GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-03 10:07:28, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:1680108-1680126
CTGCTGTATTATTGCAAATGTTTTCCTGCT1680108TGCATGTAGTCATTTGTTATGCATATTAATGAATTTCTATCCACATGAC
chr1:6834730-6834748
TGTTTTTTGTTTTTTTTGGAGATAATTCCT6834730TACATGTACTCACTTTATGTTTGTATGAGACTCATGATTTTTATCTCCT
chr1:7898849-7898867
ACAGACGTACCTACTCTCTTGGTTACTATC7898849TGCATGTAGTAACTTTTTACATCCTTTCACTTTCAACCTATCTGTATCT
chr1:27971499-27971517
CAGCTGTAGAACCCATAATAATGTCCCTCA27971499TCCATGCAGCCACTTTATAGACAGATTGCTAGGCTCTGCCTACGCTCAC
chr1:28665495-28665513
ACGTAATCACTGTGTATCCACCATGTTTTA28665495TTCATTTAGTCCCTTTATATCATAGAAACCTAGATTGCTGCTGGGTGCG
chr1:34714583-34714601
AAATTCTTGTAACCTTTTAATATTAACTGG34714583AGAATTTAGTCACTTTATATTTATTGAGATCACTGGTGGATTGGCACTG
chr1:56269889-56269907
CCTAACAGATTCCTTCACACCTGAATATTA56269889TGCCTGTAGTCACTTTATGTTAAAGCATAGGTTTCATTTAGAAGTCAGA
chr1:56773020-56773038
TAAGCAAATCTATCAGCACCATTTTCCAAC56773020AGCATGTGCTCACTTTATATCTCCATGTCACATTTTGGTAATCCTCACA
chr1:67606089-67606107
ACAAACACCATAATGAAAAAGAATGTATGC67606089TGAATATAGTCACTTTATAAAAGAATACCTACAAATGATCATTAATTAT
chr1:71794642-71794660
AGGTTGTTTATTTGATGTTTTTCTTCTTTT71794642TTGATGTAGTCACTTAATAGCTCTAAACTTCCCTTTTAGTACTGCTTTT
chr1:72459377-72459395
CAAAATGTGTTAAACATATTATCTTAGTTT72459377TCTATGTAGTCACATTATAAAGCAGGAATTATTGTATCTATTGTATAGA
chr1:73927781-73927799
TTTTTGCTTTTATTGATTTGCTTGTTTTTC73927781TGCAGGTAGTAACATTATAATACTGTTTAAATTGCCAGAGTATCAGTAG
chr1:80492649-80492667
TATGTGGAATTTTAATGAAAATCTAATTAC80492649TGCATGTAGTGATTTTATTATGTTTTAGTATCTAGACTGGTACAGATAC
chr1:86437865-86437883
GTCTCTTTTTAGAATTATAGTTTGAATGAT86437865TGCTTTTAGTCATTTTATAACCATTAAGAAGTTTTATCTAATTTTTAAC
chr1:88459426-88459444
AGGGGGAAGATCTTGTGTCCAATGTTAAGC88459426TGTATGAAGTCACATTATATGAAGGTAATGGAAAGAATCATTGATGGAT
chr1:98544495-98544513
AGGGGGTTAGGGACAAGCATTCAAGCCTCA98544495TGTATCTAGGCACTTTATAGACAGTATGTTATTTAAACTTCCGAACAAT
chr1:111343437-111343455
TTTCTTTAAGAAAAAATGCTGAAAATGCAT111343437TCCATGTAGTCACTTGCTAAAGGAAATGACAAATCTAAACTTGACGAAA
chr1:114138873-114138891
CAAAATAGAGAGTCTAGAAATCAATACACA114138873TGTATGTAGTCACTTTATTTTCAACCAAAGTGCCAACTGATATGGAAAA
chr1:115661521-115661539
CTGTTGGCAAGAAAACCTACATGTAGCCTC115661521TCCATGTGGTCTCTTTATATGGAATATTTTGGATTTTCTCAGAGCATAG
chr1:118366636-118366654
AAATCATACCATACAACAGTTAGCAATAAT118366636TGTATGTAGTCTCTTTCTAAAGTCTCACATCTTATAGCAGCTGCTCCAA
chr1:120210457-120210475
AGGCTTGCTGCTTATACCCTTTCTAATAGA120210457TGCATGTTGTCTCTTTAGATGTCTGGCCACACTACCATAACATAAGAAC
chr1:120557273-120557291
CTCACATCTCACTAGCAGCCTGGATTAGTT120557273TACATGTAGCCACTTTACAGATTTCAACGAAGCTGGGATCTGAATAGCA
chr1:143508148-143508166
AAAAGTTTGCTAAAACAGACTTTTTATTTT143508148TACATGTAATAACTTTATATTGAAGGGTTTCCAGAAATATAAAATGTTA
chr1:144380344-144380362
CTATTAAGATTTATGTTTAGGTTTTTTATG144380344TGGATGTTCTCACTTTATAATATTGTTTGTCTGCATAGTTTAAAGAAAA
chr1:147971503-147971521
CTATTAAGATTTATGTTTAGGTTTTTTATG147971503TGGATGTTCTCACTTTATAATATTGTTTGTCTGCATAGTTTAAAGAAAA
chr1:152222759-152222777
CTGGCTTCTTTCACCTAACACCCATGTTTA152222759TGCATGTAGCCACTTTTCATTCATTCTCATTGTTCTATTGTATTACATT
chr1:157400169-157400187
