GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 15:52:44, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6873610-6873628
CATATTCCTTGATTTCTCAAATGAATAGAG6873610GGATAAGGTTCCTTTCTTTAAAAATATCTGCAACATTGCTGGACTGAGA
chr1:17677784-17677802
GCTCATAGGTGCCAGCGTGGTAGGGAAGGT17677784GGATTAGGTTACATTCTTAAAGCCGAGTCTGGTGGCTCATTCCAGTAAT
chr1:22718813-22718831
CTCTGTCGCAAAAAAAAAGGAGCTAGACTT22718813GGAGTCGGCTCCATCCTTTCCTGGCTGTGTGACCTGGGGCAAGTTACTT
chr1:45594321-45594339
ATATTTATTTGTTTTAAAGTACATTTGTTA45594321ATATTAGGGTCCATCCTTTATGTTGTATAGGTCTATGAGTTTGATAAAT
chr1:47232453-47232471
TTCTTTATACCTTAGTGGCTGGTGAGATGG47232453GGATTAGGTTCCTTTCTTTAACAAACTCACAGGGTTTTGTGAGAATCCA
chr1:70110186-70110204
TAACTTTCATATGCTTCCAGTTTGCATGAT70110186AGATTATTTTCCATCCTTTTATTTTCAGTGTACTTCTTGTAAACAGATA
chr1:70290685-70290703
ATCTTTTATTCCTCTGACCCTCACATTTAT70290685GGATTAGGTTTCAGCTTTTGCATTTTCAGTTTCATAGAAAAATCTGTGT
chr1:81127278-81127296
GGAACATTGCAAGTAATTCTATTTGTTGTT81127278GGATAAGGTTCCATACTCTTTGGGCCCTAATTAGAGTAAACTGAGCAGA
chr1:82375368-82375386
AGTATACAGATAGTTAAGGTAAACATATTC82375368TGATTAGGTTCTATTCTTTCTAGTTCAAACCATTGCTTGTTTTTTTTTT
chr1:83790368-83790386
ACTTGTCAGTTACTGGACCTCTGCACTTGT83790368TTATTAGGTTCCATCCTTTCCTTTATGTTTTTGATTCTACTTTTATTTC
chr1:94096816-94096834
AATCTTCTTCTTATAAGGACACCAGTCAGT94096816GGATTAGGGCCCATCCTTGTCAAATATGACCTCATCTTAATTTGATTAT
chr1:101622204-101622222
CAAAAATCTATACAAATAAGTAATGCTCCA101622204GGAATATGTTCCATTCTTTGTGGGAGAAATTCTTTGCAGGTATGTGCAA
chr1:109866355-109866373
ATGACTCAAAGGCTGTGACCTAAAGACAGT109866355GGATTAGGTTTTATCCTTTGGGATATGAAGACCAGCATACAGCCTGCTA
chr1:121363118-121363136
ATTTTCTGAGAATGCTTCTGTCTTGTTTTT121363118AGATGAGGTTACATCCTTTACTACGATAGGCCTCAAAGAGGTTCAAATC
chr1:121367121-121367139
ATTCTCTGAGAATGCTTCTGTTTTGTTTTT121367121AGATGAGGTTACATCCTTTACTACGATAGGCCTCAAAGAGGTCCAAATC
chr1:159601598-159601616
GACTTTATTTTTAAGTATGATGTGAGGCCA159601598GGATTAGGTTTCATTTTTTTCCATTTAGATATTTAGTTGATTCAGGATA
chr1:164269628-164269646
ATTATTTTTCCCTGCAGTATATGAAACAAC164269628GGATTAGCTGCCATTCTTTCCCAAGCACCCTGAATATCATCTTTCTTGC
chr1:171447366-171447384
TTCCCTGACCCCCACCATCCCTGCAAATGT171447366GGGTTAGGTGCCTTCCTTTGGACTCACAAGGCACTTTTAATTCTCTCAT
chr1:183972348-183972366
GACTTTGACATTCCTCCTATCAAAAGATAG183972348GGATTAGGTCCCCTCCTCTTAAATCTGGGAAGCAGAAGTGACACTGTCT
chr1:190858678-190858696
TTATCCAAGCCATCTGTAAAATTTAAAGTA190858678GAATTTGGTTCCATCCTTTGACTAAAATCTTGAGTGCATTAAAATTCAT
chr1:192153756-192153774
CTGCTTCTAACATATCGCATGTTTATGTTA192153756AGATTTGGTCCCATCCTTTAAACTGAAATATGTCATGTGAAATTATTTT
chr1:204704563-204704581
TTGAGCCTGGAATGAGAAGTTCAATTGTAT204704563GGATTAGGTATCATCCTCTTCTTTGGCGCTGAAAATAATTGGTGTTCCC
chr1:215856937-215856955
TGCTTGAGCACTGTGGATCTTAGATGTTTT215856937GGATTCAGTTCCTTCCTTTGGAGATGTAGCGTTCTGTCTTACTAACTAG
chr1:220582754-220582772
AAGTGTGAATAGTGGTTACGTTAAGTAGGG220582754GAATTAGGTTTGATCCTTTCTGCTCCTTTATTTGGCTTATTTATGTTAC
chr1:222361161-222361179
AGCAGATGTTCCCTCAGGACCCTTTGGCCA222361161GGATTAGGTTTCATGCTTATGCATCAGTAGCAAGAGAAGCTGGGGAAAA
chr1:226058833-226058851
GGACAGCATCCCTGGAAACGGAGAGAACAG226058833GGATTAGCTTCCAACATTTGTGTCTTTGAGAGGCAGATGTAACCATTGT
chr1:226999968-226999986
