GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-07 12:09:12, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:57103212-57103230
GAATGCCTCTCACCATTTTCACTGCTACCA57103212TCCTAGTATAAGCTACTATCAGCATTCATCTGGTCTACTTCAATAGTCT
chr1:180195446-180195464
TGCAAACTTTCAATAAATATTAGTTATTAT180195446TACTACCATATGCTACTATGTTGTTATTATTATTATTATTACCATCAAC
chr1:199718166-199718184
CTTTTGCCTTAATATTTTCTTCATCAGTGC199718166TCCTATGATATGTTACTATTACCATGATTATTTCCTGAAGAATGTGGTT
chr1:209778347-209778365
AGTCAGACTTGATCTTTAAGCTCCCCTGGG209778347TCCTAAGATACTCTACCATTTGAGTCTCAAAGCACCCCTAAAGCCCTAC
chr2:215115839-215115857
CTTACCTGGGACATATTTTTTAATGTTCTT215115839TCCTATGATAAGTTACTATGTATATTGTAACATTGTGAATAAATACAAG
chr3:82294118-82294136
TTCTTATAACGTTTAACAAACTTAGTTATC82294118TCCTACGATAAGCTACAAATTTATTGAGGACAGGAACCACATCTTGTTT
chr3:84146954-84146972
AAAGTTTGGTAGAGCTGGTTAAAAATACAA84146954TCCAACTATACGCTAATATACAATATTACAGGTATAAAGTATGTATAAT
chr4:15362645-15362663
TTAAGGATTTTCTCTTCCTCATCTATTATC15362645TTCTATGATAAGCTACTATATTTCTAATAAGGAAAAGCAATTCTATTTA
chr4:59303996-59304014
AGGACTGTGAAAAGATTTTACATGATATTA59303996TACTATGATACCCTACTATAATTTAAAATAGTGGATTTTTTATTTTACT
chr4:88291204-88291222
TAAAACTCTGAAAAGAAATTAAAATTTTTT88291204TCCTAAGATAGGCTACTAGAGCTAGAATAAATTATTTTCTGTGGCTGTA
chr4:153398071-153398089
TGCTCCAAAGCAAAGAAAGGCATTCTTACT153398071TCCTATTATACACTACTATTCAGATTCTGTAAGAAGCTGAGGATTCCGC
chr4:186358177-186358195
AAAGAGTCATATCCTGACCCTTAGCCATAT186358177TCCCACCATACCCTACTATCTGTGCCTGCAAAAGGAATTGTAATACTTT
chr5:23242571-23242589
AAAGAAACAGGAAGCCAAGTGCCCTCTCAT23242571TCCTACGATCAGTTACTATAGGAAGAACCTTTCACTGAGTCAGCTGGTA
chr5:25972856-25972874
CAGCAAAATATGAAAAAGACAGGATAAGCA25972856TGCTACTATATGCTACTATATACTAAAATAAAAAAGCATTTATAAAAAA
chr5:39156697-39156715
TCAAGCTTGGGAGAACATATGCTGAAGTCT39156697TCCTATGTTACACTACTATGTGGCAGTGAAACACTTTGCTTTGCAAAAC
chr5:83903818-83903836
TTGATTCACATGATTATGCTGTCTGAAAAG83903818TCCTATGATATGCTAATATGCCATCTGCAAGCTGGGGAATCAGGGAAGC
chr5:130341146-130341164
AAATCTCAGAAATCACCACTAAAGAACTTA130341146TCCTAAGATAAGATACTATAACTAAAAACCACCTATATGCCCAAAACTT
chr6:5582761-5582779
GAACTGACATTTAGAGAATTTAGACATCTG5582761TCCTACGGTACACAACTATCAGGTGGCCCATACGAAATTGCTTTTTTAG
chr6:66652711-66652729
GCAACCTCTTCCAGCTCATGAGTTAGAAAT66652711TCCTAGGATACGCTAGCATCTTATTCTAGTTTTATATTTGGAAACTGTT
chr6:112096249-112096267
GCTAGCTGTTTACAAACTTAAATGAGCTAT112096249GCCTACGATACCCTAATATGCATCTGCACAAGCAGCCTGCCATCAGAGG
chr6:132411763-132411781
ATAATGAAGTACCTGTTACTATATTTGCTT132411763TCCTACCATAAGCAACTATAAAACTGGACAATATATAGGCAACTGATCT
chr7:142185034-142185052
AGAGATCTACTGTACAGCCTTGTGTCTGTG142185034GACTACGATACTCTACTATATACTTAAAAGCCTGTTAAGAGGATAGATC
chr8:22625028-22625046
ACCACTGCTTTCTGCAACAACACAGGTGAT22625028TCCTACGATAGAATACTATGATTGCATTTACATGACGCTCAAGAATACG
chr8:32768263-32768281
