GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 20:05:45, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:17502862-17502880
AGAAGCAGCTGAGAAAGACAAACTTTCAGA17502862TGATAACTGCTCTACTCCAGCCAAACACTACAGAAAAAACTGTGACCTT
chr1:24991449-24991467
GATTCCTCACAGCAGTAAAATCAACACTAA24991449TGTTTATTGCTCTACTCCAGGATGTTTTTGTTTTGTTTCTCGTCATTTA
chr1:29203915-29203933
CCGGCTATATCTTGCATTAGCATCCTTGCT29203915TAGTTCCTGCTCTATTCCATTCTGTCCTCCATTGCTCATCCCTGGAAGC
chr1:36927682-36927700
GCCCCCTGCCTCCTCTACTAGGTTTCTTCC36927682TGCTTACTTCTCAATTCCAGGGACATTCTGGTAGTCTTTGAGCAGCGTA
chr1:44981221-44981239
CAGAACCATTTATTTGTCCCAACATTTATA44981221GGATGCCTGCTCTATTCCAGGTATCATGCTGAGTCAAAGCTCTTCAGAC
chr1:50609740-50609758
ATAAGCAGAAGTAATTGCTTCTGTATTGCA50609740TGATCACTGCCCTATACCAGCTGTTTACCTGTCTGTGTCCTCTATAGAC
chr1:50679358-50679376
TACACAACTCTCTCTCTCTGGTTCAAAGTC50679358TGATTATTGCTCTATCCCACTTGACCATTGCCTATGCACTGAGATTTCC
chr1:61702723-61702741
GCTCCTGAAGGGTGGGGACTTTTTGTCTCT61702723TGTTCACTGCTCTATTCCTAGCACCTTGATCACTGCATGGCACATAGGA
chr1:64206080-64206098
CAAGGCCCAGAGCTGGAGACCCCAAGAGCC64206080TGCTTAGTGCTCTACTCCACTATGGCTGAGCTGGTGCCTAAGCTGTAAG
chr1:77052751-77052769
GATGATGCAATGCTTTAACACTGAATGAAA77052751AGATTTCTGCTATATTCCAGACACCAGATATGAAGGCCAGTTTGGGTGG
chr1:83374128-83374146
CCGTTATTTATTATCTATTATTTTCTCTTT83374128TGTTTACTGCTGTATTCCAGCTGTGTAGAATACTACCTGCATATAATAT
chr1:85805928-85805946
TCGGATGCCTACCAGAGCTGCTGTCATATC85805928TGAGTACTGCTCTATTCCTAAAATGTGAATCTAGGTCAGTGAAATCCAG
chr1:90691589-90691607
CCAAGGAGATCATCTTGGACATTTAAGAGT90691589TAATTACTGCTCTATTACATTTTGGACTTCCTTGGGGCCTGGAGCCCTT
chr1:98635321-98635339
AGAAGCTCATCTGGTTTGCAGCTTCAGCTC98635321TGCTCACTCCTCTATTCCATTTTGGGATCTCAGGTGTATTTACCTTAAT
chr1:100882994-100883012
ATATGCTGATTGAATTACAGTCATCTGTGG100882994TGATTTGTGCTCTGTTCCACCTCCTGCTGGCTGCGTTGTATCCCATGTT
chr1:103097862-103097880
CCTGAGACTAAAGACTGGGATATTTTGTTC103097862TCTTTACTGCTGTATTCCAGAGCCTATAAAGCATGTAGAAGGTGCTTAA
chr1:105284117-105284135
TTGATTTGAAAGAATACATTTTCTTAATGC105284117TAATTATTACTCTATTCCACCAGATCGCAATCATCACACAGTATGTATT
chr1:108724004-108724022
ACAGAGTATTTGAGAGCACCTGGGCTGCAG108724004AGATTACTGCTCTATCCCATGAAACAAAACATTAAGAGTATAAAAGTCT
chr1:111197065-111197083
CTGAATCAGAATGGATGCAGTTTCTTGGAT111197065TGATTACTGCTTTATTCAACTGTTCAGAAGTCAGTCCTTATGATGGATT
chr1:114422439-114422457
AAAAGCGGCCATGGACAATATGTAAACAAG114422439TGAATGTTGCTCTATTCCAATAAAACTTTATTTACAAAATAAGACAGCA
chr1:116541556-116541574
TGTAGATGCTTATTGCAGTAAACTCTCCTC116541556TTATTACTGCTGTATTCCATGGATTTTGGTATATTGTATTTCTATTTTC
chr1:119180662-119180680
TGGCACCTGGAAAATCGGATCACTCCCACC119180662TGAATACTGCGCTATTCCAATGGACTTATCAAATGGCACACCAGGAGAT
chr1:146020098-146020116
CCCTTTCTTCTCTATCTCCTATTTTCACTG146020098TGAGTTCTGCTCTGTTCCAGATGTAGCTGACTGGATATTTCCCCTCAGC
chr1:147561878-147561896
CCCTTTCTTCTCTATTTCCTATTTTCACTG147561878TGAGTTCTGCTCTGTTCCAGATGTAGCTGACTGGATATTTCCCCTCAGC
chr1:149063291-149063309
CCCTTTCTTCTCTATCTCCTATTTTCACTC149063291TGAGTTCTGCTCTGTTCCAGATGTAGCTGACTGGATATTTCCCCTCAGC
chr1:151466525-151466543
CTCATGAAGGCAGGGATTGCTGCCTATTGT151466525TGACTTCTGCTATATTCCAAGAGCCTAGAACAGTGCCTGGTACCTGGTA
chr1:153376542-153376560
