GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 07:17:00, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4049330-4049348
CTCCAATGATACATTCTCAGTGTTTCTCTG4049330TCATATGCTGCCATTCACTAAAATAACCTGATTATAATGCATCTTATAG
chr1:20955241-20955259
CTGCAATATAAACAGATATTCATCAGAAAA20955241CCATATACTATCATGTACTCCATAAATATATACACATACTATGTATTCA
chr1:28434513-28434531
CTCATTTGTACCACTCTGCTTGTGTATTAG28434513TCATCTACTGCCATGTAACAAATTCTCCAAAATGTAGGGGCTTAAGACT
chr1:31095888-31095906
TCTTCTGCTGCCTTTTCTTTTCTTTTTGGC31095888TCATTTCCTGCCATATACTGTATTGATCAAGTTTTTATTTCTTTTTATC
chr1:34858307-34858325
AAATCACATCCCTTCCTCTGATCTGCACGT34858307TCATGAACTGCCCTGTACTCACCTCTCCGGCCTCATCTCTTACTTCACT
chr1:43005114-43005132
GAGTTTCTTCTATTATTATAGCATAAATTG43005114CCATATACTGCCATATACTGTGGATTATGAGTCAAGCTATATGTCAAGA
chr1:49388384-49388402
TAATGTGAACATTCATTGCTGTGTGACTTC49388384ACATATACTGTAATGTACTTGAGAACCATTTAAAGTATAAATTCTAGGA
chr1:50616328-50616346
AGTGAGGGTTCTGGATTGTTTTAATGTACC50616328TTATATACTTTCATGTACTGGACTTATAGGAACACTATGGGAATTTGGT
chr1:52013585-52013603
TTTAGAAGTGACATTGTCACCAACCAAAGA52013585TGATAAACTACCATGTACTAAGTAGTGTGATTAATTAAATCCTCAAAAC
chr1:58411617-58411635
GTTAAATCAGTAAAACCTGGTTGGTGAGTA58411617CCACATGCTGCCATGTACTGGATTACATTCTATCATGTATATCTAATCC
chr1:58552336-58552354
TGCCCCATCTCTACCCTACTGCCTCAGCCA58552336TCCTATACTACCATGTTCTCACATACCAGGGAATGGCCCACCACTCCTG
chr1:60386782-60386800
GGTTACCAAGAGTGTACAGTATACATTTAG60386782TCATATACAGCCTTGTATTTTGCCTGGCATATGATAAGCACTTAATAAA
chr1:63780797-63780815
CCTTTTAAATTTCTTCCATGTGTTTGTTAG63780797TCAAATACTTCCATGTAGTCTAAATGTACTATACCTAGACAAAATGTCT
chr1:70014072-70014090
TACATTATGGTGAATTGTATAACTATTTCA70014072TCATATAATGCAATGTAGTAATAATAATAGAAATAAAGTTCACGATAAA
chr1:73521770-73521788
AAGGTTCCTGCTCTCAATATATATAATTTA73521770TCATATCCTTCCATGTACTTCTCTATAGTGCTATTTATCTTTTTTTAAT
chr1:76774134-76774152
TGAAAAATTTGTTGAGCCGAGTGTCATACA76774134TTATAAACTGACATGTACTTACTGTTGTTTAATCTAATTGGTGGTTGTT
chr1:77637969-77637987
GGCCAATCCCAGCAGCCATACTTCAACCAC77637969CCATATACTGCCAAGTGCTCAAACTGTGTTCAAATAAGTAAAATGCCAA
chr1:79990144-79990162
AGTACATTAGAGCTCAAATGACATTATTTT79990144TCATATACAGCCATACACTGGAAAAGAAACAACAGATTGAAGTGAGTGG
chr1:88409759-88409777
CAAGGTTGAGATAATATGCATTAAAACACT88409759TCATAAAGTGCCAAGTACTATGCTTTACAGTAAAGCCAAGTAAGGCTTT
chr1:90925511-90925529
TTATTTCTCAGGCCACTCATTTTCCACTTA90925511TCATATGCTGCCCTGTATTGTCTGTTTGGTAATTTTTTTTTTTTTGTCT
chr1:97662995-97663013
ATGTGAACATAAGAAATCAGATTTTGAAAA97662995TCACATAATGTCATGTACTTTATGGGATTTTCATGATTATTGTAAAATC
chr1:98635570-98635588
TAATAATGAATGCAATATTCACACCAACAT98635570TCATGTATTGACATGTACTTATCTAATCTTTTTGGATACTTATAACATT
chr1:101638180-101638198
ATAAATATGTGTAGCCACTAATCTATTTTA101638180TCATTTACTGCCATGAAATACTTGAGTCGGCCAAACCAACCCCTTCTCT
chr1:118970882-118970900
TATATTTATCTCCATATTTATAGTAAACGT118970882CCTTATACTGCCATTTACTGATTTTTCAATTTTTAAAAGTACCTTCTAC
chr1:159149331-159149349
GGCTAGCCATTATTCATTTCTCCCCTTTCT159149331TCATATACTCCCAAATACTGGCAAGGTAGGATGAAGAACTAGTACTTCT
chr1:166899936-166899954
TTTCCTTTCTGAGCTGGCATTATGGATCAA166899936TCTTATACTGCCTTGTATTACTTACTCATTTTATTTCCACTTACAAGCC
chr1:169899426-169899444
