GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 03:08:40, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5155770-5155788
AGAGAATGAAATACTCTATAGCGAAGACAA5155770TGAACAATCCAAACTTCATCCAACACATGAACGGATCTTACAAACATGA
chr1:7301210-7301228
AAATTCAATTGTATTTCTATATAGTACAAA7301210TGAACAATCCAAAAATAAATTGAGAAAACAATTTCATTCATAATATCTT
chr1:9915127-9915145
AAAATCAATTGTATTTTTATATACTAGCAA9915127TGAACAATCAAAGTAAAATTAAGAAAATGATTCCACTTATAATTGCATT
chr1:14505084-14505102
TTTATTATATTCATGTTTGTTTTACAACCT14505084TGAACAAGCAAAGCATATTTTTAGTAGCTGTCTGAATAGCCATGTTTGC
chr1:19139179-19139197
CAGGGAGACAGCAGTGCATAAATGTGGGGA19139179AGAACAATCCAAGCAGAAGAAAGAGCACATGCAAAGGCCCTGGGGTGGG
chr1:29292988-29293006
GCAACATTCTGGGCAACAGGGATGAAACAA29292988TGAACAAAACAAGCACAATCCTTTGCTCCAATGGAGTTTACATTCTAGT
chr1:31684211-31684229
AAAATCACTTGAATTTCTACACATTGACAA31684211TGAACAATCTAAACATAAAATTAACAAAACAATTTCATTTACAATAGCA
chr1:33980731-33980749
TGAACTTCCCAACAATTCTCATGGAATTCA33980731TGAACGACCCAAGCATGATATAGCTGTCAAAATCAATCAAACCCACTCG
chr1:35432026-35432044
TTTCACCATGCCTTAATTTCCAAGCAGAAT35432026TTGACAATCCAAGCAAAATGATTTTAATTAATTGGAATATTAGACTTTC
chr1:43000937-43000955
TGCCTTACTAACGAATGAATGTAAAAATTT43000937GGAACAATCCAATAATAATATAAACTGCCACTTACAGAGCATTTTCTAT
chr1:51037182-51037200
ATGAAAGGTAGCTGTTAGGATGAAGATTCC51037182TGAACTATCCATGCAAAATAAAGGGTTTTGAAAGCAATTTCAAGAGAAA
chr1:51258229-51258247
AGAGTCCACATTTCATGAGGATGAGATGCC51258229TGAACCTTCCTAGCATAATGCAGAAGAAATATAGATGCTTAAAGAAACA
chr1:53889557-53889575
AATCACTATTATTGCTACATTTTATGCAAA53889557TAATCAGTCCAAGCATAATAAGCTTAATAATAAGACTAAATTTTTTTGG
chr1:63275411-63275429
CAAATGAATATGCAATGAATATGAAAAACT63275411TGAACAACCCAAGAAAAATGAGCCAAGATGGTGAAGAGGTGCTGTTTAA
chr1:63826694-63826712
ATGACTGGTGTGCATCTCCAAGAGCTTCCT63826694GGAACCTTCCAAGCATAATCGATGTGGCTGCTTGATTACTGTAGTAGCT
chr1:64757970-64757988
TGGGTAGGGACACAGAGCCAAACCATATCA64757970TGAACCATAAAAGCATAATTGAAATGAAAGTTATTATATTTTCATAGGT
chr1:65077890-65077908
TGGGTGGGGACACAGAGCCAAAACCTATCA65077890TGAACCATAAAAGCATAATTCAAATGAAAGTTATTATATTATCTTAATA
chr1:66022940-66022958
ATTTCATTTTAACTACTCAGAATTTATAAT66022940TGAACAATACAACCATAAGAAAAGTTAGAACAAATTAATGGTTCATCCT
chr1:66075465-66075483
ATAAATAAGAAAATCCTTGACTTGAAGGAG66075465TTTACAATCCAAGCCTAATTGTGACTATTTCTGAAGGCAGAGAACACAG
chr1:68790650-68790668
CATTCCCTCAAGCACTTATCCTTTGTATTA68790650TGAACAATCCAATTATACTGTTTTAGTTATTTTTAAATGTACAATTAAG
chr1:79123991-79124009
AACCTCAGTATAAAAGCTCTATCAGTACCA79123991TGAACAATCTCATCATAATCACACTTAATATCGTTTCATATAATCACAA
chr1:94159048-94159066
TGACAAACACGCCACATGGAAGGAAATGAG94159048TGAACAATCCTCGCATATTCTGAAGTGAGTCATTGGCCTTTCTTGTGGA
chr1:96348897-96348915
TTCTTCTTACTTGTTTTCAGCATTTTATTA96348897TGAAAAATCCAAGCATACAAAAAAACTTGAAAAAATGTTACAGTGCATA
chr1:97285962-97285980
ATGCATATTCTAGCATATTTAATATATTAG97285962GGAACAATTTAAGCATAATGTGAATTTCATGTTTACTGAAGATTTCATC
chr1:99955302-99955320
GAAGTGTTGCTATTGACCCTTGGCAGTCAA99955302TGTACCATCCATGCATAATTTACACACTAATAATCAAGAGTTGACAGAG
chr1:101201794-101201812
ACAGTTGCTACTTTTTACTCATTATTTAAA101201794TGAACAATCAAAGAATATTAAGCGCTCAGCTAGAAACTCATGCCCCCAA
chr1:102472119-102472137
TCATCTCTTCAGGCATTTCTCCTTGTGTTA102472119TGAACAATCCAATTATACTCTTATCTGTTTATTAATGTGCAATTAAATT