TTCACAGGACTCAGGGAGGCACTTTACTCA153376542TGATTACTGGTTTATTACAAAGAGTACAACTCAGGAAAAGCCACGTGGA
chr1:157171530-157171548
CTGTTATTATTTCTGCCTTCAGTTTTTCTA157171530TGATTACTGCTCTGTTTCTAGGTAATACTTTTAAGGCTGTTTCTGGAGT
chr1:167581293-167581311
TCCTCCCTTTCACTCCCCCAGGGCTTTGCT167581293TGTTTTCTGCTCTATTCCTGCCCATCTCTCAATGCCCACATACCATATT
chr1:175228609-175228627
TTGCGCTGTGGTCCGAGAGACAGTTTGTTG175228609TGATTTCTGTTCTTTTCCATTTGCTGAGGAGTGTTTTACTTCCAATTAT
chr1:176078785-176078803
TAAATTGGAATCTAATTAAATTAGTAATTA176078785TGGTTACTGGTCTATCCCAATTGTCCTAAAATTAATCTGAACTATTTTA
chr1:176468304-176468322
CCCCTAATAGAGTTGATCATGAATTTTCTA176468304TGATTTCTAGTCTATTCCAATTAGTTCAGGAACATGTATTTTGGGAAAC
chr1:183758802-183758820
GCTTTGGCTAAATGGCTCCTTTACCTCTAC183758802TGATTTCTGCTCTATTTAACCAGGTATATTAATTGGAATATAGGTTTGG
chr1:184159726-184159744
TTTCCTCTAAACAATGAGGTCTTGTATTTC184159726TGATTCCTGCTCAATTCAATGATGGCTTTACAGAGTGCAGTCCATAAAT
chr1:186457961-186457979
TTTCTTGATTTCTACACTCATGTGTTTCAC186457961TGATTACTGAACAATTCCACAAGAATGTCTCACATGCATGACACTTAGG
chr1:186661432-186661450
ATTCCATGAAGGTCAAATTTTTGTCTGCTT186661432TGTTTACTGTTATATTCCAAGCACCTAGAAAAATGACTAGCATATACTA
chr1:190225273-190225291
TTGCACTGTGGTCTGAGAGACAGTTTGTTG190225273TGATTTCTGTTCTTTTCCATTTGCTGAGGAGTTCTTTACTTCCAACTCT
chr1:192133536-192133554
ATATCCATGAGACCAAAACAGAAAGGTCAC192133536TGATTTTTGCTCTATTCCACAGAAATCAAATGATTCAGGGAGGTGTTCT
chr1:192162824-192162842
ATATTAAGAGCTAATTGTAACAGCTACATT192162824TCATTTCTGCTCTATTCCAACTTTTTAAACATTAGTATTTCATTTTAAT
chr1:199960218-199960236
TTACTGATAACTATGAGAGTGAATGTTTCT199960218TGATTATTGTTCTATGCCAGACATAGTTACACAAGTGTTAAATCGAGTA
chr1:202541779-202541797
TGCACCTGGTCTTGGCGCCCACATCAGATG202541779TGATTACTTCTCTACTGCATCCTCCACTCAGCATCAGCCTCCTTGTCAG
chr1:206208082-206208100
AAGCTGGGGTGGGCACACCCCTTTGCAAGA206208082TGACTACTGCTCAACTCCAGCAGACTGTGGCCAGGTGAGAACGAGGCCC
chr1:218114923-218114941
AATGTATTTAGTCATTCGATAATTATTTAT218114923TGAGTACTACTGTATTCCAGGCACTGGCAGGCTCTGGGGATAGAGCAGT
chr1:225954184-225954202
CAGCCAGTCTGGTTCCGGAGTCTGCATTCT225954184TGATCACTGCACTATACCAACTTTCACTTTGTTGTGAGCACCTGCCTAT
chr1:239170031-239170049
AAGACCAATGCGATTTTTAAATTTGACTAG239170031TGATAACTGTTCTATTCCACAGTTATTATCTTTATTTTTTACTAGGTCA
chr1:240181869-240181887
GTCCATGGCTTTTCTTAATTGGAAAATTTT240181869TGATTATTGATTTATTCCACTTACAAGTTATAGGTATATTCAGATTTTC
chr1:242427775-242427793
AGGAGGAAGGGCCGCTGGGGCTCACTTATT242427775TGATTCCTGTTCTGTTCCATTCTTAGAAGGAATTGCCACTTAAAAATGT
chr1:242894867-242894885
TGCAATATAGCAAGCCAAAAACCCTAGAGA242894867GGATAACTGCTCTATTTCAGCTGAAACCACAGGAACAACTGGCCCTCTC
chr1:246971900-246971918
TATTCCTGCATAGAACGGGATTCTTTTCAT246971900TGATTACTGTTCTATTACTGGTACTATGACTTATGGGACAGAGGTGGTA
chr1:247480675-247480693
ACCTGGACAGGGGCAGCCCAGCCAAACAGG247480675TAATAACTGCTCTACTCCACTTAATACCACATAAGAAAACTGTGGCCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGATTACTGCTCTATTCCA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGATTACTGCTCTATTCCA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.951 | 6.941 | search_plus_done; http://172.18.8.78:28018/match?q=TGATTACTGCTCTATTCCA&k=3&no_gap=1&offset=0&limit=50
6.963 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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