTCATTAAACCAAGAATATTCCATGTCTTACTTGTC
chr1:88108461-88108479
GGGACTGGACAAACTGCAAATAGATTGCTA88108461GGAGTTTCCTGTTTTCATTCAGATGTGTACAAATTACCTCAACATGCCC
chr1:88951236-88951254
CTGTCAGGAGGCAACTTATGCCAAGCTGCC88951236GGAATTATCTGTTTTTGTCAAGCATTTCTACATGAGACTAACATAAAAT
chr1:107770356-107770374
ACACACACACACACAGATAGACAGACACAT107770356GGAGTTATATTTTTTCAGCCCTGAAACCTTCCATTACCATTTGGTTATA
chr1:108352980-108352998
CAGAAGAGACATACACAGAAAGGAGTGACA108352980GGAGTTGTATGTTTTCTTCTTGGAACCAGAAGAAAGTGAAGTTCTTGCC
chr1:116321539-116321557
GTGTGATTTGTCTGCTCAAGAACACCTTCA116321539GATGTTTTCTGTTTTCATCTCTCTGCTCTGCCTTCTCTTGTCTTTTTTT
chr1:116562275-116562293
AGCTCTTTTTTCTTCAGTGGTGTATTTGTT116562275GGAGTTATCTCTTTTGGTCAGCTTTCAGATCGCTTCGGAAGGAAAAAAG
chr1:120340743-120340761
GGCAAACCCTCATTTTAAAGAAGTCAGAAG120340743AGATTTATCTGTTTTCACCACATATATTTACTCCCTGTGGTCTGGGCTT
chr1:145615437-145615455
TGTGTCTGTGTTCATTAGGGATATTGGCCC145615437GGAGTTTTCTTTTTTCATTGTGTCTTTGCCAGGTTTTGGTATCAGAATG
chr1:150780375-150780393
TCCCCATACCACTCTCCTCCTCCTCACTAA150780375GGAGTTAACCGTTTTGATCCTTGTTGGCCAAAGTAGAAAACACTGCAGA
chr1:157862290-157862308
TACTAATAACTAAAGAGACACAAACAATAA157862290GGAGGTATCCCTTTTCATCTGTTAAACTTGCATACCTCAAAATTTGACT
chr1:158515424-158515442
TCTGTTCACATCCTTTGCCCACTTTTAAAT158515424GGAGTTGTTTGTTTTCATCTTGTAAATATGTTTAAGTTCCTTATAGATG
chr1:161123593-161123611
GATTTTAATGATAGGTGTCATATATAGGAC161123593GGAGTAATCTGTTTACATTCTGTTCTTCTCGATGCACTCACAAGCGGGT
chr1:163930900-163930918
TCTGTTCATATCCCTCACCCACTTTTTGAT163930900GGGGTTTTTTGTTTTCATCTAGAGTTGGGGAAAACATAACATGCAATAA
chr1:173029257-173029275
GACTTGTGGTATCTCTCTAACTTCAGCCAT173029257GAAGTTATCTGCTTTTATCCCCCTTGTGATTACATTGGGCCCATCAGAT
chr1:176633031-176633049
TATTTTGTCTTTCTAAGTATCTGTATGTGA176633031CGAGTTATCTATTTTTATCCTAATCTTCTAAATAAATTTTGCTATGTGG
chr1:178153277-178153295
CCATTCAGACCTTATGCCCATTTTTAAAAT178153277TGAGTTATCTGTTTTTATATTGGTGAACTTTATAGAGTCTTTGTATATT
chr1:180482572-180482590
AGTAAGATTCAATAAGCAAACAGCAGAAAA180482572GCAGTTAGCTGTTTTCCTCTCTTATCTAGTATACATTTATAATTGGGAT
chr1:183055708-183055726
CTGTTTCATCTTTTGTAGACACAGAAATCA183055708AGAGTTATCTTTTTTCTTCCAAAGATGGAAACAACTATTTGAGAACCCT
chr1:199163870-199163888
GAACTAATAGAATTTATGTATATGTAAAAG199163870GGAGTTATTTTTTTTCAACTTTTAAGTTCTGGATTACATATGCAGGATG
chr1:201337809-201337827
TGGATCTTCGTACTATCCAGAAAGTGGGCA201337809GGATTTTTCTATTTTCATCTATTTGTTTGGCAGGATGTGGCCCCCATCT
chr1:202205277-202205295
CAGCATGCCGCTCCTGGCTTTGGTTTCTCC202205277GGGGTTTTCTGTTGTCATCAGTGTGTGGCTGTGTACACTCCTATGCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGAGTTATCTGTTTTCATC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGAGTTATCTGTTTTCATC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.776 | 6.766 | search_plus_done; http://172.18.8.78:28018/match?q=GGAGTTATCTGTTTTCATC&k=3&no_gap=1&offset=0&limit=50
6.788 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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