GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-29 08:41:38, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:7467434-7467452
GGCTGTCTTGGGGGACCACAGACAGGCACC7467434TGCATGCAGTGTGTGACTGGAGGGTCTGGGAAGGGCCCTGCTCTGTGGG
chr1:11147169-11147187
GTCACAGCTTTCTACACTCCTGATTCCATA11147169CGCTTGAAGTCTGAAACTGTTATCAACCAATGAGACACATGAAAGCAGC
chr1:14861646-14861664
TCCTCCTCAGAGTCCATGAATGTCCTGGGC14861646TGCCTGAAGTCTAGAACTGACCTCTTCAGTATTTCTCTCACCAGCATTA
chr1:19708667-19708685
ATCTTTCGGGCAGACTGGGGGCCTGCAATT19708667TGCAAGAAGCCTGTAACTCACATTTCTACTGGCTCACAGACGATAGCAT
chr1:21252378-21252396
ATTAAGTATTAAGGTGATTCCGAGGTTACA21252378TGCATGAATTCTGGAATTGGCAGAAACTTGGAGAGAGGTATTAACTAAT
chr1:27797534-27797552
GAGAGGCAAAAATATAGATGTGGCAGTTAC27797534TGCATGAAGGTTGTAACAGAAGACATAAGAGTAGGCTGTGGGCCGGGCG
chr1:36834524-36834542
GATACATACTCAAGTGTTTTGGGGTGAAGG36834524GTCATGAAGTCTGTAACTTACTCTCAGGTCCCCCGAGGCAGAGGAGAAA
chr1:43072487-43072505
ATAAAAAGCTGAATTGCTTCATAGGTACCA43072487TAGATGAAGTCTGCAACTGTGGTTTCTCAACATTTCAAGATAAATGAAT
chr1:44008296-44008314
CATGATGGCTCTCCTGGGAGCTCTGCCCCC44008296ACCATGAAGTCTGTAACAGCACGTTACACCTCTGCTAATGTATGGGGAG
chr1:64423293-64423311
GGTTGCATATCTTCAAAACATGATCTCCAC64423293TGCATGAAGTCTGTCAGTCTGTCTGTCAGTTGATCTGGCCATTCATTCA
chr1:65427775-65427793
TCTACAATCACAAAGATTTACTCTTTTACA65427775TGCATATAGTCTGCAACTGTAAAACTGAACATGCCCTCAGGGTCTTCCA
chr1:76708057-76708075
GGAAGATCTTAGCGGTCACTGCATGCTGAG76708057TGCATCACGTCTGTAACAGAGCTGGGAGCAAGTGTTAGGGTGATGTTGC
chr1:86475582-86475600
TTATATGAGGCCCATCGTTGACCAAAACAA86475582TGCATGCAGTGTGTGACTGTGTATGATATAGGTAGCATAGTTTAAAATA
chr1:87687810-87687828
GAATCATTAAGGGTGAAAGGGCCATCTACT87687810TGCATGAAGCCTGTAAATGTGAAAGACTAGGTCCTAGCAAGGCCAGCAT
chr1:88555476-88555494
GTACTGGAGCCCCAGCCCCAGCCTGTGAGA88555476TGCATGAAGTCTCCAACTTGCCTATTAGGGGTCAGTGACAAGTGAAAGA
chr1:101326075-101326093
ATGTTCTGACTAAAAGGACCTATTATGTTT101326075TGCATTTAGTCTGTAACTCCGCATCATGTCATGAATCACATTGCTGCCA
chr1:102994746-102994764
TATATTTTGCCTGATATGACTGTTTTTGTA102994746TGCCTGAAGTCTTGAACTGCTGAGTTATATTTCTTCAAACCAAGGAACC
chr1:110158510-110158528
AAGTAGCCAGAGAGAGAAAGCATGGACAAA110158510TGCATGAACTCTATAACAGCAGCCCTTGTTAAAGGAACCACTAAGTTGT
chr1:110685542-110685560
TAGGAAACATCAGGAAACATCTCTTATATC110685542TGAATGAAGTTTGTCACTGTCTCCTTTCCTCTGGGGCTGCTTTGGGGCT
chr1:116774106-116774124
AGCAGAGCGGGGGTCCGAGTCCAGGTGGCC116774106TCCATGAAGTCTGCAACTCTTTCCAACTCTGCTGTGAAAGAGGTGGGGC
chr1:119873200-119873218
CAACACAAACCTACCCCAAAGTTTGACCTT119873200TGCCTTAAGTCAGTAACTGAGGAGGGCCACGGTCCTGAGTTCAGTCCAG
chr1:153095630-153095648
TGAGACCAGTTTTTCAGGCTGCATGGGAGC153095630TGAATGAGGCCTGTAACTGCTGGCTTTCCCCCACTTCCCTGGTGACCTG
chr1:161381428-161381446
CAATAACTGCAGCAATCTCCTTGAATTGTC161381428TGCATAAATTCTGAAACTGTGGAATTGTCATTTCAAAGGACTTGTTCTT
chr1:172379384-172379402
TTGTATTCTGCTAAAAGGAGATGCCAATGT172379384TGAATGAAGTCTGAAACTCTAGTATGTGCATAGTTTGACGTGCAGCATG
chr1:174944200-174944218
ACTCATCCTGTGGCCTTCTGCCATCTCCAC174944200TGCATGCAGTCTGCATCTGCAATGATTTAGCCACACCTCTTCATTCACC
chr1:179315294-179315312
AACCCTCCCTCACCAGCCCCAGGACTTATT179315294TGAATGAACTCTGTATCTGTCCCTAAAATAGAATATGTGTTACATACTT
chr1:193325142-193325160
