GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 05:39:54, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:14841832-14841850
AGCTAGAAAATGGCATAACTGGGATTCCAA14841832TCCAATCGCTGTAGGAAACAATCACTGAATGCCTGATACTTGCGAGGCA
chr1:22187317-22187335
CCATTAAGCAATGACTGAATGCCAGGCATG22187317TGCTATAGGTGTTGGAAATACAACAATGAATGTGATAAAGTCCCTGGTC
chr1:29862212-29862230
ATGTATATCCTATATATGTATATATGTATA29862212TCCTATATGTGTAAGAAATATCAATGTAGTTCACCATAACACATTTTTA
chr1:50282051-50282069
TGCTCAGACATGATTTAAGCTGGAAAAGGT50282051TCCAAAAGGTCTAGGTAATGGGCATATACAATAATGTAGACCAAGCATA
chr1:50311833-50311851
AGGATTCATACCAAGGAAAAGCCCTATGGG50311833TTCAATAAGTGTGGGAAATCCTTCAACCACAGCTCCTCACTCAGCCAGC
chr1:51919772-51919790
AAAGGGAAAAGATCGTGCTCAGTTTTACGA51919772CCCAATAGGAGGAGGAAATATGTAAACAGTTAATTTTAATACAACGTGA
chr1:72719364-72719382
ATCTACAAGACATTTCCAAGGCAATGCTAA72719364TCAAATAGGTATAAGAAATAAAGTATAGGAAAAACTAATCCAATGATGG
chr1:74353453-74353471
TAATCACATCACTTAAATTTTTATGAGTTT74353453TATAATAGGTGTAGCAAATCCCTAGAGTCAAGGTAGACTCAGATTTAAA
chr1:100207506-100207524
TATACCAAAGCTCTCCTACATGTGTGAATG100207506TCCAATAGGTACAGAAAATGATACAGACTAATTATGGTTTCAATTATAC
chr1:100638953-100638971
TAGACTAGAAGAGAAAGAAAATATGATCAT100638953TCCAATAGATGTAGAAAATTATTAAAATTTAATATCGTGATTAAAAACA
chr1:103533914-103533932
ACTAACAGGAAAAAAAACCCGCATGATCAT103533914TTCAATAGGTGTAGAAAAAGCGTTTTATAAAATTTAGTACATGTTCTTG
chr1:111229658-111229676
AAGGAGAGATTCAATCCCTAAATGTCAATA111229658TCCAAGAGATGTAGGAACTGACTGTTTTGTGGTAATACATATTATTAAT
chr1:113799102-113799120
CCAGACTAAAGCAACCGTATACACGCACAG113799102TCCAACAGCTGGAGGAAATAATTTCAGAACTGGCATCCACTTAGCAAGT
chr1:117664486-117664504
CGCCGCCCTCCAGAGTGACGCCACTAAGCA117664486TCCAATAAGTTTTGGAAATTCCACATCTTCGCCAGTCCACTCACGCGGG
chr1:162265253-162265271
TCTATTTTTGAAGCCAACTTTGATTTATAA162265253TCCCATAGGTTTGGGAAATTTGTTTTTCTTTCTATTTTTCTGCTCATTT
chr1:176999224-176999242
ACAGGTTATGATTCTGTTAATATGAGACTA176999224TCTAAGAGGTATAGGAAATTACATCTTTGTGTTTTTTCTGGCTCTAGAA
chr1:185410321-185410339
ATGGGACAGAATACTGGACATTGGAAAATT185410321TCCAATAGGAATAGGAAAACACCAGTTTATGTTATATAACACCACCATC
chr1:196658620-196658638
ATATCATGAGAATATGCGTAGACCATACTT196658620TCCAGTAGCTGTAGGAAAATATTACTCCTATTACTGTGATGAACATTTT
chr1:196748362-196748380
ATTTCATGAGAATATGCGTAGACCATACTT196748362TCCAGTAGCTGTAGGAAAATATTACTCCTATTACTGTGATGAACATTTT
chr1:196826804-196826822
ATATTATGAAAGTATGTGTAGACCATACTT196826804TCCAGTAGCTGTAGGAAAATCTTACTCCTATTACTGTGATGAATCTTTT
chr1:217961631-217961649
TAATACAGGAGACTATAATTATATCCAAAA217961631TACAATAGGTTTAGGATATTGCAATAGAAATGAGAACCAATTAGTTTCA
chr1:228320281-228320299
GGTCTGAGAATGTGAAGGATTCTTTTTCCT228320281TTCAATTGGTGTAGGAAAAAAAGATTTTGTGTTTCATCAAGATAATTTT
chr1:235828578-235828596
GATTGAAAATACTTGGAAAGCTAAACAGTC235828578TCCAAAAAGTGAAGGAAATATTCTGTGAAACCATCTATAAGAAGTGACT
chr2:1738718-1738736
AAATGGGAGTCAAACCCTGCTACTGCTTTA1738718TCCACTAGGTTTAGGGAATATTCTAGATCCTGTGTTGTCATTTCAACAA
chr2:3777923-3777941
ACCGAGTCCCTTAAGGAGCTCCCTAAACCA3777923TCCAGTAAGTGGAGGAAATTATTTAAAGGGAGATGCAAGTCAGTGCTTT
chr2:21995830-21995848
CTCTAAATTCATGCAAATTCAGTCTTAGAA21995830TGCAATAGGTGTATGAGATCACAGGCTCATATTGAGCCTGTTTTAAAAA
chr2:23114849-23114867
