GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 01:02:58, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:16700855-16700873
GTCTGTCCCTGGGACTCTGGAAAAAGGTTG16700855GTTTCACTGTGGCTTCAAAGAAAGGAGGATAATGAGCTTTTCACTAGTA
chr1:32767838-32767856
TTGACACCATAAGTGTTACAATATGTAGGA32767838GGTGAATTGTGGCTTCTAATAATTCTGAGTAGCGATGGTTATTTTTCTG
chr1:54229931-54229949
CAGGAGTTTGATACCAGCCTGGGCAATAGT54229931GGGACATTGTGTCTACAAAAAATAGAGAATATGGCCAGGCGTGGTGGTG
chr1:56427505-56427523
GTCCTACAATGTGAATCCTTATTCTTCACG56427505GAAACATTGTGGCCTCAAACATTTAATCAGTGTTGACATCTGTTTCCAC
chr1:58252372-58252390
TGGAAAACCAGGGTTTAAAAGCCCGTCAGT58252372GGTAGAGTGAGGCTTCAAACCCAGGCAGCCTAACTCTAGAATATAGGCT
chr1:62438486-62438504
CACAGTTAATTAATTTTCAGGAGGTCAACA62438486GGTACAGTGTGGCTTCAGGGGAATTTGCAAAATAGATCTTTTTGACTTC
chr1:71530564-71530582
GTAAATAATGAATGACAGAACATCTATTTT71530564GGGACATTATGGCTTAAAATGCTATTTACTTTTAACTTCACAAATAAAC
chr1:81664773-81664791
CAGCACACCCCAGTACAGGGATGAGCAAAT81664773GGCACAGTGAGGCTTCAAATTCAAGCAGTCTGTCATTTGAGTCCCTAAC
chr1:85706343-85706361
AGTTCTCTTTTCACCTCCAAATTTGTCTTT85706343AGTACATTGTGGCCACAAATTCCTTTGGCAGAAGGTAAAATAAGTAGGT
chr1:97250162-97250180
GTGTTAGGATAATTTGGTTTGAAGCAACTT97250162TGTACAATGTGGCATCAAATAGCAGTTACCTTCTAAAACTGTACTGAAT
chr1:100434547-100434565
AACGAGGCATGCTGTTATCATCATCTAACA100434547GGCACATTTTGGTTTCAAAAAAAACTGGGCATGTATTAAGATCTAATAT
chr1:100739135-100739153
TAATACATTGCATCTCTTGTAAGAAGTAAT100739135TGTACTTTGTGGCTTAAAAATAATGAATAGCAGGAGCATGGGGACTCGA
chr1:115827323-115827341
TTCTGTCTTAATATAAGTGCTCTGTCTGGG115827323GGAATATTGTGGCTTCAAGGAAAATACAAAATGAAAGTTGCAGGGGAAG
chr1:150294821-150294839
GTAAATATGGCAGTACTCATTTTGTAAGAT150294821GGTAAACTGTGGCTCCAAAGAATTACTTAACTTGCCCAAGGGCTTGTAA
chr1:155332410-155332428
AGCTGATAACTTAGGGAATCAAGTTTCAAA155332410TTGACATTGTGGCTTCAAAATCTTAACTACCATGCCATACTGATAACAA
chr1:166707322-166707340
ACTATTTTCTAATTCACTATTTTCATGATT166707322AGTACATTATTGCTTCAAAAACTTACAGTCTTTTGTTTACTAATATATT
chr1:175741025-175741043
ATGAAACACTAATCTAAGTGTGGCTGTGAA175741025GGTACATTGTAGATTGAAATCCATAATTAGTTCACTTTAAGTGAGGGAG
chr1:187179264-187179282
AGTCTTTGCCTCCTGGCCAGTCCTAAACTT187179264ACTACATTGTGCCTTCAAACAATCCTAATAAAACTTCATTCACTAAGGT
chr1:189976959-189976977
TTTTGAAAAGCCATTTATCAAACATTTACT189976959GGTACACTGTTGCTTCAATTCATCTTTGACTCTTCTCTTTTCTTATGCT
chr1:191824321-191824339
ACCTATGTACACATATTGGGTGTTTTCTAT191824321GATACATTGTTGCTTGAAATAATATACGGTTTTATTGGAATATTTTAAG
chr1:194668898-194668916
ATATTATTTTATAATTAAAAACCTTATTTT194668898GGTACATTTTGGTTTCATAACAAATGATATTTTCACTGACTCAGAAAAG
chr1:199228539-199228557
ATTTAGCATTCAAGTCGACAACAAAGACCT199228539GATACATTTTAGCTTCAAAGTTTTGCTCTTAACCACTGTGCTCTACTAT
chr1:200214483-200214501
ACATGAAGGGAGTGAACAAATAGTTTCTGT200214483GGCAAATTGTGTCTTCAAAAGATGGCCATAACGTCTCCCATTCCAGAAG
chr1:215589176-215589194
TCTCCACATATTACTGGCCACAAAGACTAT215589176GCTACACTGTGGCTTCAAACTCTGTATAAGACTCTAAGAGAGCCAACTT
chr1:248179484-248179502
AAGGATAGGAAAAAATCTATGCAATTTAAT248179484GATACATTCTGACTTCAAAAGATAGTAATATGTAATTCACTTGCAACTT
chr1:248392053-248392071
CTTCTTTGATGTCCTTGGGAGTTTGATTGT248392053GGTACATGGTGGGTTCAATGATATGGCTTTGTTTCTGGAAGCTTTTAGG
chr2:6733331-6733349
