GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 02:40:19, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:12597372-12597390
CATCTTCCTGGCCTCCAAATGTTGGAGAGC12597372CGCAGCATTCACTGTAAGTCCTCTTCCTTTCTTCAGCCAAACTCTCCTT
chr1:34790172-34790190
CTAGCAGGGGTGTTTTCTTCAACTTCAGAA34790172GGCAGCATAAACTGTGAGTTAAGAACACAGGGACAGGGCTCTGCCATTT
chr1:39804367-39804385
TATTGAAGGTAAATATTCCATACAGAAATC39804367AGTAGGATTAACTGGAAGTTCACATACATACTGAATTTTGAGCTATATC
chr1:41553653-41553671
TGTGTGTGTGTGTGTATTTATTTATGCAAT41553653GGTAGCATTATTTGTAATTGTAAAATACCAGAAACTATATTGATTGTAT
chr1:46205032-46205050
CTCAGGTGATCCTCCCACCTCAGCCTCCCA46205032GGTAGCAGTGACTATAAGTGCATGCCACCGTGCTGGGCTAATTTTTTGC
chr1:61517595-61517613
AGTTGGAATCCTAAAGCACTGCATATTTCT61517595GGTAGCGTTAACTCTAACTGGAATATTGGCGGGCCTGGTCTCTAAGTGC
chr1:66646866-66646884
TCAGACTTGTAAATAATGTACAAGATATTT66646866GGTAGCTTGAACTGTAATTTATTGTCTGTTTCACAGCTAAATGAATGGG
chr1:69918892-69918910
CAGAAGGGGTGTATAGGACAGTTGCTTAAA69918892GGTAGGATTAATTGTAAGTATGATAACATCAAAGTTGTCTTTACCCAAG
chr1:71915175-71915193
AGTTTTTTGATTTGGAAAACAGTCCTTGTT71915175GGTAGTACTAACTTTAAGTTACATTCTGTGAACAATTACATAATGGCAG
chr1:96828200-96828218
TTATGAAGATCCTGAGGGAAGAACATTCCA96828200GGTAGCATTAACAGCAAGGGCACAGGCCTGAAGATCATAATAAGCTTGG
chr1:176032139-176032157
TAGTTGCCTGTGGCAGGAGTTTGAAGGAGG176032139GGTGGAATTAACTGCAAGTGGTGGAAGAGAAAATTTTTGAAAATGTTTT
chr1:176125750-176125768
AAAGTACAAGCATGAAGAAGACTATACCAT176125750GGAAACATTAACTATAAGTAAGATGCTGTGGCTCTATCAGTATCAGACA
chr1:177343415-177343433
CTTAAAACATGACTTTTCCAAAAGTTCCCA177343415GGTAGCATGAGCTGTAAATGACTAACACTCAGCAAGTGCACCATGCTGT
chr1:186291250-186291268
TCTTATATTGTCTTTAACTTCAAAATTCTT186291250GGTAGAAGTAACTGTATGTCATTCACCTCTGTATAATTTTCCCCAACAA
chr1:194990325-194990343
TAAGCAATGAAATAGGAAATAGAGAATAGA194990325GATAGTATTAATTGTAAGTTTTTGTATCTACTTGCAATAAAGAGGGAAG
chr1:197889273-197889291
GAGTCCGAGCTCACCTGCTTTGCCAAGGAC197889273GGTAGCATTTACTGCAAGGAGGATTACTACAGGTACTCCCCTACACCCC
chr1:216694331-216694349
CTATTGGTGAAAAACAGTGGTTTGCCATTT216694331GGTACCATTAATTATAAGTGCTTAATAAAATCATCAGAAGAGATGAGTC
chr1:225063870-225063888
GTAGGCAATAGTGGTAAGTATCCTAATGGA225063870GGTAACATTAAATGGAAGTCAAGAGAGGCTTCAGTGAGCTAAGTCTTGA
chr1:229876827-229876845
AACAACAAACAATTTAAAGGAAAAAAGAGA229876827TGGAGCATAAACTGTAAGTTAAAAGCGATTTAGGAGATATAATAAATAA
chr1:244238797-244238815
CAGGAATTTGGCTGGGACATTAAGGAGTTG244238797GCTGGCACTAACTGTAAGTGCCTACCACTTCCTACCCTCCTGGGGGAGG
chr2:8367487-8367505
ATTTTAATCTTAGTTGCTTTGACATCATAA8367487GGTAGCATTAATTGTGATTGCCACAAGCCCAACTGAGATGCAAAGAGGT
chr2:22367726-22367744
GAATAGCAGCTCATCACACTGTAGGGATAG22367726GGTAGCCTTAATTGTAAATGTAAATAAAGTCCACTATATTATGGAAGAG
chr2:32033695-32033713
AGAGGGAAAGTAAGCACTCTCACTATTAAA32033695TGTAGCATTAACTGTAGGTCTTTCATAGATGCCCTTTGACAAATTGGAA
chr2:37506550-37506568
TACCAGTTAAAGCTGCCTGTGTGAAAAACA37506550GGTTGCTTTAACTGAAAGTTCAATACTGACACCTTGCAGTGGCTGTTCC
chr2:41769204-41769222
AGGGCCAGCATTTTTTAAGTAATCATTTTT41769204ACTAGCATTAAATGTAAGTTCCATGTTGAAACTTTTAAAATTCAGAATC
chr2:56432550-56432568
TGGAGTAAGGCTCTTCAGAGAAATGGAGAA56432550GGTAGCATTAACTGAAGGGAAGGGCAAAATCTATGGCAATTTCATTATA
chr2:63374551-63374569