chr1:107860242-107860260
GTCTTCTTGACCCCTCAGCCTTCACCAGTT107860242TGAAAATTCCAACCATAATCCTCTGTGGGGATTTACACAGGTGTCTATT
chr1:119434176-119434194
TACCTTCAGGGAAGGCATGTGACTCAGGCC119434176TGGACAATCAAAGCATCATATTCCCCCCTACCACAGTAATTAAAATGGA
chr1:120609197-120609215
ATATTTTTAAGATGTATTGTAAGGCTGCTC120609197TGAACCATCCAAGCATATCCCACTGAATTTAAACATTCTCTAAAGGTCC
chr1:154425729-154425747
AAATAGAAAAGATGATGAAATGTTAATAAA154425729TGAGCAAGCCAAGCATACTGCTTTCATTACACAGCTGCATCTCTCAAGA
chr1:157561515-157561533
AAAATCTTTGAAGCATTTGTGGATAGAAAC157561515TGAAGAATTCAAGGATAATGCAAATTAAAAATAAGAGGCTTAATTCTCC
chr1:159332132-159332150
ACATGTTTAATCAACAGAATGGCACAAAAA159332132TGAATGATCCAATCATAATTCGACCCCCAAGACAGTGCAGGTTGTAATG
chr1:164973128-164973146
AAAATCTATTGTTTTTCCATACAATGACAG164973128TGAACAATTCAAAAATAATTATAATAGTATCAAAAAGAATAAAATGCAT
chr1:165122650-165122668
CCTGTGCTCACCCGAGCAGAGTCAAGAATG165122650TGAACAATTCAAGCATTCTCCAGCCTAAAAACTCAGCTGCAATGACTGC
chr1:176103452-176103470
AAATGATTTCATGTAAAACTGTTCTTAGTT176103452TGAACATTTCAAGCATAAAAATTCAAAACTCAAGATTCAGATAGCATAT
chr1:186051094-186051112
CTTGAGCAAAATAAATAATATTCTATTGGC186051094TCAAGAATCCAAGCATAACCTTCAGTGTATCCAACATAGGACATATCTC
chr1:191563089-191563107
ATAAGTCATATTATTATACATAACAATGAA191563089TGAACAATGGAATCATAATTGGAACAATCTCATTTATTATTTATAATCT
chr1:197650607-197650625
CTGATCAAATTCTTTTATTCATGTACTTAT197650607TCAACAATCCAATCATAAAGATTAATCACCAACTCTACATAAGGCACTG
chr1:199138157-199138175
TCACCAGAAGAAGTGTATGCTCAGAGGCAA199138157TGATCAATCAAAGAATAATCTTCATTCTGTGAGGATGTGGCTTCAAACA
chr1:210814961-210814979
TGCAAATTTCCATTATGATTGATGCATTAG210814961AGAACAATTCAAGCATAACGCAATTTAGTGTTTGCTTATATGCAATTTT
chr1:211027716-211027734
AGATTAATTCAGCTAGTCCAAGAAAAGGGA211027716TGAATAATCAAAGCCTAATTCCAATGTGGTCAAAAATAAGAAAATAGAG
chr1:222495591-222495609
ATGAAGTATTGCTATACACAACCCCACACA222495591TGAACCTTCCAAACATAATCATAATCATAAGTGAATAAAGCCATGCACA
chr1:229160122-229160140
TCAATTGGCCATTTAGCTCAGTTTGGGCCC229160122TTAACAATACAAGCATGATAAGGTCTCGTCACTGTGTCTCCAGGATCTG
chr1:234268598-234268616
ATTTATAAAGAGCCTTCCCACTCCAAAATA234268598TGAACATTCCACGCAAAATTTCTAGTGGAAGCCAGAAACAGCAGCTAAC
chr1:237604438-237604456
CATTATGGCAAAAATAGTGTTTTACCAATG237604438TGAATAATTCAAGCATAAGTTAGAGGTCGAACTGTTAGAGTAAAATATT
chr1:238933682-238933700
CTATTAGCCTTATATAATTAGCTTTCTTAA238933682TGAACAGTCGAAGCCTAATAAAACATTCATCTGTATTTTTAAAGTGTAC
chr1:242700493-242700511
TGTCCACTAATCCCACCCAACTGAGAGTTT242700493TGAATAATCCAAGCCTAAACTGGGAAACCCAGTCTCAGTCCTATTGTGA
chr2:387655-387673
TACAAAATAGAAAAAAAGATGAAATCACCT387655TGAACAATACAAACATCATAATTCAACCGTCGCGAATATTTCAGTGTAA
chr2:27963783-27963801
GCAGAGTCAACTGAGAAGGCCTAGAAACAA27963783TGATCAATCCAATAATAATGAGCACCTCTGGACCCCAGATTGTGATTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGAACAATCCAAGCATAAT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGAACAATCCAAGCATAAT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
5.856 | 5.845 | search_plus_done; http://172.18.8.78:28018/match?q=TGAACAATCCAAGCATAAT&k=3&no_gap=1&offset=0&limit=50
5.868 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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