GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-01 13:16:04, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:11882256-11882274
ATTTGTTAAAGCTACAGTTGTGAGGGTATG11882256GGTATTCGTTACTTTTTGTAATGTTTGAAGTATTTCCTAATGTCAAAGG
chr1:12255534-12255552
TCTCTTGTTTGTGGCCTCATGTCATAAGAT12255534GGTAATCATCACTTCATATGTCACCTCTAAGTTTGAGGTGGGAAGAAGG
chr1:22386856-22386874
CTCAAAAAATTAAAAAAAAAAAAGATTATT22386856GCAATTCATTACTCCATGTGGAAGGAGGAGAGGTGTCTGAGAACAGATC
chr1:34790723-34790741
TTTCGGTGTCCTCATATGAAAAATAGAAAT34790723GGTATTGATTACCTCATGGTGGCTGTGAACATTCGACGAGATGATGAAT
chr1:42648000-42648018
ACATACCTCATTACAATTCAAAAGTATTTT42648000TGTATCCATTACTTCATCTGACCCTCCCACTAAGCCCCAAAGGAGGGTA
chr1:45536755-45536773
AATGCATAATAATCACAACATGGAAAATGG45536755GGTATCCATTACCTCAAGTATTTATTCTTTGTGTTACAATCCAATTATA
chr1:46916967-46916985
TGCTGAGCATCTCCTCTATGCCAGTCACTT46916967TGCATTCATGACTTCATGTGATCGTCACACAATCCTAGACCCAGGCATT
chr1:49075397-49075415
TTACAGACATGAGCCACCATGCTTGGTTGC49075397CATTTTCATTACTTCATGTTTATTTCATGATCTTCTCCATACCTAAAAT
chr1:50960723-50960741
TGGGAGATATTTTGATAGAGGCATGCAATG50960723GGTATTAATTACTTCATGGAAAGTGGGGTGTCCGTCCCCTCAAGCACTT
chr1:61746090-61746108
AGTAACAGACTTGATTCTTCAAATAAAATG61746090GGAATTCATTACTTCACATATATGTATGTGTGTGTATATATATATGTAT
chr1:62329327-62329345
TAGTGAAATATAAATTAATTTTTAAAATAC62329327TGTATTCATTCCTTCATATTTATTTTCAACACAGATGAAAAATAAGATT
chr1:63849310-63849328
AATGTGTAATAATCACATTAGGGTAAATGA63849310GGTATTCATTACCTCAAGCATTTATTCTTTGTATTATAAACATTCCATT
chr1:66839326-66839344
CGCTAACACCTCCATTCCTGTTTATAACCG66839326TGTATTTATTACTTAATGTATATAATGTAATGTTTTGTAAGTTATTAAT
chr1:67108457-67108475
GAAAAAAAATAATTTCTTGATCACTGTTAG67108457GATAATAATTACTTCATGTGCACTTGTGTTTTATAGAACTCACCTGAGC
chr1:67224467-67224485
GCCAGTAAAAGTGACCAAAATGGAAATGAT67224467TGCATTCATTACTTCATTTCAACAGTAATGAATTTATTCTATCATTCAA
chr1:71041263-71041281
AAGTAAAGATGCAGTAAAGGCAAATTGTTT71041263GGTATTCATTATTTCATATCAAATACTTGTAGTAAAACAAAAAAACTGA
chr1:72248180-72248198
TAGTTTTCTTTGCAATCCATAATTATCATT72248180GGTATTTATTTCTTCATTTGTTTATTATCTGTATCTCTTCATAGAATCT
chr1:76303713-76303731
TTTGAAAACATAAATCTGAGACTATCACTC76303713TGTATTCATTTCTTAATGTTGATATAAAACATCACCACAAATTTAGGGG
chr1:78793676-78793694
GCGTGGTGATGGATGTGTTAATTTGACTGT78793676GGTAATCATTACATGATGTATATGTATATCAAATAATCATGATGTACAT
chr1:80764892-80764910
TCAAAAGTCAAAGTCAAAAAGAATGCAGCA80764892GGTATTCATTCATTCATTTATTAATTTTACTAAAAATTGATCATATTCT
chr1:88245207-88245225
TCTAGAGAGTATCATCATTAAGAGAAAATG88245207GGGATTCATTATTTTATGTAAAAATCTCCCAACTTAAAAAATATTTGCT
chr1:94413707-94413725
TCAGTTTTCCCAGCACAATTTATTGAAGAG94413707GGTATCCATTCCTTAATGTGTGGTCTTGGTGCTTTGTGAAAAATTCATT
chr1:95004753-95004771
GAAATCTGAATTGACAAGTTTGACCAGAAC95004753TGTAATCATTATTTCATGTTATGAAATTCCTTCATCTTTCTCTCCCCCC
chr1:96640911-96640929
GACTAGAAACGTAATGATTCATCTTCATTA96640911TGTATTCATTACTTCAAGCTCAAATGTGAAGATTTGGAGAATAATAGAG
chr1:98331002-98331020
GACCTAAAATCCATGATTTATTCAATACTG98331002GGTATTCATTCATTTATGTGATGGAAAAGTTACCATAGACTTTCCATCT
chr1:102619606-102619624
TTTTACTGAATGTCTTTTCTTTTTATTCTT102619606GGTATTCTTTACTACATGTTCGCTGAACTTGCTGTTTTTTAAAAAACAC
chr1:106231072-106231090
ATTACAGGCGTGAGCCACTGAGCCCAGCCT106231072GTTATTCATTATTTTATGTCGTTAAGAAAATAAAAGTATAAATTAAAAA