ATCCTAACACTCTTGCTGTTAGAGCGCTTG169899426TCGTGTACTGTCATGTACTTTACAAAGCTTTAAAACAAGGCTTATCAAA
chr1:173787901-173787919
CCAGTCTGTACCACTCATTTTAGCCCCTGT173787901TCATATACTTCCTTGTACCATTTTTCAGTGTGTATTTCTTGTACCCTCA
chr1:175422540-175422558
AAAGTTAGATGTGGAAGGGAAGCAACTGAG175422540TCACAGACTGCCAGGTACTAGATCACAAAGATGAGCCCGGAGAGGGGAG
chr1:181989976-181989994
AGAAGTATAATATCAATGAGAAATCAGAAA181989976TAATATACTGCCATGTTTTATCTTTGATGATTGAATATTTAGCAAGCAC
chr1:203655744-203655762
TGTAGCCTAGGACTCCTAACACTGGCACAA203655744TTTTCTACTGCCATGTACTGCTTCCTTAGATCACAAATATGTGTCCTGG
chr1:208502944-208502962
GACATAGGTCAGGCATTTATTCACCTACCG208502944TCTTGTACTGCCATGCACTAGGGTTGTGAGATGGAGCTTCATTATGTTA
chr1:219732014-219732032
ACTTTATTTCTCTCTGTTGGAACATTGTCA219732014TAATATACTGTCATCTACTAAAAAATTACTGTAATAAATATAAAAATCT
chr1:220032108-220032126
ACGCCATGGTTTTCGGCTGGAGTCCTGCTA220032108TCCTACACTGCCATGTGCTCCTAGGAGCAGAGGCCTTGAGGAGGTCTCC
chr1:229668260-229668278
CACTCAATAAATACAACTTTGATACGCTAC229668260TCACATACTCCCATATACTTCAAGTAATCTCTAGATTACTTATAATACC
chr1:239728123-239728141
AAATTGCACTTGAAGTTTGGAGGGAAAAAA239728123TAATAAAATGCCATGTACTTATTTCCTATTGCAACTCTAACAAAAGACC
chr1:245649296-245649314
TGGCAACCCCGTCCTCCAGCTGCTATTCTT245649296ACATATACTGGCATTTACTTAAGTGAGCCCTCTTTTCAAACAGGACCTG
chr1:246283084-246283102
GAAGTTCTAAGCCCTGCTGCCTCGCCAGTT246283084TCATCTCCTGCCATGTACGACATACACTATTTTTCTTAAGAATTCTATT
chr2:5853633-5853651
ACTATTTAACCCATCATTAATTTTGTATAA5853633TCGTATACTGCCATTTACCATGGATGGTGGTATTTACCACTAGGTGTTT
chr2:6958891-6958909
AAAGCGAACATGTGTCGTTGCAGCAAGTAA6958891GCATGTAGTGCCATGTACTCGCCAAACACGTTGCTGCATCTTCAGTAGA
chr2:7810514-7810532
ATTGCCTCTTCTGATATGAGATAGATATAC7810514TCATATACTGCTATGAATTGCTGCTCATTTATTTTTAGAAGTCAGTTTG
chr2:7970322-7970340
GCTCTCTTTTCTTCTTAAGCTTCTTTCTTC7970322TCATATAATCCCATCTACTCTCAGTTACCATCTAGTCATACCATATGTA
chr2:8170716-8170734
ATTCATTTGCTCACCCATTTAATAACTGGG8170716TCATGTACTTCCATGTACTGAGCATCTCCTATAGGCAGGCGATGTGTTC
chr2:11934130-11934148
CAGGGACAACAGTCAAGTTGGTTATTTTAA11934130TCATAAACTGCCATGAACTCTATTTATGCCATTAGTTGAAAGGGAAAAT
chr2:13479843-13479861
TCAAATTTTTATGAAAGCTATTTCATTCAT13479843TCTTAAATTGCCATGTACTATTTTGTCCTTAACACACAAGGGACCAAAA
chr2:17602192-17602210
CAGGTTCACACCACCATAACTATGTCATCA17602192ACATCTACAGCCATGTACTATGCTTTCTTTCTTATTCCTGCAGATAACT
chr2:26299362-26299380
ACTCTCAATGATCTCCTCCTGATAAGGACA26299362TAAGATACTGCCATGTTCTGGAGAACACCTTATTTTGGAAGGTGCCCCC
chr2:30976298-30976316
GGGTCTGCCGGTCACCTGGCAGCAGCTTTA30976298TCATTTACTGCCATCTCCTTAACCCATTGATCCGATGGTGAGCCCTTTC
chr2:33461322-33461340
CATAATTTTCTATTGTATTTTCATTTAATC33461322TCAGAAACTGTCATGTACTTAGTTTGATGCCAGATCATGTTTTACAGTG
chr2:52971242-52971260
CATTCAAGGTGTTCATTTTTTCTGGATGAT52971242TCATATACAGCCATGAAGTGATATTGATATGTATCCAGTAGAAAGAAGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TCATATACTGCCATGTACT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TCATATACTGCCATGTACT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.356 | 6.345 | search_plus_done; http://172.18.8.78:28018/match?q=TCATATACTGCCATGTACT&k=3&no_gap=1&offset=0&limit=50
6.368 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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