GGGAGAATGAATAAATAAAATAATTTATAT32768263TCATACAATAGGCTACTATGGCAGTTTAAATAATTTGATGCACACACAT
chr8:134543684-134543702
AAATATTAACTAATGTAACTCTTACAATAA134543684TCCTACGAGTAGCTACTATTATCCCACTTTACAGAGGAAGTGAGGTGCA
chr9:31090074-31090092
ATCCTGGTTACTTTTTACCTAATAAATAAT31090074TCCTAAGATATGGTACTATTGCAGGCATCAGTACACAGTTGTTAGCTAG
chr9:110212559-110212577
TGAGATTACAAGAATGAGCCACCGCGCTCG110212559GCCTACGATACGATATTATTAACTATAGTCCTCATGAAGCATATTAGAG
chr10:2528852-2528870
ATACATGAAGAAAATACTGGAAATAGCCTT2528852CCCTATGATACGATACTATTAGCAGTATAGTATTGAAGTGAATTTTGCT
chr10:26979725-26979743
CATGTATTTCCTAATTTAATCCTACACCAA26979725CCCTACGATACTTTACTATTTGTCTTAAAATTTGTTCCTGAGCAAACCA
chr10:61240800-61240818
TAAATGAGTTAAATAAAGGATCCCAAATAA61240800TCCTACTATACAGTACTATGCACCCTCAAATCTCAAAATATAATCAATT
chr10:127910387-127910405
CTCCCCAAAGAATGACAGGGCTGAACCAGG127910387TGCTACGAAACTCTACTATGTTAAAAGAGTAACCAAAGCTGTCACTCAT
chr11:69466862-69466880
AGCAGGGTCGGGAAAGGCCACCTGTCCCAC69466862TCCTACGATACGCTACTATAAAGAGAAGACGAAATAGTGACATAATATA
chr13:98776640-98776658
CTTCCAACTCACTCTAAGTCAAAGCCAAAG98776640TCCTACAATTCCCTACTATCCTGCCACCTTCTCCACTGTGTCCTCAATG
chr13:105953950-105953968
AGTACTGAGTTGTTCTAAATTAATTTGTTT105953950TCCTACAACATGCTACTATATTTAATGCTTGTGACTTTGAGAAACCATA
chr17:13169449-13169467
TCCAAAGTTCTAATTAGTATGACAGTGAAA13169449TCCTACGATTCCCTACTATAGCTAAAAATGGTTTTGCTCTTAAGATCTA
chr17:27170838-27170856
GGGGGTAATTATGTAAAGGCAGCTTTGCCA27170838TCCTAGAATACGCTACTAGCTAGGAGGTGCAATGAAGTCCTGGGGACCT
chr18:19065858-19065876
GACGTGCAAAGGCCAAATTAAAACAGCCTT19065858TCCTAAGATGCCCTACTATTGTTTTATGTGATCATCCAAGATCAATAAA
chr18:33579034-33579052
ATCTTTTCTGACTCTGGCCTCAAGCTAACT33579034TCCTATGATATACTACTATACAAGTTATTTCTGAATTACTACTGGATTG
chr18:62311266-62311284
CAGGCACTTCCGTCCTTTACCCACTGTCCC62311266TCCTAAAATACGCTACTGTCACTCTTCTACTTAAGGAACAGGTGGTGGG
chr20:14482099-14482117
ATCATATTACTAATATGTATACTAGTGTTA14482099TCCTACAATACGTTTCTATTTTTTTTTTTAGCTTCAATAATATAGAAAA
chr20:19853122-19853140
TGCATGTGCGATTGTACCTCGCTCACTTCC19853122TCCTACCATACACTCCTATGCACGTCTTACTGCAACTTTCTGCCTGGCC
chr22:50488522-50488540
CAGACGCACACGCCCTGAGCTGAGACGTGC50488522GCCTCCGATACGCTACCATTGACCCGGGCGCCTTCATCCTCGACATCCG
chrX:36794513-36794531
TAGATTGGATATTTCTTCAAACTCTGCACT36794513TCCTACCATATGCTCCTATTGGCTTGCTGCACCCTCCGTTCATGCATCT
chrY:24427675-24427693
CCCTTCATTTCATGCCCAAAACATGTTTCC24427675TCCTACGATATTCCACTATTTCAGAAATTCACAGCACAAAATACCCTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TCCTACGATACGCTACTAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TCCTACGATACGCTACTAT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
1.437 | 1.426 | search_plus_done; http://172.18.8.78:28018/match?q=TCCTACGATACGCTACTAT&k=3&no_gap=1&offset=0&limit=50
1.448 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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