GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 11:26:24, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:6327685-6327703
CTTACAATAAACAATGCACACTGGGATGAA6327685GGTTCTGAAACGTCTCAAATCTGTTTAACTTTCGCCTTTCTCAAACTGA
chr1:20748803-20748821
CCATGGGGAGAGACAGACCATGAAACAGAG20748803AGTTCTGAAGCTTGTCTAAAAGAACTGACTTCATTTGCAACAGCATGTG
chr1:36936186-36936204
TACTAATGAGAAAACTGAGAGACACAGAGA36936186GGTTAAGAAACTTGTCTAAGATCACACAGCTAGTAAGTGGGAATATTAG
chr1:48478381-48478399
ATCCATAGGCATGGTTTATCTCTGTTTAGA48478381TTTTCTGAAACTTCTCTCAGCAATATTTTGAGTTATTCAGTGTACATAT
chr1:49257128-49257146
CTACCCTCCATTCCCCCATCCCCATCAAGG49257128GGTTCTGTTAATTCTCTAACACTTGAGCCAAAGAATGAGCCCAACCCAT
chr1:54020845-54020863
TACCTGTAAAGCAACCTATCAGGCCACTCT54020845GGTTCTGGAAATTCTCTTATACCTTGTTTGTGGCTCTGAAGGCTGCTGA
chr1:57635231-57635249
AGATTCTTTGCTTAGCCATGCTTTCATCAG57635231GCCTCTGAAACTTCTCTTAGACCCTTCTGTGTACTTCCTCATAACATCC
chr1:60329540-60329558
CATGGCGGCATCTCATATGTGCATATATAC60329540GGTATTGTAACTTCTCTAATACAAATATTATTTTAAGCCATACTAGAGA
chr1:60575429-60575447
AGACTTCCATCCATATCTGACAGGCCCGAG60575429GGGCCTGCAACTTCTCTAATGATGCCTTTAAATGATTTTAATGTTGTGA
chr1:65303485-65303503
TCTTGAAGATAAATATCAATCAATTCCAAA65303485TGTTCTAAACCTTCTCTAACCTTGAGTCAGGCCAGAGGAATGAGACACA
chr1:68655824-68655842
ATTTTACAAGGGAGGAAACTGGCTAAGAGC68655824GGTTCTGTAACTTCCCCAATACTGCAGAGCTTTTAAAAAGTGGCACAAG
chr1:75117521-75117539
GACTGATAAATTATCCCCTTCCTTAATTCA75117521GGCTCTGTAACTTCTTTAATATTTAGATCCTAATAACAATTGCTTAGCC
chr1:76422096-76422114
CAAAGTCCTTTCAGCTTCCTCTCAGTTCTT76422096GGTTCTGAAACTTCTCCCACACTTCAGGTTTTTATTACAGCATAGTACC
chr1:80732742-80732760
ATGAGAGCATAGTAGCCTAGTAATTCATTA80732742GGTTATAAAACTTCTGTAACCTAGTTGGGAAACACAAGTAAATAATAGT
chr1:85806221-85806239
TTTTCTCCCTTTAAAGTCCATCAGTCACGA85806221TGTTCTGTTACTTCTCTAAGTGGGCCTCACTTTCTGCACTGCCCTTTCC
chr1:91040880-91040898
GGAGGGGGAAGGGATTGTCATGTGCATGAG91040880GGTTTTCAAACTTCTCTATGATGCAAAGAAGCCAGGGGGTATATGTGTG
chr1:95882459-95882477
AGCAAGAACATTTGATAAAACAGGACTGTG95882459AGTTCAGAAACTTCTCTACTTACAAACAACAGAGAATTTTAGGAACTTT
chr1:96852230-96852248
AGTCTCTATACCTACCACTCAATTTTCTGT96852230GACCCTGAAACTTCTCTAAAAATAGTCTATTAAAAATGCATGGAATGTA
chr1:98057250-98057268
TCCCCTTCCAACCCTCAAGAAGTCACCTTT98057250GGTAATGAAACTTTTCTAACATTGGAATCAGAAGGATAAGACTTAATAT
chr1:98186627-98186645
TGTGGTTAAATAACATTACTTAGTTTCAGG98186627GTTTTTGAAAATTCTCTAACATTATTACTCAAAGAATACAATGAAATAT
chr1:101839049-101839067
AGGGAGAAGACAGCTAAGTGACCTTGAGCA101839049GGTTCTTTAACATCTCTAAGCTTGAGAATCTTTATTATAAAATAGAAAT
chr1:101914510-101914528
CAATTTTTTCATTGCAATCTGTGCATTCCA101914510GCTTTTAAAACTTCTCTAAACTGGGAGAAACAGCAAACTCATTTGGGGC
chr1:107215015-107215033
ATGTCTGCACATTTCTCTCAATTTCACTGT107215015GAATCTAAAACTTCTCTAATAAAATAAAGTCTGATATGGTTTGACTCTC
chr1:121114335-121114353
ACATTTCCCCTGGGGGCCAAAATAGCCCCA121114335GGTTGAGACACTTCTCTAACTCAGGTTCATACATGGAACCAGTTTCTCT
chr1:144282599-144282617
CTTTCTGTACTTCCTGCTCAATTTTGCTGT144282599GAATCTGAAACTACTCTAAAAAATAAGGTCTATTTTCTTAAAGGTCATT
chr1:144462842-144462860
CTTTCTGTACTTCCTGCTCAATTTTGCTGT144462842GAATCTGAAACTACTCTAAAAAATAAGGTCTATTTTCTTAAAGGTCATT
chr1:157459539-157459557
TGCCAAATATTAGCTGTTTGATCCTAATCA157459539AGTTATGTAACTTCTCTAAGCATCAGTTTCCTCATGTGTAAAATGGAGA