TCATCTTTTCATCTTCCCTCTCTCACCATT193325142AGCATGTAATCTGTAACTGAATTTGAACAATCCAACTTCCAAATGATTT
chr1:197037791-197037809
TGAGATTTGCTTGTTGGGTTGTGTGAGAGC197037791TGGGTGAGGTCTGTAACTGCCAGCTTTCCCCCACTTCCCTGACAACCTG
chr1:199922540-199922558
ATATACACACATTATAGGTGAGAAAATAGA199922540TGCATGAAGAATGTAACTTGTTTAAGGTCAAGAATATAACCAAAAGGAG
chr1:206906173-206906191
TGTCCACATCTGCCTCCTCTCCTCCTCAGC206906173TGCATGGAGCCTGGAACTGCATCAGTGACTGAATTCTGCCTTGGTTCTG
chr1:216835828-216835846
AGGAAAGCCCAGAAAACAATGGAAGCTCCT216835828GGCATGTAGTCTGTACCTGAAGTTTAAAATAAAATCTGTATACCTGAAC
chr1:221553843-221553861
AATAATTAGATGATATTAGAGATATGAATT221553843TGCATGAAGTATACAACTGAAATTCAAGTTTGAAACAAAGACATAATGC
chr1:222115395-222115413
GTTCTGACAGTCTTGGGAAAAGCTCTCCAC222115395TGCATGAAGTCAGCAACTTCTCCTGGTTTGCAGTTTGTATGTTTCTGAT
chr1:227303667-227303685
AATCAGTTCCAGTGATATATAAAGTAGATA227303667TGCATGAAGTCTGGAGCTAAACTCCTTGTGCTGAAAATCTAGCTCCACC
chr1:234324150-234324168
TGAGACTGGCCTTTTGGGTTGTGCGGGAGC234324150TGGATGAGGCCTGTAACTGCCAGCTTTCCCCGACTTCCTGACAACCTGC
chr1:234631383-234631401
GTTCCGGCTCAAGCAGCAGTCAAATTGCAA234631383TGAATGAGGTCTCTAACTGTATTAAGACCATGATGTCAAGCTGGGGGTG
chr1:241903596-241903614
AAGCATATCAAGATTTGTTGACGTCCATTC241903596TGAATGAAGTCAGTTACTGTCACTGTAATGAAAAGGATCTACCAAAAGG
chr1:247697837-247697855
AATAAAACGAGCACGATTTAGCAGGGGCAG247697837TGCATAAAGTCAGAAACTGGACAATTTCAGTGTGCTTCCGATGTCCCTG
chr2:3155132-3155150
TGAGACCAGCCCTTCAGACTGCATGGGAGT3155132TGGATGAGGCCTGTAACTGCTGGCTCTCTCCTACTTCCCTGACAACCTC
chr2:3918886-3918904
ATGTGGTGACATTATTAGAAAAAGCTGAAT3918886TGCTTGAGGTCTGTAGCTGCAGTTGCCCAGCATTTCATAAAGACAATTC
chr2:6107181-6107199
TACTCTGGGTGGGTGTAGAAGTGTGGTCTC6107181TGCATGATTTCTTTAACTGTGATCAACATCAGTGATGTCTGTGAATTCC
chr2:21030803-21030821
AGAGAAATGGAGGCGGGGTTCTGATCATCA21030803TGCATGAAGTCTGCTACTCTTTGGACATTCCAGTTGTGTGAGCCAAGAA
chr2:28026956-28026974
CTTAATGTATTTCAAATGACCACTTTCATA28026956TGAATCAAGTCTGAAACTGCATGCAGCAAAGTTTTGATATTATTTTTGC
chr2:34182356-34182374
TAATGAAGCTTATTGGAAGCTCTGTGTTCA34182356TGGATGAAGTTTGTAGCTGGCACGGTGGCTCACGCCTGTAATCCCAACA
chr2:71564040-71564058
CTAAATTTTACTTAAGGAGTTAACTAATTT71564040TGCATGAAGTCATTCACTGGCACCCCTCCTAGCAGGGTGGGTATCTTCA
chr2:72474767-72474785
ATTTGCTATGAAATTAAGAAACTTTTCGGC72474767TGGCTGAAGTTTGTAACTGCAACTACTCACGTAAACTCCCAGCTCCTTT
chr2:76194737-76194755
TTAAAATCTAAGAAAACAACCAAATATATA76194737TGCAAGAAGTCAGTATCTGGAAGAATATTTCTGTAGTGATGATGATATA
chr2:113668351-113668369
CATTTTTCTCTGGGACATGGGGACTCCACT113668351TGCATGAACTCTGGAATTGGGGCAAAGAACCATCATGAGAACAAGGGCT
chr2:137749857-137749875
TAAAATTTGTTCTCTTAGCAGAACTTGTAC137749857TGATTGAAGGCTGTAACTGATTTGATAGAGCTTCTGTCTTAAAGTGTAA
chr2:141134401-141134419
GAATGCCTCAGGGCTGGAAGAGACCTAGTT141134401TGCATGAATTCTGTAAATACCAGAGACCTGTAGTATCTCCCACAGAGGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGCATGAAGTCTGTAACTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGCATGAAGTCTGTAACTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.816 | 6.806 | search_plus_done; http://172.18.8.78:28018/match?q=TGCATGAAGTCTGTAACTG&k=3&no_gap=1&offset=0&limit=50
6.828 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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