GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 12:32:53, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3306483-3306501
AGCATGAGCGGAAGGCACAGAGGGGCCCTC3306483GGGAATCTCCATGCACTTTTCTGGGGGTGCGCCCCCCCCCCCCCCCCAC
chr1:5808695-5808713
TTCTGTCTGATGCCTGCAGAGAGGGGCCTG5808695GGCAAGATCCATGTTCTTGAGCAATGGACATTGTCCTCTCTGGCTCCAG
chr1:12263195-12263213
TACCTGGCAGTGCCAGCCAGTGAGAATTCA12263195GGGAATGACCATGAACTTGGGTCAGTCTGAGATCCTTGCCTGGCCACTC
chr1:18133464-18133482
GTCAGGGCTGCCTCCTTTTGGGGGTTCTAG18133464GGAAATATCCATGTCTTTGCCGTTTCCAGCTTGTGGAGGCCACCTGCAT
chr1:34162193-34162211
AAATAGAGGAAGTAGCTAGAAAGGTGGGAG34162193GGCATTATCCATGTCCTTGGTTAGAGCTTCCTTCCATATTCCAGACAGA
chr1:48282024-48282042
CTCAAATTCCCCATGGCTCCCCTCTGCCCT48282024GGGAATAACCATGAACTTCTTCAACATGGACTCTCAGAAGTACTTGGCA
chr1:68165985-68166003
ATTATAGAGCCCCAAATAAAAAGGTTTAGA68165985GGGAATATCCATGTGTTTATGTGTAACTGACCCTCGTGCCAGGGAAAAA
chr1:77923856-77923874
GTCAGGGGTGGTTCCTTCTGGAGGCTCTAG77923856GGGAAAATCCATTTCCTTGCCCTTTTCAGCTTCTAGAGGCTACACACTC
chr1:79232807-79232825
AAAGGGGTGAGTGAATATAACACCTTTAAC79232807TGAAATATTCATGTACTTGTGTTGGGAATAATCAGGAAAACAACTCGAC
chr1:109545955-109545973
TTGCATCATATTTTAAAGCTCTGTTGTTTG109545955GTGCATATCCATGTACTTTTAATAGTAATTTTTCTACTTCATTCTTTTT
chr1:157351476-157351494
TTATTTTTAAGAAGCTTAGGGAATGATGGG157351476AGGCATATGCATGTACTTGGTTCATGAATATCTTGAACAAGAAGTCCAA
chr1:185762420-185762438
AAAGGGATGCTTACCATCTGGAGGCTGGAG185762420GGGTAAATCCATGTCCTTGCCTTTCCCAGCTTTTAGATGTAACTTGCAT
chr1:187814293-187814311
CACTTTTGCTTCCCATATCTTCTGCTGTCT187814293GGGAACAACAATGTACTTGCCTAGGGATTTCTGACCTCTTTTTATTTTT
chr1:188614436-188614454
GTCTATTTAAGTCCTTGGACCATTTTAAGT188614436TGGATTATCCATGTTCTTGCTCTGGAATTCCTTATATGTCTTCATATTA
chr1:189787062-189787080
TCCTGAAACATAGAAAACTATTTCAAAATG189787062GTGAATATCCATGAACATGACAACTCTTCCTTGCTCCTGTCACTTTATA
chr1:191615384-191615402
TTTAGACATTCTAAATTGGGTAATTTACAT191615384GGGTAAATCCATGTAATTGGGTACTAGAATTATACATTAAGAAATAAAA
chr1:208011759-208011777
CAGGGCTCTGGGTCTCTGCTCCCGGGGCTT208011759GGGAACATGCATGTCCTTGGTGAGAAGACCACATAAAAGGGCATGGCCT
chr1:221917148-221917166
CTCCAAGCCTAGTAGTATACTGAGTAGCAG221917148GGGCATATTCATGTAATTGTTTTCAGGGCAGATCTGAAATCAGGAGGTG
chr1:231262565-231262583
CAAAAAGAAAGGAATGGAGTGGAAGGATGC231262565AGGAATATCCATGTACAAGAAATTGGACTTCCCATGGGACTGGAACCAG
chr1:232222827-232222845
GTACCCTCAGAAATGAAGAACCAAAGGAAT232222827GGGAAGATCCATGTATTTTTATGGACAGTGGTGCAGAAGTATGACTGGA
chr1:245708298-245708316
TCTGGAGGCCATGGTGATGGAAGAAATGGA245708298GGTAATTTCCATGTACTTGGAGTTGAGGCATGCACACGCACATGCGCGC
chr2:286854-286872
AGACCACGTTTCAGTGAGGTGTAAATTAGT286854GGGAATATGCATGAACCTGGTTTGTAGGGTAAGAATCCCAGGGAAAGAC
chr2:8011665-8011683
CACAGAAGATACATCAGTGAACAGATGAGA8011665GGGAAAATCCATGTCCTTATGGGTTGTAGTTGATGAAAAACTTTGCTTT
chr2:8170598-8170616
ACACGTTTTATTCAGCTATTTTGGAGTGAT8170598GAGAAAATCCATTTACTTGACACTGAAATGTTAGAATCCCACAATTTAT
chr2:8224344-8224362
ATCACCATAACAATCCCATAGTGTGCACCT8224344TGAAATATCCATGTAGTTGGTGAGGAACCAAGGTTCAGAGAGAACATGC
chr2:10804607-10804625
AACTGAGTATTAGCCATTACAAAGAATGAT10804607GTGAATATACATGTACTAGAATTGTGTCCACAAAAAAGCAATTTACTTT
chr2:37469334-37469352
