GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 08:43:39, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5000340-5000358
AAAGGGCAAGAGAGAGATGGAATACAAATT5000340GGGTTTTAGGAGGAGAAACTTTGCAATTCTGGTGTGTGAGAGGCCCAGT
chr1:22685232-22685250
TGATTTTGTGCCTCAAGGGCTAAAGCCTTA22685232GGGAATTTGGTAGAAAAACGTAAGGATGTTGGACTGTGTTGGCTCCTTT
chr1:27862996-27863014
GCCTGGGAGGGTGACAGCTGTGCTGCAATG27862996GGGTGATAGGTAGAAAAGCAGCTCTTGGGGCAAGGGCTGCTGCTGGGAT
chr1:34386553-34386571
GTGCCTGCCTGGTAGGCCTCAGGGGAGAGG34386553GTGTTTTAGGCAGAAAAACAGCAAGGACAGTTCAAGTTGGGGAGTGTGG
chr1:47844271-47844289
TTACTAAATTATGAGGCTTTGCTTTTTGTT47844271TGCTTTTAAGTAGAAAAACATGTTGGCAACATTGAGTTTTGGAGTTGAT
chr1:54099292-54099310
CTCCATGTCTGGAAGAAATTAGGACTTCGT54099292GAGTTTTAGGCAGAAAAGCAACATTTCTTGTGTCTCAACACTGCGTGTG
chr1:57257662-57257680
GGTCATATACATAACCACTCTGAATCAACA57257662GGTTTTCAAGTAGAAAAACATGATGACACCTCCCTAGCCCCTGTCCCAT
chr1:66091532-66091550
GAAGACTATAAGACTTTTTCTTAAATATGA66091532GGGTTTTATGTCAAAAAACCTATATACTTATCTAAGTAAAATTGCCAAA
chr1:72005480-72005498
AAATCCTCTTAGTTAATCAAAAGCCAATTC72005480TGGTTTGAGTTAGAAAAACATCGTTTGTAGTAAAAAAGAAGTACTGATA
chr1:86212656-86212674
TTGTTCACTTGGTCCCCTGCTGGTGATTAT86212656GGGTTTTAATTAGAAAACCTAGCATAGTGGTTCTCAAACTCTTCAGAAT
chr1:86494506-86494524
TAAGTTTTGGAGCAGAAAAGTAGAGATAGA86494506GTGTTTCAGGTAGACAAACATGTGCAAAACCTTGTAGCAAAGATGCTGC
chr1:88311586-88311604
TATAATTACTTATATTTAAAATTGTACTGA88311586GGGCTTTAGGTAGTAAAATAAGACAAAAAAGGAAAAAGACATCCAGATT
chr1:95974702-95974720
GAGGAAGTTAGATTTGTTTATAGAGCTCTA95974702GGGCTTGAGGTAGAAAAAAATTATCTCCAGGACTCTTTCCTGCCTGGAA
chr1:99163214-99163232
GAAAATATTTATTGAACTCATTACATATAA99163214GGGTTTGAGATAGAAAAATAATAAGACTCAGTCCCTGTTTTAAGGAGTA
chr1:104127434-104127452
TGTTTTTAGGCAGAAACAGGTGTGTTGAAA104127434GGTTTTTAGGTAAAACAACCACCACTTAGACTTCAATAAAGTAGTATTT
chr1:114012730-114012748
TAAAAAATATGCCATCAAAAGATTGGAGAT114012730GGATTCTAGGTAGAAAAATGAATTTATCTGTAGGCATTATCATGTTGCA
chr1:119014319-119014337
AATTTTTTGAGAAAAGGAATTTAATGAACT119014319GGTTTTTATTTAGAAAAACTAGGCTTGTAGCAATATGTAAGGACAGACT
chr1:119168678-119168696
TAATTCTTTCATACATTTTCAATTTTAAAA119168678TTGTTTTAGGTAGAAAGACAAATATAGTTACTATTGCTCTGTCTTTTCC
chr1:156811137-156811155
TGAGCCAGAATCATGGGGCCGGGTGGGGGA156811137GGGTTGTAGGTAGATCAACAATGAGGAAGGGGCAGGGGAGGTGACTCAC
chr1:158621834-158621852
AAAAATCTAAGGGAAGAAAGAATATTGAAA158621834GGGTTTTAGGTAGGCAAAAAATTAGAAATTGTTTGTCAAGTCAGGTTCT
chr1:162866247-162866265
CAGCTGACTAGGTACTTCAGACCATCTATT162866247GTGCTTTAGGTAGAAAATCTACCTAAAAGTAATGAGAAAACTTGCAAAG
chr1:176677625-176677643
TAGAGACAAGAAGTAAGAAGAGTAGTTACT176677625GGGTTATAAGAAGAAAAACAAAACAAAACTATACGTACATGTAGAGAGA
chr1:181186812-181186830
TCTTGCTTTAGGGGTTTATGAACAACTTTT181186812GAGTTTTAGGATGAAAAACCGATGCACAGGGACCAAGCTGGGTTTTGTT
chr1:181613673-181613691
ATGTGGGTGTGGTCAGAGGAATCATACCTT181613673GGCTTTGAGGTAGAAACACCATCCAACTGGTGTGACTCAGGGGAGGGGT
chr1:183604260-183604278
TTCTGGAGCTAATGTGACCCCAGGAAATCA183604260GAGTTCTAGGAAGAAAAACTAAGGCGCTCGGCACCAGCCTTCCCCACCA
chr1:188588052-188588070
GAAATTGTTTTTTCTCCATAAGAATTTCAT188588052GGGTTTTTATTAGAAAAACAACGTTTTGAAAGAAACTAATACTAAAAGT
chr1:193871443-193871461
