GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-09 11:10:51, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4440994-4441012
GGAACTCCTCTGAAGCAACTCAAATCTAGC4440994TCTTACTAAATTTAAACATTCCTACAAAGGGGCTTTCACTTCTGGATGC
chr1:5105424-5105442
AGGTCCTCAGACCGACCAGCCCAAGAAACA5105424TCTCACCAAGTTTAAATCCGGTAAGCAGCCTCTTTTTATTCTCTTCTCC
chr1:19328689-19328707
AGTTCTAGTTTGTTGCGGCTCTTTTCCTAT19328689TCTTTCCCAATTTAAACACATCTCCCCTTCCTAGTTGCCTCCTCTGCAC
chr1:29491713-29491731
TTCCCTGTAAAAAAAGGCAGGCACCATGAG29491713TCTTACCAAGTATAGACAGGTATCTGGATACCACAAACAAAAGCCACAC
chr1:33503559-33503577
TAATAGATTTTTTAAAGTTCTATGGTAAAT33503559TCTTAATAAGTTTAAAAACTTAAGTTTAAAACAAGTTTTACCTTTATAT
chr1:34700631-34700649
CTCACTGTCTTTGGCCATGCATTTAACAAT34700631TCTGACCAAGTTCAAACACTCCAAGACAGTGTTCTTTAAAGTGTTGGGC
chr1:35860253-35860271
GATGGCTGAAATGTCACAGACTTTCACTGT35860253TCTTACCAAATTTGAACAGATTGTCTTGAATAAATGTTTCTTCATTTGG
chr1:38603020-38603038
AGTCTGTTGGGATGAACAGGATAGAAGTTT38603020TATCACCAAGTTTCAACACTGCTCTCTGTCTGTACCTGCCTACCTGTGT
chr1:53902797-53902815
TAAACTTCCGTTAACCACTGAAGAGTTTAC53902797TATTACAAAGTTTAAACATTAACATATTCTAAGTTTGTAGTCTAATTTA
chr1:58857938-58857956
CTGAAGTCAGCCAGCACCTCTGCATGTACC58857938TCTCACCACGTTTAACCACAGTGACCTTCAAGATGTAACGGCTCTGCCA
chr1:59649091-59649109
TATACTTCAATAAACAATTTACTTTAAAAA59649091TCTTACCAAGTTTTAAAAAGAAATAAGTGTACCTGAGAGCAGCACATGT
chr1:67769721-67769739
AAGTAAAAGTTTAAAATGATGTTAAAACCG67769721TCTTACCAAGTTTAACGAGTGCCAGCATTCATTTGATGCCCTAAATGAC
chr1:77810399-77810417
TTTTTTTCAACTAGTCTTCATTTCAATCAG77810399TCTCACCAAGTTGGAACACTTTTTTTCTTTTTTTTAATTTATATTTATT
chr1:79455954-79455972
TTTAATTGTACTCTCTAAGTGTGTCATATT79455954TCTATCCAATTTTAAACACTGCTGGAAGAAAAATTTTTTTCATTAGTTA
chr1:80681915-80681933
AAATGAGGACAAATAGAAAACAAATTGTCC80681915TCTTACAAAGTTTTAAAACATATACCCAAATCAGAATTAGTCCCTTGAT
chr1:82440955-82440973
TTCTGTGTGGATAATTGAGTAACTGCATGT82440955ACTTACCAAGTTTAGACAAATGTTTGTGTGCGCAGCTGTAACTCCACCT
chr1:83221541-83221559
AAAAGAAAATATCACTCCGGAGTGTCAACC83221541TTTTGCCAAGTTTAACCACAAGAAGAAATTTCGCAGCTGAGATATTAAC
chr1:85778222-85778240
GGTCTTGGGTCAAAATCACTGATTCACTGA85778222TCTTACCAAGTTTTAATAGATTTTCTTGAATAAATGTTTCTTCATTTGC
chr1:88771992-88772010
TATCCTCCTACCTGTGGTCTCTGCCTCCAG88771992TCTTACCATGTTTATATACAGCTTCCATCTGCCACCAGGATGGTGCATC
chr1:95661221-95661239
ACCCTTCATGTGTCTCTGGATGCACATATA95661221TCTTCCCAACCTTAAACACAGCTCATTGAAATACATTAAAGCTACTGAA
chr1:105090804-105090822
TATAAAATTTGAATTATCCTGGTGGCTGTT105090804TCTTACCAAGTTAAAAAAAAATTCGACATATTTCAAAGTTCAAGAACAG
chr1:108147547-108147565
TGTGTATTTCTAAACAATTATATGACAATT108147547TCTTATCAATTTTAAACATAAGGAAGGAAAACCATCTTCTTCCTGCCAC
chr1:114500993-114501011
CTTTAGGCAGCTCTAGTTGTTTAGTTCTGA114500993TCTTTACAAGTTTAAACTCTGTCTCTGATGAAGAAGGTAACTAAAATTG
chr1:152464322-152464340
AGATGGCTCCAGTGCTACCAAATTAACTGT152464322TCTTACCAAGATTCAACAATGTTTCTTGAATAAATTCTTCTAGAATTTT
chr1:161741942-161741960
TCTCTCATTCTCTTCAGTTCATCACGTCCC161741942TCTTACCCAGTTTAAATACCATGGACAGTCATTGTCACTATTTCCTTCC
chr1:169915682-169915700
CAATAATGATGTAATAGTAGGAGTGTTGGC169915682TCTTACCAAGCTTAAAGGCTTCACTATTAGCTACCTGGTTTTAGGCTAG
chr1:189147180-189147198