CTTACTTGCCTAAAGACAAGCAAGGTGTGG37469334GGGAAAATCCCTGTACTAGTCAGGAATACTGACTAGTATTGACTAGTTT
chr2:39904178-39904196
GAAGGTAAATGTTCAAAATTGTGCATTCTA39904178GGGAATATTAATGTACTTTAAGATCAGAAGGTGCAGTTGCTATGAATTT
chr2:45892239-45892257
CTTCTGAAAAGATTACTGTACTCTCAGTGA45892239GGAAATATGCATTTACTTGTAATTGTTAAGAGCCTTGATCTTTAAGCTC
chr2:61336039-61336057
TTACTATATTGTAATTTAATCTTAATATCA61336039AGGAATATACATTTACTTGAGTGATAGAGGTACAATTCAACAAATACTG
chr2:72177994-72178012
TGTGGCATAACTCCCTTCCTCACTGGCCTT72177994GGGAAACTCCATGAACTTGGCCCCAGGGCTAGGGTCAGGCAGGAAGTGT
chr2:80433551-80433569
GCTAAACTGAATATATGACTTGCACATATA80433551GGGAAGATCCTTGTATTTGTAAGATGCTATCACATCACATCCAATGTTC
chr2:103648236-103648254
TTGACACTGAAATATCAGTCATCTCTGAAG103648236TTGAATATCCATGAACTTGTCAGGTATATGTCAGGTATATTGTATGACA
chr2:115596768-115596786
GGCAGAATTGGATAATCTGTGTTGCCACAT115596768GGGAATATCTATGTAAATGGCAATTAAATACATCCTATTAAAGTATGGT
chr2:119595665-119595683
GTATAGTTGTGTGCCAGAACCTTCTACACA119595665GGCAATGTCCATGTGCTTGCTGTGAACACACTGTATATTGGTCCACTGA
chr2:120484853-120484871
AATATATGTAAATTAAATTACTCAAACTAT120484853AGGAATATGCATGTATTTGAGGGGGACATAAATATTTTTAGGGCTTGCA
chr2:120578300-120578318
TGTATATCAGGAATTTGGTTTCATATTAAA120578300GGTAATATCCATTTATTTGAGTCTTTGCCCTTATTATTTAACATTCTTT
chr2:147979713-147979731
ATTGAACCTCTGCTCTCAAACTCACCCCTT147979713GTGAATGTCCATGTCCTTGATTTCCTTGGTATGTGGCACCAAACCTCAG
chr2:149086935-149086953
AAATGCTTTTTTAAAGGCTGTGAGCTTATT149086935TGGAATATCCATTTACTTTCAATTTTTATTCTGACTTCAAAGTATTTTA
chr2:151165482-151165500
AATGAGGCACATAAATACAGGACCTTCAAC151165482TGAAATATCCAGGTACTTGCACTGGGACTGATCAGAGAAACAACTCGAC
chr2:166308752-166308770
AAATGAATAAAATGTGTGTGCTTGGGGATG166308752GGGTATGTACATGTACTTGATTTTATGTATATAAAATTCAATTGCTTCT
chr2:168287583-168287601
AAACTGTAATGTCCTTTATGCTGCTGCCTA168287583GGGAAAATCCATGTACTTTGATAGCCAATTGAGTGGATAGTACAATTAA
chr2:175920851-175920869
CTTTCTTTTTTCACTTTGTATTTCACTTTG175920851GGTAATTTCCATGTACTTATCTTCAAGTTTATTGATTTTTTCCTTGGCT
chr2:181363831-181363849
AATTATATATCAATGTGAATAAGATATATA181363831GAAAATATCCATATACTTGAAAAGTAAATATTATTTAATTATATTAAAT
chr2:184218522-184218540
AGTTCTGGGCACGGGGGGCTGGGGAGGCAG184218522GGGAATATCCATGGATTTTCTACTAACTCAGTAGATTTTTTTTCTCTCT
chr2:199398265-199398283
CCCCTCCCTAACTCACCCCGCCAGTGTTAT199398265GGGAATAGCCATGCATTTGACAAAATAAGAAATAGAAATAACCTCATAT
chr2:210776272-210776290
TCGTTTTGTCAGAGTTTTGAAAGACTTTCT210776272TGGAATATCCATGCACTTTTAGATTTGCCTTTTCTTTCAAAATATCTTT
chr2:224329577-224329595
CAGAGCTGCATTGCATTCTGGAGGCTCTAG224329577GGGAATATCTATTTACTTGCCTTTTCCAGCTTCTACAAGCTGCCCACAT
chr2:233956168-233956186
GCAGAGCTGAGCTCCTTCCAGAGGCTTCAG233956168GGGAAAATCCCTGTTCTTGCCTTTTCTGGTTTCTAGGGGTCACCTGCAT
chr2:234345573-234345591
TGGTGAGATGTGCTTCCAGGGAGAGACTCA234345573GGGAGCCTCCATGTACTTGCTTCTGGGTTGGTCATTGTGAAGTGGCTGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGGAATATCCATGTACTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGGAATATCCATGTACTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.210 | 5.200 | search_plus_done; http://172.18.8.78:28018/match?q=GGGAATATCCATGTACTTG&k=3&no_gap=1&offset=0&limit=50
5.222 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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