GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-04 03:30:51, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3224004-3224022
GTGTCATCTTCCGGTTTCAGATAAATCTGG3224004GTGTCCTCTTAGATGTTTCAGTTTCAATAATAATGAGGGAGAAAATTCA
chr1:34817387-34817405
CAGAACCTGCAGGTACAATGAATCTTTCTT34817387GGGGAATCTGAGATGTTTCCTTGGCTAGGCTAGAAGCAAAGAGGGTGTG
chr1:51595757-51595775
AATCACAGAGTTTAATCATTTATGCATTGA51595757GGGATATTTGAGATGTTTCCAGTTTGCAGCTTGCACATAAAGGGCCACA
chr1:63250203-63250221
AACTGTGGGCAGCTGTTCCTCCTTTCCTTG63250203TGGTTTTCTTAGATGTTGCAGGCAAGACTCTTTCCCCTGATCTATCGCA
chr1:74082161-74082179
GTTATCCAGATACTTGAAAAGTCCTGTGTA74082161TTGTTATCTAAGATGTTTCTGTTTTAGGGAGTACCTGAAGCCCCATAAT
chr1:82964330-82964348
TCTATCACCTTTCTGCTTTATCACGGATGA82964330GAGTTAACTTAGAAGTTTCAGAAAAAAAAACTAAAAATAAAATTATACT
chr1:90768633-90768651
CTTCCCACAGCCAAAACATGGCCATTAAAA90768633GGGTTTACTTGGATGTTTCCCTCTTTCTATATTGATCCCTTTTCAGTGA
chr1:108758894-108758912
AGATGCGAGCTGTGCAAGACAGCCAGGGTG108758894GGGTTGTCTTAGATTTTTTTCTGAAAGGGATTTCTGGAAGAAATACAGA
chr1:110755230-110755248
AGGCAGGGTTGAGAGGAAGGAAACTAGGGT110755230GGGTTTTGTTAGATGCTTCCATGCCGTGCCACCTCATTTACATCCTCCC
chr1:177288468-177288486
GGCTCCAAATTAGAATATACTTCATTGGGG177288468GTGTTATCTTTGATCTTTCTTTCCTAAGAGGAGTGGTCTAGAAATATTG
chr1:177297392-177297410
CACTAACAATAGATTGTATACATGTTTTTA177297392TTGTTATCTTAGATGATTCAGGGGAGCCAAAAAATTCTCAGAAGTCTTA
chr1:190101525-190101543
GTAGTGTATTGTATTACATCATGTAGGACT190101525GTGTTATCTTAGATATTTGTATTATATTGGGTTGTAGTAAAACTCATTT
chr1:213309927-213309945
AACAAAAATGATTGTTTTGGTTGTTCATGT213309927GTGTTCTCTTACATGTTTCTTAGATGATAATTCTCTAGAGAACCGGCAT
chr1:229744022-229744040
ATAAGGGTTACAAAATAAAACCCTCTAGTG229744022GGGTTATCTTATCAGTTTCATGGTTGTTGGGTGACAGAATTCATAAGTA
chr1:245813846-245813864
CATGACCCAATTATCTCAAAATAGAATTTC245813846TGGTTCTCTTAGATGTTGCTTTGTAGAGGGCACAGGCCCTTAGAAAGCA
chr2:166922-166940
CATCCAAATCATACATTTAAAAATTAGATG166922GGGTTATCATGGATGTTTATATTGATTCCTAGAATCAGACAAATACACC
chr2:30497623-30497641
CGTGGGTCACTCCTTATGCTACCAATACCA30497623GGACTATCTTAGATGTCTCGGCCAAAACCATAATCTCTGGCCCCCAAAG
chr2:32722164-32722182
TAAGACCTTAAAAAAATTATGAATGTCTCT32722164GGATTTTGTTAGATGTTTCCCTGCATCTGTTGAAATGAACATAGATTGT
chr2:34343205-34343223
GACAAAATCATAGAGATCTGCTTGATCTCA34343205GGGTTATGTTAGATTTTTTTTTCCCCAGAATTACATCACTTGTAGAGTT
chr2:59126015-59126033
GAAGGTTCCAAAGGTCAGTGTGATACACTG59126015GGCTTATCATAGATATTTCAGTGGGAAAACCATTTTGATCTCCTGCCTG
chr2:59616231-59616249
AAAATAAGTTTGAGGGCTGACAGAGGCTCT59616231GTGTTATCTTAGACTTTTCTTCTTCACTCTGGGTGTGTCACATTGTTAC
chr2:64957226-64957244
ATAAATCTTTCCAATTAAGTTGTGAGTGTA64957226GGCTTATGTTAGATTTTTCAAAGGCTCTCTCAGAAGCAGAGGAGTGGGT
chr2:66337537-66337555
AAGCAAAGACATTTAATGCTTGGAAAATAA66337537GGGTTTTCTTAAATGTTCCTTAATAATAATGGAGAAGATATGAATTTTT
chr2:69184390-69184408
TGCTCATTTTATTTTTAACTTTTCTGTGTG69184390GCATTACCTTAGATGTTTCTCTAGCTTATAGTATTTTACCAAGTTTTAT
chr2:70496276-70496294
ATTTGATCATATTCATGAAGGTTTATTTCT70496276GGGTTTTCTTATTTGTTTCAAGGATCTGTGTGTCTGTTTTTTTTTTTTT
chr2:78606920-78606938
ATATGTTGGATGATGGCATTGAAATAATGC78606920TGATTATCTTAGATGCTTCATGTGATATAGTTTCATAGAAGAATTTAAT
chr2:82335310-82335328