GCTATTGGGGGAAACTATGTGAATGATTTG193871443GGGGTTGAGGAAGAAAAACAATGAAGATGGAATATTGTGGGTGACAAGG
chr1:194132070-194132088
GTCATGTTCAAGGAAATCAAAGGAACAAAA194132070GGTTTTAAGGTAGAAAATCTTTACAACACAGTCAAATGAAGGAAAAAGT
chr1:195378464-195378482
TATAGACAACCAGAGGAGGCAGAAAGGGAA195378464GGGTCATAGGTTGAAAAACTACCTATTGGGTTCTGTGTTCACTACCTGG
chr1:196349746-196349764
TTTACAGAAATCAAATATCCTTTGGAAAAT196349746GGCTTTTAAATAGAAAAACGAACCAGGGTGGATTTTAAAATCTAAATGT
chr1:208369668-208369686
TGAGGACTCAACCAAACACACTGTTTCCTA208369668GGGTTTTATGTTAAAAAACAAAAAACAAAAAAAAAACCATGTTCTCTGC
chr1:208777653-208777671
CCACGTCCCCTTTTAAGAAAGTGAAGACTC208777653GGCTTGTAGGTAGAAGAACCAGTGTGAACTGTGGGAGTGGGCTAGGGGG
chr1:218159913-218159931
ATGAGAACATCCATATCCCACCATTATCCT218159913GGGATATAGGAAGAAAAACATCCCGACATATTATCCTAGTATACAAGAA
chr1:222706798-222706816
ATGTGTGTATGGGGGCAGGGTGGTGAGTGG222706798AGGTTGTAGGGAGAAAAACATGAAGAACAATGAAATCCCAAAGCTCTAG
chr1:227045474-227045492
TGGGGAAAATCCCCATACGGTTGGTCAGAA227045474GTGTTTTGAGTAGAAAAACAGTGTTTTTATAGACCCCGATAATTTTACT
chr1:244053588-244053606
TCACAGAGCAAGTGAGGTACTCAGGAGGTT244053588GGGTTTCTGGTAGAAAAAGGAACAGGTAGAAATTTTAGACACATCATTG
chr1:245001996-245002014
CTCACTCAAGTGAGTTAAAGGGAGAATGGG245001996AGGTTTTAAGTAGAAAAGCACACCTACACTCAGAAGTTTTGCCCCAAAA
chr1:245632741-245632759
TTCAGTGGTATCCATTATAAAAAAAGATGG245632741GGGTTATAGGTAGCAGAACTGATTGGCATAGTTGTCAGGCATATAGTAT
chr2:3969371-3969389
AATTCTTTACAAACTTGACAGAGTTAAAAT3969371GGTTTTTAGTTAGAAAAATAATTATGAAATGGGAATATAAAACTTATTA
chr2:4018367-4018385
GGACGAAGTGGGAGTGAAGGGTGAAGACCA4018367GGGTTTTAAAGAGAAAAACTCACACAACTTAGGACAGGCGAAAATGGTG
chr2:4520220-4520238
AGAATATTTTGCTTTACTTTAGTGTGTTCT4520220AGGCTTTAGGAAGAAAAACAGATACTCTATTGCCACTAGCAAGATAGGA
chr2:10054277-10054295
ACTAGATTATTTTTCCTCTAAATTTCAGAG10054277GGCTTTTAAATAGAAAAACAGACTCTTGGGGTAGAAAAGGCACTGTGGA
chr2:13440020-13440038
AAGTACTTACTTACTGAGGTAGAAGAATAG13440020GGGTTTTAGATGGAATAACTAACATATTGATAATGAAAGTAGGATCCTT
chr2:13587542-13587560
TTACCAGTGACTCCTTTCACACTTCTAGAA13587542GGGTTTTAATTAGAATAACCTTTCATAGCATTTTTAGTCTAGTAACTTC
chr2:24913196-24913214
AGATGGAAAAAAGGAAGGAGGGTCATTGGA24913196GAGTTTAAGGTAGGAAAACGTTTGGGAACAGTAAAAAAGCAGCCTTGGC
chr2:28223267-28223285
GATTTTTTTTCATGTTTAGGCTATGGTTAT28223267GGGCTTTTGGTAGAAAGACTTCAGAGGTACAAATCCATTTTCATCACAT
chr2:30373477-30373495
CAACATGCTGAACTGGTTACGGAAAGTTAA30373477GGATTTTAGCTAGAAAATCAGTAAAGAAAAGGGGAATGGGATTAAACTG
chr2:38493116-38493134
ATGTTGTCTCCTGGTTAGACTAGGGTTATA38493116GGGTTTGAGGAAGAAAAGCCAAAGGTGAAGTGCCTGGAAGAGATTTTTT
chr2:38718014-38718032
TGTGTGTGTGTGTGTATGGATCCCTATGTG38718014GGGTTCTGGGTTGAAAAACCTGGCAGGGGAGTTTGATAAACTGTCCTTA
chr2:52843734-52843752
ATTTTTGTTTAAAAAGAAAAACATCTCACT52843734GGGATTTAGGTAAAAAAAATAAGAACACTTGAGGAGGAATTAAAACAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGGTTTTAGGTAGAAAAAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGGTTTTAGGTAGAAAAAC | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.802 | 6.791 | search_plus_done; http://172.18.8.78:28018/match?q=GGGTTTTAGGTAGAAAAAC&k=3&no_gap=1&offset=0&limit=50
6.814 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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