GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-06 20:44:16, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:8697536-8697554
AAAAATATAGGGACTACCGACAAACAAATT8697536TTCTAGAACATTGTATTATTTATAAGAGTTAAAGCTGACCAAAATCATA
chr1:18326727-18326745
ACAAAGTTGTGAAACCATTACCACAATCAA18326727TTTTAGAACATTTTATCACTGCAAAAAGAATGCCATTTAGCTATCACTC
chr1:22390181-22390199
GACAAAAAAAGGATTTAACAGTTATGTGCT22390181TTTAATAACATTGTATTACTTTGTTGGTAACCTTCACAACTTTTTTTTT
chr1:24937937-24937955
CAATGTCAACTCTTCTGTTTCTGGTTTCTT24937937TCTTATAACATTGTATTCTTAATATTTATTCCTGTTGTCAATGTAGTTG
chr1:26121891-26121909
CAGAATTGTGCAAGCATCATTATAATCTAA26121891TTTTAGAACATTTTATCACCCCAGAAGAAACTTTGTACCCATTAGCAGT
chr1:28233881-28233899
ACACCTGCCATGTGCCAAGTACTTTAAATA28233881TATTAGAACATTGAATTTCAAAACAAATCTCATTATCCTTGCTTCAGAG
chr1:42857951-42857969
CCCTGGACCCTGATGTAGGTCTGTTGGAGC42857951ACTTAGCACATTGTGTTACAGTCAGTCTCCTCTCCCTCCCCCTGCTCAA
chr1:43903752-43903770
AGCTGGAGGCTCCAGACCCTCTGGGACTTC43903752TCTTAGAACCTCCTATTACTCTGCCCTGGGTCCCTCCTCTAGTTCCTGC
chr1:48543197-48543215
TTATCTTGTTCATCTCTGTGTCTGCAGCAG48543197TCTTAGTACATATTATTACTCCATAAAGGGTAGTTGAATTAATTCATTA
chr1:48878159-48878177
TAGTTTCCATTTTCAATTATTACTATTCAA48878159TTTTAGAACAATGTATTAAAGTGACATTTATGACAATCTTTCTGTATAT
chr1:49608356-49608374
TTAGTATTAAATAATATCCCTGGACAGTAA49608356TCATAAAACTTTGTATTACAGATGCTAGTCCTATAATCTAAGGAATATC
chr1:52454225-52454243
ACACCTGCAGAATAACATCAGTGGCCTCTC52454225TCTTTGTACATTGTTTTACAGTTTACAAAGTTCTTTTCACCCACATTAT
chr1:53171052-53171070
AGCCTCCGCGCCTGGCCCTAATGAGATAAC53171052TTATAGAACATTGTATGACTTACAAAGGCTGGACCTCAGACTACACTTT
chr1:55971480-55971498
CCTCCTCCCTCTTCCCTTTCTCATGTCTGC55971480TTTTAGAACATTTTCTTACATGCAGATTCGTTAATGCATAGGTAAGTTT
chr1:57625352-57625370
CTGCCACCCCCAACACACATATGCATAGTG57625352TCTTAGAACATTGGAAAACCAAGTTTAAATTTCAGTCACAGGGCCCAAA
chr1:58928775-58928793
TTCACTCCTATGTCTCACATACGAAACAAG58928775TCTAAGAACAGTGTATTCCAGCCAAGAAATTAAAAGCTTTGTTCCTTTG
chr1:62773270-62773288
CCTTTCTCCTCCCCTGTAACACATTAACAT62773270TCTGAGAACATTGTAATAACTCCACAGTAAGCTTATGGCAGAGATTTCA
chr1:64638044-64638062
GCTTTTCAAAAATTTCTAAAGAAAGAAGCA64638044TCTTGGAACAATGTATTAACTTCTGCATCAACTTTTATTTCATATAATA
chr1:64688473-64688491
GCTGTTAATATTGTGTGTCTAGTGCCATAT64688473GCTTAGAACTTTGCATTACTTCATGAGCTGGAAGAACTGGCCTGGCTGT
chr1:67329602-67329620
CATGTTCATGAAGAGAACTTAGAAATTACA67329602TCTTTGAACACTGAATTACTCAACTTTCTTTTTCTTTTGTTTAACTGAA
chr1:69397234-69397252
TGCTATAGACAACTATCCCAAAATTTAGTA69397234GCTTAAAACATTTTATTACTATTTTATCTCATGATTCTGTGGGTTGCGA
chr1:70118442-70118460
GCTTCACATCGCTTGATTTCAAAACTACAG70118442TATTAAAACATTATATTACTGCCATAAAGACATATAGACCAATGGAACA
chr1:70843689-70843707
TTTTTGCTACGAAAATGAAAAATTTAAATG70843689TCATACAACATTGTATTAGATTGATTTGCCTTTTTTTTTTTTTTTTTTT
chr1:72247686-72247704
GTGAGTGAATTTTAAAAGATCAAAATTCGA72247686TCTTAAAAAATTGTATCACTGATGACTTTGATGATCTTAAAGCAGAATA
chr1:76654943-76654961
CTTTGTGTGCTCATATTCATGCAAGTAAGT76654943TCTTAGATTATTGTCTTACATAAAGTGATTTGTACCCTTTGCCTATGGT
chr1:77535199-77535217
TACTAATATGTACAATGCTTGTATGAACAT77535199TCTTAGAAAATTCTAGTACGTTTGCAAGAATTTTGTAGAGTGCATACCT
chr1:79129627-79129645
GTGTTTTATTAATGTCTAGGATGAAGAAAT79129627GCATAGAACATTGTAGTACTTGTAAATAACTAGAAATAACATGATTTAG