AGAGATATAGTTAGGCCGAAAATTACATGA82335310GGATTATCTTTGATGTTTTCATGGTGACTGCATTTTAGTTTCAAAGAAA
chr2:85535223-85535241
TCCCACCTGTCAGTGGATCCAGGGGAGCCC85535223GGGTTTCCTTGGATGTTTCTTTGGTTGAACACCAGAAAAAATTAGTTTG
chr2:102166519-102166537
GCAAATGTAGACACTACCCCTGCTTGCATG102166519GAGTTATTTTAGATGTTTTCTCATCACAATAATCAATAAACATTGAATT
chr2:120166888-120166906
TGTGGGTACATAGTTGTTGTGTATATCTAT120166888GGGTTACATTGGATGTTTCGATACAGCATGCAAAGTGTAATAATCACAT
chr2:131387244-131387262
TCACTATTAGGAAGTGGAGAACAACATACT131387244GTGTTACCTTATATGTTTCTACTGTATTTTAAAGTTGTGTTTCTGGTGG
chr2:132709579-132709597
GTAAATGTTGTAAATGCGTGATTTACATCT132709579GGGTTCTCTATGATGTTTCATTAGTCTGTGTTTCTGGTTTTGTTTGTTT
chr2:149493970-149493988
ACCAGAAAGCAAGAAAACTAAAATGTGGTA149493970GGGTTACCTTACATGTTTTCCTGGCCCAGATCTGAAGTCATTCATTTCC
chr2:151664916-151664934
TCTGTGAGTACTAGGAGGTAGGGGTCATTA151664916GGGTTATTTTAGAGGCTTCCTACCCCAGAGTTTTCATTATTCTAAGAAT
chr2:153374834-153374852
TGAGTAGCTCAGAGGCTTGGCTCATGGAAG153374834GGGTTATTTTAGATGCTTGGTGAATGATTACCCAGTGGAGCTTTAGTTT
chr2:162189073-162189091
TGCTTCCATCTGTGAAATTGTTGATCAGAT162189073GGGTTAGCTGGGATGTTTCCAGACTAGGGCATCATAAATGGCACTTGAA
chr2:170686517-170686535
ACTTTCCACTGTTCTACATCTTGCATTTTT170686517TGGTTATCTTAGATGTATTTTTCCTATTAAAAAATCAGTGTCGTCATTC
chr2:214398927-214398945
GTCATTTTTTCTACAATGGTGTTAATCTTT214398927GGGCTATCTTATATGTTGCAAATGATTTCTACTTTTTTGGTTGTTTTAC
chr2:215487119-215487137
AAGAAGAAACTGAATTGTTTTTATGTAATA215487119GGGTTATATTAAATGTTTTAGAGGTGTCTTGAAAAAAAAAATACAGGGT
chr2:221725582-221725600
CTAGGCTGGGGTACCCAAATATTTGGCCAA221725582GCATTATTTTAGATGTTTCTGTGAAAGTATTTTTTAGATGAGAATAACA
chr2:224828928-224828946
TCAGCCAACTATTTGCTATAGACTTTCAGT224828928GTGTTATCTTAAATTTTTCTGTGTAGAAGTACAAATGTTGACTTGTTCG
chr2:232744765-232744783
ACTCAGTGGGCATTGAGGGTATAGGCCAAT232744765GGGCTCTCTCAGATGTTTCTGGGATCAACTGGTAAAATCCCTTTACCCC
chr3:5431387-5431405
TTTAACTTTCTGACAGAGCAAGACACTCCA5431387GGCTTATCTTACATATTTCCTGCCCTGGTTTTTGGTACTTTTTTTTTTA
chr3:23715474-23715492
CTTCCTTATGTCCTGACACAAGATGCTCCA23715474GGCTTATCTTATATATTTCATGCCCCAGTCCTAGAATCAGCTATTTCTC
chr3:24671630-24671648
TTTCTTACTTTCTGACATTAAGCTGCTCCA24671630GGGTTATCTTGTATATTTCCTGCCTCAGCCCTGGAATCCTCCATTTCTT
chr3:32180982-32181000
TTAAACAAATTTCAACATAATTGGATTCCT32180982GGGTTATTTTAGGTGTTTTGTTTTATGCATATGAAATTCTGAGAATGAG
chr3:41649898-41649916
TTTGCTGACATTTCTACTTTCTCAAAAAGT41649898GGGTAATCTCAGTTGTTTCTGTTCATGAATAAACTTTATAGGGTCCTGT
chr3:44126653-44126671
TCACAGATTGTTTAATCATTTACCTATTGA44126653GGGATATTTTAGTTGTTTCCAGTTAAGGACTATTTCAAGTAAAGCTGCT
chr3:51022040-51022058
CTGCTGAGAATACCACTGTTAGTCTGATGG51022040GGGTTTTCTTATATGTTACTTTATTCATTTCTCTTGCTATAAACTTCAG
chr3:58083840-58083858
TAAATAATCACAAAGACAATTTTTTCAAAT58083840GTGTTATATTAGATTTTTCAAAACCAGCTTTTCTTCTCTAAAATACTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGGTTATCTTAGATGTTTC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGGTTATCTTAGATGTTTC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.312 | 5.302 | search_plus_done; http://172.18.8.78:28018/match?q=GGGTTATCTTAGATGTTTC&k=3&no_gap=1&offset=0&limit=50
5.324 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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