TTCTTGTGAATTCTGTATGTATGTATAACT6733331GCTTCATTGTGGCCTCAAAAATTATAATAATTCTTTTTTGCCATCTTGT
chr2:19030964-19030982
CAAAATATGCTTGAAATCCCAGCATATGGT19030964TGCACATTGTGGCTTCAAACTCCATGCTCTTAATTCCTAAACTATCCTT
chr2:21579754-21579772
GAGGTTAGGTCATTTGCTCTAGATAACTCA21579754GTTACAATGTGGCTTCAACACAATTACCATTCACAGATGTATAACATCA
chr2:22085731-22085749
TCACATGTAAGTGAAAAATAATGTGTTCAA22085731GGTAACTTGTGGCATCAAATCAGCACTCAAAAAGTTTCAGATTTTGAGG
chr2:22367111-22367129
TTTGGCCAATGGAAGGAATTTACACATTAA22367111GCTCCATTGTGTCTTCAAACTCCTTGTATCAAAGAAAATGCATTTGGGC
chr2:31409924-31409942
CATTAAACAAAATTCCAGATGGGCAAGGCA31409924GGTAAATTGTGACTTTAAATCAGGAGTGTCACTAACATAGGGGGCTCAT
chr2:39738227-39738245
GGGATTACAGGCGTGAGCCACCATGTCTGG39738227CCTACATTGTGGCTTTAAAAGAGTCAGAAACTCAGCTGGAGAAAAGGTT
chr2:58714038-58714056
TGATCAAATTAAGTAACATGACTTGTAGGT58714038GGTGCAGTGTGGCTTGAAATGTTTTTTATGTGGATTCCACAGTGGGGTT
chr2:60872072-60872090
ATTTCCAAATTTAGAAATGCAAAATACCAC60872072GATACCTTGTGGCTTCAAAACCAGACGTTATTCTTAAGAATCACAGAAG
chr2:68486284-68486302
TTGTCAAAATTTTTCTGAGGGAACTTTGAT68486284GGTAGACTGTGGCTTCCAAAGAAAAAATAAGAGTACAAGCTATTTTTGG
chr2:72524824-72524842
ACACTGCTTTAGCTGTGTCCCAGAGATAAT72524824GGTACATTGTGTCTTTAAATGAACTTATTTATTTCTGCCTTAATTTTGT
chr2:79183801-79183819
TAATAAGAAATAAACATTATAAAAACTTGA79183801AGTACATTGTCACTTCAAACATTGTAAAGGTTAAAATACAATTCCCAGA
chr2:103247928-103247946
AGGTCACGCATCTGTGTCAGGAGTTCCCCT103247928GGTTCACTGTGACTTCAAATCCTACTGACATATCTCATTTTGATTTCCT
chr2:105963956-105963974
AGAGTAGGTTGGTAATAACAGCTGAACTGT105963956GTAACATTGTTGCTTCAAATTGAAGTTTATATTATGAACATTCAGAATC
chr2:117371203-117371221
ATGAAAGCAAAAGCTGGAGAGAGTTTAATT117371203GGGAAATTATGGCTTCAAAAGTGTTTGTGAATACTGGACATTTTGGAAA
chr2:121785294-121785312
TTTCATGCCAAAATGTCAGGTTTTGTATCA121785294GGGAGATTCTGGCTTCAAAAAATAAGTTAGAAAATGTTTCCTGTCCCGT
chr2:127738538-127738556
TGTTCTGAGACTGCCTCCTTCCTTTCCAAG127738538GGGACACTGTGGCTTCATATTTATTCTCCGTCATGTACAAAGACAGTTA
chr2:127740686-127740704
GTGTTGGTTTTCTACTGCAGCATAACACCA127740686CGTACTTTGTGGCTTAAAACAACACTGATTCATAACACATTCTGTAGGT
chr2:130970236-130970254
TGTACCTTCTAGTTGAAATAAAGTATTTAT130970236AGTAGATTGTGGCTTCAGATACTGCTTACTGCTTCTTAAACCTTTAAGG
chr2:132730247-132730265
TGGTGGTGGAGGTGAAAGATCAGTTCATAT132730247GATACATTTTGACTTCAAATTTCTCGTCTCTGAGGATTAAGAAGGTACC
chr2:137740886-137740904
TTTGCACAGCAGCTTTACTAATGGTAGCTT137740886GTTACATTGTTGCTTCAACACACACACACACACAGACACACAGACACAC
chr2:138716796-138716814
TTTTGAAAAGTCATGGCAAATGATAGATGT138716796GGTAGATTGTTGCTTCAATTTTCCAAAAAAAAGGGAAAAAAAGATTTTC
chr2:142676884-142676902
TTTCACACACAGTTTGTAAATGATGATATA142676884TGTAAATTTTGGCTTCAAACAGGTCTTAGATTTCACTTCTGATACCACT
chr2:155462277-155462295
ACTATGATGAAAGATGTGTTGCTAGCACCT155462277GGGTCATTGTGACTTCAAAAAGAACATTATTTGAGGAATAATTAACACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGTACATTGTGGCTTCAAA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGTACATTGTGGCTTCAAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.672 | 6.662 | search_plus_done; http://172.18.8.78:28018/match?q=GGTACATTGTGGCTTCAAA&k=3&no_gap=1&offset=0&limit=50
6.684 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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