CCCCCTTCTCCCTGGTGGTATCAGATGCTA23114849TCCAATTGATGTAGGATATTTAACAAGGCCTTGGGGAATAAGGAGTTTT
chr2:28671133-28671151
GCTGAAGGAAGTGCCATGAACGCTGGGCTC28671133TCCAATAGGTGGAGAAGATTCAAATTTTGATTTTTGCAACCAGCCTCCT
chr2:52791269-52791287
TGCCTTTAATAGTAAAGGGAATTGCTACCC52791269TCCAAGATATGTAGGAAATAAAATCATTTGTTTGAAACATAAAATGAAA
chr2:52912186-52912204
CCACATTTCTCAAAAGAAGACATACAAATG52912186ACCAATAGGTGTATGAAAAAATGCTCAACATTACTAATCATCAGGGAAA
chr2:56971987-56972005
TAACATTGTGAAGTGGGGATAATCAACCTC56971987TTCAATAGGTGAAGGAAGTGAGGCCTACAGAGAAGTAATTTGCCCAAGG
chr2:66866520-66866538
AAAAAAAAAAAAAAAAGAAGGTATTTATGC66866520TAAAATAGGTTTAGGAAATTGGGGGTTAAATGCACATAAACAGGTTTTC
chr2:68222429-68222447
TTCACATATATTGACAAAGGGATGTTTTGC68222429TCAAATAGGTTTGGGAAATCCAAAGTTAAAGAAGTTTATTTTCTAGGGG
chr2:71342737-71342755
AATGTCTTAATTTTCTGAATTGAAAGTAGA71342737TGCAATAGTTGTAAGAAATGCAGAGCAATTTGATTTGGGAAATTAAATC
chr2:80540283-80540301
ATGCCTTTATGTGTGGCCTCCTGTTGCAGA80540283TCTATTAGTTGTAGGAAATCCCTCACCATCCATAAGCAACAGGTCTTCA
chr2:88400157-88400175
CTGCACAACCAGGCAAGACATGGGCTTAAT88400157TCCAATAGGCTTAGGAAAGCAGTCACACACTGAAATGACTTCTTTGGAA
chr2:109694145-109694163
AGTTTTCGAAAGAGGACATACATACAAATG109694145TCCAATAGGTATATGAAAAAGTACCCAACATCACTATCATCAGGGAAAT
chr2:117725448-117725466
TTTCAGAGTACAGCTCATTCCCTGGGTGTC117725448TCCAATATATGTATGAAATATACATGTTAATAAACTTCTATTCGCTTTT
chr2:139322861-139322879
AGATCTAGTCCATGCCCCTTCAGAAAGCAT139322861TCCAAAAAGTGTGGGAAATAATTCATTTACTCCTATGAGGAATGTTACC
chr2:142608272-142608290
TAGTCCTCAAAATTCTCATTCCTGGCACAA142608272TTCAATAGGTGGAGGAAAATAGGTTAACCAGCAAAGCACTAAGAGGCAT
chr2:142750981-142750999
TGCTTGTAATCATCTGCTGCTGCTGGGGGC142750981TCCACTAGGAGCAGGAAATTTTTCCCCTCCACCTTCCAATCTTCTAGCA
chr2:149137403-149137421
AAGAGATTATAATCCAATAAAGGATTACAA149137403TCCAATAGAGGGAGGAAATGAAATAAACACAGTTTCAAACAAATAAATA
chr2:155635146-155635164
CCTTAAGACAATTGAGCACCATGTAAATGG155635146TGCAATAGGTTTAGGAACTGAGATAATTTTTATTTAATTATTATTGATG
chr2:156140008-156140026
AATCCTTAAAATACAGAGCCACAATCCCTC156140008TCTAATAGGTTTGGGAAATCTCTACCTAACAGGAGATAACAAAGTAAGC
chr2:157502828-157502846
AGACTTTTCTTAAAGAAAGACATAAAAAGA157502828GCCAATAGGTATATGAAATATATGCTCAATATCACTAATTGTCAGGAAA
chr2:157880262-157880280
GAATTAGGGTTTGGGAACCTCCACCTAGAT157880262TCCAGAAGATGTAGGAAATGCCTGGATGCCCAGGCAGAAGTTTGCTGCA
chr2:163273722-163273740
TTTGGAAAAAAATATTGTGGATGCTTTGAT163273722TCCATTAGGTTTAAGAAATGCTGAGTTATTCTAGCATTTGAATGAAAAG
chr2:164404643-164404661
GCAACTGAGGTCCCAACCTAGGTGAATAGG164404643TCCAATAGAGGGAGGAAATTTCAGACAGAGACCATGTTTTATTTATCAT
chr2:190898159-190898177
ATAATGATGGTATGAAATTTAAATTGGTTT190898159TCCAATAGGTGCAATAAATGTAACTATATGTCACAATTTTGCCTCATGG
chr2:192561259-192561277
GTGCATTCACCCCGTGGAATACTAAGCAGC192561259TCCAACAGGGGTAGGAAATTTGTATACTTTCATAAAATGATCTTTAGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TCCAATAGGTGTAGGAAAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TCCAATAGGTGTAGGAAAT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
5.728 | 5.718 | search_plus_done; http://172.18.8.78:28018/match?q=TCCAATAGGTGTAGGAAAT&k=3&no_gap=1&offset=0&limit=50
5.739 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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