chr1:163222412-163222430
CAATTCTCTCAGAGTTCTACTTTCTACTAA163222412GGATCAGAAACTTCTCTAAGAACAAAATTTATGGCAATGAATGCTATAA
chr1:165029237-165029255
GTAACAGAAGAGGCAACTGAGGCATGGAGA165029237GGTTCGGTAACTTCCCTAAGGTCCTGTAGCCAGTAAATGGCTGAGGTGG
chr1:165356039-165356057
GTTTGCTCTGTATAGGTTGATGAGTATTGA165356039GTTTCTTAAACTTCTCAAAAGGCCCACCCACCTAATGCTGAGCATCAGG
chr1:165506663-165506681
TTTGCATTTGGAGAAGGTGCAACTTAGAGA165506663GGTTATGAAACTTTCCTAAGGTTCCACAGCTATTAAGTGAGAGCAGGAA
chr1:173471743-173471761
TTCCTTTTCAACTCTAGGCGTGACTTCCAG173471743CCTTCTCAAACTTCTCTAAATTTGTCCTGGTTACTGAGGAAAGAAGGAA
chr1:177910327-177910345
TTCAAGGATTTATTCCATAAACAAGTTTTA177910327GTTACTGAAACTTTTCTAATAATTCATTCTGGATCCCTGAGCTCCTTGC
chr1:181460774-181460792
AGCTTATGCTTTGGGTTTGGATAGTGAGGA181460774GGCTTTGAGACTTCTCTAACAAAATGCTGATGACCTTGAGACCAGGGAC
chr1:191235148-191235166
GGATCTTATCTAAACCTTTCATTTGAGCTG191235148GATTCTGACACTGCTCTAATAGGGGAAGGGGAAGAGGGATATGTGTGCT
chr1:192173425-192173443
CATTGTCGTATATCAGACTCAACATATTTT192173425GTTTCTGAAACTTTTATAATGTGGAGGTGTCTCATATTCTCATTTGTAT
chr1:195134316-195134334
ATGAACAATTTGTGAATAATTTTCACGACC195134316AGTTCTGAAACTTCTCAGAAACATATAGAGCAAAAAGCCAGATTCCATA
chr1:198844505-198844523
TATTCTTTGTAATAAATAAAATGCTTACCT198844505GGTTCTTAAACTTCTCAATATTTTTTCTCCCTTCCTCCTCCTTCTCTTC
chr1:200035504-200035522
ACCAGACCATCTAGGGGAAAATCCTGCACA200035504TGTTCTAAAACTTCCCTAAACAGATAGAGCCAGGTGCCAGAGCCAGTTC
chr1:205192138-205192156
AGCTGAGCACAGATCTTGGACCTATTTTTA205192138AGTGCTGTAACTTCTCTAAGCCTATTTCTCATTTGTAAGGTGGTAATAA
chr1:206564564-206564582
ACATTTCCCCTGGGGGCCAAAATAGCCCCA206564564GGTTGAGACACTTCTCTAACTCAGGTTCATACATGGAACCAGTTTCTCT
chr1:209679584-209679602
CAAAGGAGATGAAAGGAATAGAACAGTGAG209679584GGATCTGAAACTTTTCTCACTCCATAGACCTGTGAGTTTTTGCTCATGT
chr1:210737022-210737040
CTCTCAGCATAGGTGTGAAGGAGAGAACTT210737022GGTTTTGATACTTCTCTGATATTTTCCCCTCAGCCCATTGTTATTCTGT
chr1:211186001-211186019
ATGAATACGTGGAGCACAGGGGATGTTTAA211186001GGCACTGAAACTTCTCTATATGATACTGTAATGGTTGATATGCATCATT
chr1:211592449-211592467
CTGCACTTTCTGCTGTGTGTATTTTGCTGT211592449GAATCTAAAACTTCTCTAAAAAGTAAAGTTTATTTAAAAACTAATAGAA
chr1:211630283-211630301
ACAGAGGTACAAGGAGGAGCTGGTACTATT211630283CCTTCTGAAACTTCTCCAATCAATAGAAAAAGAGGGAATCCTCCCTAAC
chr1:219636727-219636745
ATTCAGTTAAAGAAACTCAGAGCTAAAAAG219636727GGTTCTGAGAATTTTCTAAAATCATTCAACTAGTGAGGAACCAGCCTGG
chr1:228706256-228706274
CTAGTTTATTGAGTGTTTTCATCCTGAAGG228706256GGTGCTGAAACTTGTCAAATGCTTTTTAAAAAATATTTTCTGGACCTGG
chr1:241053037-241053055
TTTTTGTTGTTGTTCCAAATCAGCCCACTT241053037GGTTCTGTTACTTATCTAACTAGAGATCAGTCTGATATGACGCATGGTG
chr1:243931202-243931220
TCCCTAATTATATTTACTATTTGCTTACAG243931202GGTTCTGAAACTAATCTCAAACTGTCAAAAGTAATGAAAACGGTAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/GGTTCTGAAACTTCTCTAA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : GGTTCTGAAACTTCTCTAA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.542 | 7.532 | search_plus_done; http://172.18.8.78:28018/match?q=GGTTCTGAAACTTCTCTAA&k=3&no_gap=1&offset=0&limit=50
7.554 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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