ACAGCTGCTTACCTGGAGAATGCTGCATTT189147180TCTTACCAAGTTTAAAAACTATTAGTACCCTAAGTCTTAGAATATCTTC
chr1:189208645-189208663
GCACATTCTTCCTTTCTGGAAAAAGAAATC189208645TCTTAACAAATTTAAAAACCATTTCTAGCTCTAGGCTGTGGACTAGACT
chr1:194267484-194267502
GATGGAATAAAGTCACCCTGCATAGCAGGC194267484TCTTCCCAAGTTTACATACAGAAAGCAGGCTAACATCCATCCCTGTGCT
chr1:214911551-214911569
GAGATATAATTTATTCTATATCTACACAAT214911551TTTTAACAAGTTTAAACAATTATAATTCCAGAGAAAATGAGTATTTAAT
chr1:216208917-216208935
CATCTAGTTTGTGTTACTTTGTTACAATAG216208917TCTTAGCAAGCTAAAACACATAATTGAGCAACAAATATTTGTATATATT
chr1:222019092-222019110
CCAATGCAACACAACTTAGCAAATGCAATT222019092TCTCTCCAAGTATAAACACTCAGAGGGGACAAGGAGGGGATTCAGTTCT
chr1:223171334-223171352
TGGTTATCATTTTAGCTTGTTAAATACTAT223171334TTTTACCAATTATAAACACCTTTGTATTCTAGTCTCAAACTCTATGAAC
chr1:242969331-242969349
CCACCCTATAAATACTGTATCAAGAGGCAT242969331TCTAACCAATTTGAAACACTTGGTTGGGGATTTTTATGTGTGGGTTAGC
chr2:5298667-5298685
TTTTAAAAAATGGACCTTACAGAAAGATGA5298667TTTTACCAAGATTAAACAAATAAATTTCAGAAGAAGAACTATCTCCAAG
chr2:22106828-22106846
GGACAGAGGTAAGGTAAATGCATTTGTTCG22106828ACCTACCAAGTTTAACCACAAGTTTGACCTCAACATTTAGGGTGCAGAG
chr2:22870811-22870829
AATAAAATCTACCACTATATAAATTATAAA22870811TATTACCAAGCTTACACACACTCTATCATAAAATAGAGGTGGAGAAAAA
chr2:23517850-23517868
TATAAAATTCTAACATAGCTCACTTAGAGC23517850TCTTACCTTGTTTCAACACCAAGCAACAAACATGCCCATCCCTGCCCCC
chr2:27650983-27651001
GGATCAAATGAAATAACATCTGTGAAAACC27650983TCTTACAAAGTTTAAGCAAATAGTGCTAAGCAATCACCAAGCGTTAACT
chr2:34988015-34988033
CTTATATGTAAACACTAAATTAAGTTTTCT34988015TCTTACCAAGATTGAACCCTGATGTAGGGAAATAAATTTATGTCTAGAT
chr2:41104561-41104579
TTTTTTAATATCATTGAAAAAAGTGATGGT41104561TCTTACCAAATTTATACATCTTGCAACTAGTCTTCAAACAAAAGCTGGC
chr2:42566342-42566360
TTTTAGTAGTTAATTACTTTTTTTATTAAC42566342CATTATCAAGTTTAAACACAAGGATTTGCCAGGGAGGGCACTCAGGAAA
chr2:46753635-46753653
ACTATCACCACCATCTCCAGAACTTTTTCG46753635TCTTCCCAAATTTAAACTCTGTATCCATTAAACACTAATCCCACATACT
chr2:51467636-51467654
TGGTTTTAGCTATCATTAATTTTTACTGAC51467636TGTTTCTAAGTTTAAACACCTAATTCTGCACATATCAAGAAAGTAAGGC
chr2:55864294-55864312
TATATGAATTCTAGGCCTGAATAACATGGC55864294TCTTACCAAGCTCAAAAACTTTAAGTAGTGGAGAAACAAAGTCTCACCT
chr2:56708234-56708252
CCCTAGCTCAAATGCTGTACCTCCCAGTGT56708234TCTTACCAAGTTTACAAACATTTTATTGAATAAATCCCTCTCAATTTGT
chr2:60534364-60534382
TATGCAATTATTTGGAGGCCAGGTGTGACT60534364TCTTAACAAGGTTAAAAACCCCTGAACAAAAGCAAAGCCAGAGAGAAGG
chr2:61115418-61115436
TATGAACCTAGCAGTTTTATTCACACTCTC61115418TCTTCCCAAAGTTAAACACTTATCATTAACGATGTCATTTTATATCAGT
chr2:63631177-63631195
TTTTAATTTACTTACTCATCACTTTCCTTG63631177ACTTACCTAGTTTAAACAACAGCACACCCAAAGGTCCTCTTTCAAACCT
chr2:64611569-64611587
TTTTAATAGAAAGAGTTTATCTTAACAATA64611569TCTTACCAAGTTCAAGCACCAGCATTCTTTGATAAACACTTGTTATAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TCTTACCAAGTTTAAACAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TCTTACCAAGTTTAAACAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.132 | 6.122 | search_plus_done; http://172.18.8.78:28018/match?q=TCTTACCAAGTTTAAACAC&k=3&no_gap=1&offset=0&limit=50
6.144 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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