chr1:89766564-89766582
TGAGTCAATGTCATCATATTTTGCTTTGAT89766564TCTTTGAACAATGTATTAACGTTAATTACTTGGTATCTTTGTTCTTTAG
chr1:92978961-92978979
TAAACAAGAAACATTAATATTCAGTAATAC92978961TGTTAGAACCTTGTTTTACACATTAACCATATACCAGTCTACTTTATGG
chr1:103129008-103129026
AGCATTAGCAAAAGGAACATTTAAGCCATT103129008TCTTAGAATATTGTTTTCCAATAAAGTTGATTTCTTTGAAAACACTTAA
chr1:104126481-104126499
ATAATAAATGTGAAATTCATTTTACTATGT104126481TCTTAGAACTTTGTAATACTAATTTATAATAGCAGTTTCATCCTTTAGA
chr1:111738058-111738076
ATTCAGAGTTCCAGAGGACAGGACTGGAAT111738058TCTTAGAACAGTGTTCTACCTGCTGCCTCAGTGTGCTTGGTGCCTTAAA
chr1:117423248-117423266
ATATAATTCTGTATTATGATTATTTCCTGA117423248TGTTATAACATTGTATTATAAGTGTATTTTCATAAGGTTATTTTCTGAC
chr1:144152706-144152724
TGGTGATATAAGTCCGTATCGCAGCAGCAC144152706TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:144817660-144817678
TGGTGATATAAGTCCGTATCGCAGCAACAC144817660TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:145305638-145305656
TGGTGATATAAGTCCGTATCGCAGCAACAC145305638TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:146413861-146413879
TGGTGATATAAGTCCGTATTGCAGCAACAT146413861TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:148583519-148583537
TGGTGATATAAGTCCGTATTGCAGCAACAC148583519TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:148745606-148745624
TGGTGATATAAGTCCGTATTGCAGCAACAC148745606TCTTAGAAAATTGTTTGACCAATTTTTGGAGATTTTTTTGGGGAAAAAA
chr1:156244581-156244599
GAGATGTAGAGACTAAGAATCCAGGGCCAG156244581TCTTGGAACATTGTCTTTCAGGGCAGAGACACACTCATCCAGGACACAG
chr1:157746538-157746556
TGCTAAATGCTAATATTATGAACATTTTAC157746538TATGAGAACATTATATTACTCAATGAGATCTAAGATATCAAAATAGCAA
chr1:162752695-162752713
TCTGGGATGAGGAAGGCTTCAACTTCTGGC162752695ACTGAGAACTTTGTATTACAGACACAGGTTTAGTTTCTAGCTTAGTCAT
chr1:176820895-176820913
GGACACAACCTCACACCTTTATGTGGTGGC176820895TCTGAAAACACTGTATTACCCATTTTTGGATCTCTGGTACTGCCTTATA
chr1:177820001-177820019
TTTGGAAATACCATGAGCACCATCATGCCC177820001TCTTGAAACATAGTATTACCTTCAGTGAAAGCCTCATGGAGCACAGTTA
chr1:178138464-178138482
AAACCCCAGGGGATCTTTGGCGACACTTCG178138464TATTAGAAGATTGTATTTCAAGGAAGTGTTCATTTATTTTTACATCTCT
chr1:181874015-181874033
TCTGGAAAATGTGAGAAAAAACATCACCAT181874015TCTAAGAAGATTTTATTACATATACGTGAAAGCACTAGGCAAATAGTAA
chr1:188385484-188385502
TTTTGTGCATTATTTTAGCACATTGAAATT188385484TCTTAGAACAGTTTTTTACAGCTTATCACAATCTCATTCCAGCTTCCAA
chr1:190118211-190118229
ATTGTGAATTTAAAGTAAAACTACTACCCA190118211CCTTATAACATTGTATTAAGTTAAAAATGAAAAATGGTAAAGCATTTAG
chr1:190710305-190710323
GCATGCTTCCTGGTAAGACTTAGCTAAGAG190710305TCCTAGAAAATTTTATTACTATTTTTATTATTATGATTGTTAGAGATGA
chr1:192091549-192091567
AGTTTGTTTCTCAAGTCTTTGTTCAGTGAT192091549TGTTAAAACATTGCATTACTGCCTCCCAATTGTCACATTACTGATGATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TCTTAGAACATTGTATTAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TCTTAGAACATTGTATTAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.611 | 6.601 | search_plus_done; http://172.18.8.78:28018/match?q=TCTTAGAACATTGTATTAC&k=3&no_gap=1&offset=0&limit=50
6.623 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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