GTTTATTGACTATATTTTCCCTTTCCTAAA226999968GTATCAGTTTCCATCCTTTGCCCACACATCTGTGGGGAGTTCACTGGGT
chr1:245566774-245566792
AAGCTGTTTCTTTGCATTCTTTCCCCCAAA245566774GGAGTAGTTTCCATTCTTTCTGAAAAACACTGCTTGAGCCTCGTCCCTT
chr2:5661997-5662015
GGCTCCTGAAGACCCCAGCTTCACACCATT5661997GCATTAGTTTCCATCTTTTTCCCAAAATAAACAATTGGGGAGCCGAGCT
chr2:28418411-28418429
AACTCACAGATTCATACTGTGGCAACTGAG28418411GGAATGGTTTCCATCCTTTTGGGTGGAGAAGTCTATCAAGAGGGCCAGG
chr2:42460288-42460306
TTCATGTTCATAACTCCTCACATTTAGTTT42460288GGTTTAGGTTTCATCCCTTCACAGCAGTTTTTGGTGCATGTGTGTTTAT
chr2:48956322-48956340
ATTTCAGACAAATTGAGGAGGTTGTCAAAG48956322GCATTAGCTTCTATCCTTTCCAGGGAATCAATCTGAGAGATTTCACTAG
chr2:49936055-49936073
GTGCCATGCCTAAAGCCTACCCTTTGATTA49936055GCATTAGGTGCCATCCTTCATCTACATAGGGCCCCAGCAGTACTCTTGT
chr2:51511055-51511073
AAGGTTGAATTTATTTTTTCACAGCTATAA51511055GGATTAAGTTGTATCCTTTACTAAGCATGGAAATGTGATTAATTTTAGT
chr2:63252226-63252244
TTTGGTTTTAGATAATGGAATTTCATTAAA63252226AGATTAGTTTCCATCATTTATAGATGATAAAAATGTTTTCTTTAAAATC
chr2:64188124-64188142
CTCAGAACGTTTTCTTAACCATCCAAGTCT64188124GGATTAGGTTCCACCCCTAAGGTCAGAGCTCCACAGCAATCTTTCCATT
chr2:64584381-64584399
TACCCAGCTTTTAATAGCCCAAGCAGTCCA64584381GGATTTGGTTCCAGCCTCTGCCCTCCTTAGTCTCTTCTACCTGAGGCAC
chr2:66361082-66361100
GACATTTCTCATTGGATCAGCTTATTGTAA66361082GTATTAGGTTTCAGCCTTTGAGCATATATTGCTGGTTTTCAGTTACTTA
chr2:69889549-69889567
CACTAGGGCCAGTCTAGATTTAAGGGAAGG69889549GGATTAGGCTCCATCCCTGAGTGGGGAGGGGTGGGAGGGTGCAAAGAAT
chr2:76904718-76904736
CTGGGGCTCCAGCTTTTGCCAGGGTGCCAA76904718GGCTTATGTTCCATGCTTTGTTGTATATCACACTGTTGGTATCTTAAAA
chr2:80354202-80354220
AGGAAACATTTTTGGAGAAAACTGAAATGA80354202GGACTAGGTTGCATTCTTTGACAAGGCTGACCTTGCAAGTTAGTCAGGT
chr2:80713116-80713134
TTTTTGCATTTGTGTGACATTATTCATGTT80713116GAATTTGGTTCCATTCTTTTTCCAGCTCCTAATTACACCCTCAGACTCT
chr2:82521720-82521738
AGTGTTTCTAAGCTGGCTTACTGGAATGTT82521720TGATAAGCTTCCATCCTTTTTTGTTTTCTTCTTTTTGATAATTTATTTT
chr2:83703984-83704002
GTATTTAAAAAGCAATAAACTTACTGAGAT83703984GGATAAGGTTACATCCTGTTCTGTTTAGCAAACAGAGTTGGGAGTACAA
chr2:83707405-83707423
TTACGAGTTGTCATATTACTTGCTATGTTT83707405GGATCAGCTTCCATCATTTTATCCTTCACACTTTTAATTTTGAGAGTTT
chr2:97485047-97485065
GGTGGCCAACATTGCAACCCTGGAATCAGC97485047GGAGTAGGTTCCATCCTGCCCTTGCCTGCCCCCAGGCCCTGAAGGCTGC
chr2:100175948-100175966
ATCATTATAAACAACAAAAACACTATGCTG100175948GGAATAGGTGCCATCATTTTATTATTTCCTATAATATTTTGTATACTTA
chr2:102680054-102680072
GCAAGCGAGTGAGCCCCACAGGGACCCTGT102680054GCATTAGGTTCCATCATTATGCATCATTCCTCTTTTCAGATGAGGAAGC
chr2:106801192-106801210
ATACCCCACCTCTTAATGCCATCACTTCAA106801192GGATTAGGTTCCAACATGTGAATTCCAGGGGACACAAACATTCAGATCA
chr2:107244269-107244287
TGGGCATACCTTGGTTTGTAGACTTCTCCA107244269GGATTAGGTCCCATACTTCTAGAGGAGAACACTGGAATCCCAGCTGGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGATTAGGTTCCATCCTTT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGATTAGGTTCCATCCTTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.074 | 6.064 | search_plus_done; http://172.18.8.78:28018/match?q=GGATTAGGTTCCATCCTTT&k=3&no_gap=1&offset=0&limit=50
6.086 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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