TTTAGGAGCATTAATCAATTGAATTTGATT63374551GGTTGGATTAATTGTAAGTGGGTTATAGAGAATCAAGAACGACAGAGAC
chr2:66571630-66571648
TCTTCTCTTTCCTAAGGATATCGAGTGACT66571630GGTATCATTAGCTCTAAGTGTTTCCAGAGGAGTGGAGCTCTAGTCTGGG
chr2:71153519-71153537
GAACCCTCTGCCCACCTTTGTCAGCCCAAG71153519GGTAGCATACACTGAAAGTTCTTCTCATGTCAGAGAACATGGACAGCCC
chr2:82684334-82684352
AGAAGACTGACAGATAAACAAATATATAAT82684334GGTAGCATGAACTCTAATTAAAGTTTATAGCAGACAGACAAGAGATACA
chr2:83332984-83333002
CCATTTTTTTTCCAAATATTTATTTATGTT83332984GGTAGCATCCACTTTAAGTCCCAGAAAAACTGAGAGAAATTTGTGATAA
chr2:117139282-117139300
GGAGAAAGTGTCTAGTTTCTAATCACTAAG117139282TGTAACATTAACTGTAGGTTTTCTGAAGGTGTTCTTTATCAAGTTAAGA
chr2:121335180-121335198
AGGTTTCGTCCTGTTTTTGAGGAAGCTGAA121335180GGTAGCATTAACAGGAAGGCTGGCTTTCCAAGCACTGCAGAGCTGAAAA
chr2:135865252-135865270
CTAAGGTAATATATGTGAGAGTTGTAGAAT135865252GGTAGCATTCAAAGTAAGTGGTATGGCTGGGTGCGGTGGCTCACGCCTG
chr2:144484737-144484755
AGGATGAGGTGAGAATATTGATAGGGTAGA144484737GGTAGCATCAACTGCAATTAGAGGACATGTCATTTCCACTGGGTAAAAT
chr2:150945231-150945249
ATATGTTACTCAAAGTTTGGTTTCCTGCAG150945231GGCAGCATCAACTGGAAGTGTGTAAGCAATGCAGACACCCAGTTCCCAC
chr2:154923805-154923823
AATGGTGGGATTACATCCTTACTTATCAAT154923805GGTAACATTAAATGTAAATGGACTAAACTCTCCAATCAAAAGGCATAGA
chr2:156178968-156178986
AAATCTGTTGTTTACGATACCCATAAAGTA156178968AGTATCATTAACTGGAAGTTGAGGTGAATGGGCTATACACAGACCAGTA
chr2:161243923-161243941
GCTTTTAATCACTAAATGTTTTTTCCTAAA161243923GGTAGCATTAACTGGCAGGTTTTAGGGATGGTGCCTGAACAAGCAGAGG
chr2:170417951-170417969
CAAAGACAATCATAGTACTGGATTATGAAG170417951GTTAGCATTGACAGTAAGTAATCTTATGTTAAAAACAAAACAAACCCTC
chr2:172579883-172579901
CCTACTAGTAAACACTTGATTAGGATAACT172579883GGTAGCATTAGCAGAAAGTGGAAAATATATGTATATTCTTACAGTGAAT
chr2:192305107-192305125
CATTGCAGTTAAAAGACTTTAGTTAGTCAT192305107GGTAGCAGTGACTGTAAATTGAATCTATCAAGTTCAAACTCTATCTTCT
chr2:207538353-207538371
AGTTGGCAAGTTAAGGCCCTCTGGGCAGAA207538353GGAAGCCTTATCTGTAAGTTATAATCAGAAGTCTTGGGCAGAGACTTCA
chr2:211711443-211711461
TTTGTATAGATCTTTAATTGCATTTCTTTT211711443GGTAGCAGTAACTGTAATTAGGTAAAATATACAAATACAGAAATATATG
chr3:6924096-6924114
AGGCATAAAGAAAAAGTATAAGCCAGGCAT6924096GGTAGCATTAGCTTTTAGTCCCAGCTACTCCAGAGCCTAAGGCTGCATG
chr3:20510680-20510698
AGACCAGCAACTTCCAAGCTCCTTACATCT20510680GGGAGCATAAACTGGAAGTATAGGAGTACTATTTTTGAAAATATTGAGC
chr3:29983084-29983102
TTTGAAGGGAGTCTTATAAACAATAAATGA29983084GCTGGCATTAAGTGTAAGTCTAGTAGTACGAGTGTGTATTTGTAAATAT
chr3:45500556-45500574
CCTCATCACTCACTTAGCTGGTGATGGGCT45500556GGTATCTTCAACTGTAAGTCAAGTATAGCACCTAGAGGTCATTGTAGGC
chr3:47131214-47131232
GATTAAATTAATTCATATGAAACCAAACAA47131214GGAAGCATTAACTGCAAATGTTACATAGAACTAAGAGGCCTACATAAGG
chr3:53884880-53884898
AATAAAAGTCAGGGTAGTGGTTCCTGCTGG53884880GGTAGGAATAACTGTAAGGAAGTATGAGGAGCACACCTGAGGGAGTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGTAGCATTAACTGTAAGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGTAGCATTAACTGTAAGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.251 | 6.241 | search_plus_done; http://172.18.8.78:28018/match?q=GGTAGCATTAACTGTAAGT&k=3&no_gap=1&offset=0&limit=50
6.263 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).