TTTCCCACTTGAGTAACATTTTACAAGCTC157400169TTCATGCAGTCACTCTATAGAAAACACTATGGCTTTCACTGGGGAAAGA
chr1:157462144-157462162
TCCCAGAACAACTCTTTGTGGTGGGTATAA157462144TCAATGTATTCACTTTATAGATGAGAAAAGCAAGGCTTAGAGGATCAAA
chr1:162132361-162132379
TATTCCTCTGCCAAACCCAAGAGAACTTGG162132361GGCAGGTAGTCACTGTATATTCCTGTTGTGAGCAGTGATATCATTTCAG
chr1:167126422-167126440
TAAAACAATACATTTATTTATTTAATTCAA167126422TGCTTATAGTCACATTATACAAATTGCCATCAGGTCACAGGTCTCAATA
chr1:180218110-180218128
TGCTTCTGGCAGGAGGCAAGCCAGGCTCGG180218110TCAATGTCGTCACTTTATATGGAAACATGACTAAGAAAGAGGCAGTTTC
chr1:185201382-185201400
TCCTAACACAAGTTAAATGTTACCTCTAAA185201382TGCAAATAGTCCCTTTATAATTTAAAGCCTTATTAAAATAAGTGTGGCT
chr1:194252261-194252279
TAGAAACTATCAACTTAGAGAATAATTTTC194252261TGCATGTAGTCACATTAATGTCTAAAATTTTTTAGTTCCAACCCCCACC
chr1:194711515-194711533
ATACACTTACTTAAAAACAGATAAAGAAAT194711515TCCATGTGGGCACTTTATAAGTTCATCCTTTACTTGATTCATCTTTTAC
chr1:198249419-198249437
CCAAGCCAGGGCCATTTATCACTAGTAGAT198249419AGCATGTTTTCACTTTATATTACTCATCTGAATAGAAGAATGTCATAAA
chr1:202428690-202428708
TTTTTCCCCCCTGAAAAGCTCAAGTGTGCT202428690TGAATGTATTCTCTTTATAAGATGGAAAGGAATAGAACAATATGCTCCC
chr1:216216861-216216879
GAAAACCATTGAAGAATCAATCTATTACCA216216861TGGATGTAGGCACTTTAAAAATATTTCACTTTCTTTATATTTGGGGCTT
chr1:217903094-217903112
TTTATTCATAATTACTAGTTAATGACATAA217903094TCCATGTAATCACTTTAAAATATGGAATGATATTAACTATTTGATCACA
chr1:227368858-227368876
TAGGATTCAAACTTTCAGCTGAAATTAAAG227368858TGCATCTATTCACTTTACAGATGCATAGTGCATAGATGCACAAATCTAA
chr1:232497216-232497234
CCAGGCGATACCAGTCTACATATTTTTTAA232497216TGCATGTACTCATTTTATCTTCACAGGAACCCTACAAGGTAGATTCTAT
chr1:235980929-235980947
TGAACTAACACAGAAACAGAAACCAAATAC235980929TGCATGTTCTCACTTTATAAGTGGGAGCTAAACCTTGGGTACACATGGA
chr1:237215221-237215239
GAGAGGGAAACTTGGTGCCCTGCTTCTACC237215221TGCAGGAAGTTACTTTATAATATCAAATGTGAATTTCTTACATTACCAG
chr1:246952727-246952745
CTCAGGGAACGTTTAACGAGTTGAATGTTT246952727ACCATGTAGTCACTCTATATGGAAATCATAATTCAATTTTGTAAACATC
chr1:247143594-247143612
TGAAAGACTGATTTTATTCTTATAAAATGA247143594TACATTTAGTCACTTTCTAGTTATAGACCTGTACTATTTGGCTGTTATA
chr2:145646-145664
GAGCAAGTCTATTAGCACTGTTTTCCCAAC145646TGCATGTACTCACTTCATGTACCTGTATCAGCATTTCTTGGCAATAAAG
chr2:2048546-2048564
TATACAGGCCAGCACTTTAAAAGCGATTGG2048546TGTCTGTAGTCACTTTAAAAATAATTCAGCTCACAACAAGGACTCCGTG
chr2:7091905-7091923
TAAATGTAATTACCTTTTTAATATTGATCT7091905TGCATCTAGTCACTTTACCAAACCTTTGGTATTCTTAATATTTTGTCTA
chr2:8585092-8585110
TCTGTGCTGCTTGGATTTTTTTTAATAGTG8585092TGCATGTAGTGTTTTTATAATTTAAAAAGCAATTTTTAATCATCAGTAA
chr2:13350636-13350654
TAAAAAATTCTACCAGCACCTCTTTCCAAC13350636AGCATGTGGTCACTTCATATCTATGTACCACATTTTGGTAATTTTCTCA
chr2:19030416-19030434
ATATACAGTATATATAGTCACCATATATAC19030416TGTATGTAATCACTGTATATGTATATAAAACTGTATATACACACCCATA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGCATGTAGTCACTTTATA
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGCATGTAGTCACTTTATA | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.732 | 7.722 | search_plus_done; http://172.18.8.78:28018/match?q=TGCATGTAGTCACTTTATA&k=3&no_gap=1&offset=0&limit=50
7.743 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).