chr1:142602499-142602517
GTCTAATTTTGTACTCTTGGCTTTTAAATA142602499TGTCTTAATTACTTCATGTAACCAGGAAACTTCCATGCTATCATTGTGA
chr1:149406661-149406679
GAGAGAATTCTGTACTTTGTAATTAGAGGG149406661GTAATTCATTAATTCATGTCAGGGGCATATTATTTTATTTTTCCAAATG
chr1:149791372-149791390
GAGAGAATTCTGTACTTTGTAATTAGAGGG149791372GTAATTCATTAATTCATGTCAGGGGCATATTATTTTATTTTTCCAAATG
chr1:156582731-156582749
AGTGGAAAAACACAATTCTCAAACTTTTTT156582731GTTATTCATTAACTCATGTCATCATTTTATTGAACTCATTAATGAGAGA
chr1:158895785-158895803
TAATTGACTTGCATTTATGCCTTCTCTGAT158895785GGTTTTCTTTTCTTCATGTAGATCTGATCTCCTTCACTTTTGAATAATA
chr1:160633118-160633136
GCTCACTCTTACTTCCCTCACTCCCTCACA160633118GGTATTGATTATTTCATGGGCACTCCTCCATAAACTTTTCACACACAAA
chr1:161892141-161892159
CAAACTGTTCTACTAACAGTTCCTTGAATC161892141TGTATTCATTAGTTCATTTAAAAATACTCATTCACTGATTCTCCTTTAT
chr1:168304341-168304359
ACCTAAGAATAAATGTACAAGTGGAAGTAC168304341AGTGTCCATTACTTCATGTATATCATATGTAGCAGAAAAATAGCAACAA
chr1:169983232-169983250
TACTGGACATACTACATCTTCTCTAAACGA169983232GGTTTTCTTTACTTCTTGTCTTGCCTATTACAGCAGGCTACTGATCTCA
chr1:171882485-171882503
GTAGATATGTTTTTCAGATAAAATTATGAT171882485GGTATTGAGTACTTCATATTATAGAGTAGCTGACAGCATCAAAATATGA
chr1:173629629-173629647
AAGGCTCCCAATGTCCCACCCCTGCCTCCT173629629GGTATTCATACCTTCGTGTAATTTCCTTACCTTGAATGTGGGCTGGACC
chr1:182588418-182588436
CCAGGCCACTTCTGCTTTAATAATCCAGAA182588418GCTATTTATTCCTTCATGTCCCAGCCCCAGGAGAATCTCTTTCCAGTGG
chr1:186508896-186508914
ATTACAAATAATGATTAGTGATGTTTTGCA186508896GGTATTCAATAATGCATGTGAATGGTCATTACATAGAGTTAAGTAAGTA
chr1:189541480-189541498
GTAACTCCAATCTCTGCCTCCTTGTAACAT189541480GGTATTCTTTGCTTTATGTGACTGTGTATTCATGTAGCCTTCTTACAAA
chr1:191913101-191913119
AGATAACTGGATTATCAAACAACTAAGGAT191913101TGTATTCATTACTTCTTTTCAAAATGTGTCAATTTCTTTCAGTTAATTA
chr1:194833616-194833634
ATCTGCCTAGTATTTTAGATATTATCCAGT194833616TGTATTCATTACATCATGAAATAAATAAATAAATATATATATATATATA
chr1:196289395-196289413
CTGCTTAATCTATTGTATTCATTTCACAAA196289395GTTATTAATTCCTTCATGTATCTATTCACTCAGCATATATGTATCCAAA
chr1:214342823-214342841
TGAGGGTCTGAGAAGGGCTTAAATGTTTTA214342823GTTATGCATTACTTCATTTAATTAGAAAAAGCCTATGCCAGATTTGCTT
chr1:214665457-214665475
ATTTTGGGATGAGATTTTATTTTAAAATAT214665457GATATTCATTAATTCATTTAATGAAGACACATTTACTAAAGGAACCTAT
chr1:215705266-215705284
TTCCAGGTCATCTGTGATTATAAATGATGG215705266GTTATTCATTAATTCATTTGATCATTTATTCAGAAAACATTATATTGAA
chr1:219541470-219541488
AAATCTATCTCATTTGTCTTTGACAAGGAA219541470GGTATTCTTTATTTCAGGTAGCATTTTAATACTAAGGTAGAGTGACTTG
chr1:221135581-221135599
AGATGTCTGACTTAACTAAAATTAGTGCAA221135581TGTAATCATGACTTCATGTTGCCCAATATAATCTGTCTTGTGAAGAGAG
chr1:231461441-231461459
AAGAGTAAGTCTTATTTTTAAGACACCACG231461441TGTATTTATTATTTCATGTTTTTAAAGGGTGATATATTCAAGCATTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGTATTCATTACTTCATGT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGTATTCATTACTTCATGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.442 | 6.432 | search_plus_done; http://172.18.8.78:28018/match?q=GGTATTCATTACTTCATGT&k=3&no_gap=1&offset=0&limit=50
6.454 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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