GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-05 18:42:32, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:25234903-25234921
TACGCCTATAATCTCAGCACTTTGGGAGAC25234903TGAGATGGGAGGATCAGTTGAACCCAGGAGTTTGAGATCAGCCTGGGCA
chr1:25646000-25646018
TACACCTGTAGTCCCAGCTGCTCTGGAGGC25646000TGAGATGGGAGGATCAGTTGAGCTTGGGAGGCAGAAGTTGCAGTGAGCT
chr1:27630999-27631017
TGCACCTGTAGTCCCAGCTATTCAGGAGGT27630999TGACATTGGAGGACCAGTTAAGGCCACAGTGAGCCATGATCATGCCACT
chr1:27766936-27766954
CACAGCTGTAGTCTCAGCTACTCAGGAGGC27766936TGATATGGGAGGATCACTTTAGCCCAGGAGGTCGAGGCTGCAGTGAGCA
chr1:30093963-30093981
TTGTCTTTTCTGAGCAGCGATTTACAAGGC30093963TGCAATTTGAGGTTCAGTTTCTAAAGGAAGACAGGAGACTACTGAGATG
chr1:32439115-32439133
ATCTGTAAATCCCAGCACACTTTGGGAAGC32439115TGAAATTGGAGGATCACTTGAGCCCAGGGGTTTGAGACCAGCCTGGGCA
chr1:32878271-32878289
CGTGCCTGTAGTCCCAACTACTTGGGAGGC32878271TGATATGGGAGGATCACTTGAGCTCGGGAGGTTGAGGCTGTAATGAGTG
chr1:37192809-37192827
GCTGGCCTAACCACCCTCTTCTTTGCCTAC37192809TGGTATTGGAGGAGCAATTGAACCACATGCTTGGTCTGGCTAATGGCAA
chr1:57484643-57484661
CCCCTGCTTCTGTGCTGTCTAACCCTGATT57484643TGCTCTTGGAGACTCAGTTCACTATCACCTCTGTTGGATGGCTTCTTGC
chr1:62020023-62020041
CCAGGAAGGACTGAAGCCCCTCTGCAGATT62020023TCCCCTTGGAGGATCAGTTTCCTAGGCGATTTGTCATGGAGAGGTAGAA
chr1:63126670-63126688
TGCGCATGTAGTCCCAACTACTCAGGAGGC63126670TGATATGGGAGGATCACTTGAGCCTGGAAGGTCAAGGCTATAGTGAGCT
chr1:88165506-88165524
GAGTTTTACGTTTCAACACGTATTTCACTT88165506AGCTATTTGAGCATCAGTTTAACTAGACTGTAATCTCCCTGAAGGCAGT
chr1:88556306-88556324
TAAAGAAGAAACATTTGAAATTATTATGAG88556306TGCTATTGTAATATCAGTTTAAAAGTAAAATATTAAGCCACAGTTATTT
chr1:96666943-96666961
TAATTTAGAAAATAAAAAATAAAATTTTGT96666943TGCTATTGGAGGATATGCTTGTGTATAAAGAAGATCCAAAAGAGTCTAC
chr1:98405755-98405773
AACAAAGATCTGGGCACTAGGTGTGCTTAT98405755TGCTATTGGAGTGTCATTTTTCTAGGTCTTCTCAGCTGACAGAGCAAAA
chr1:98847704-98847722
GATGAAAGTAGCACTCACAGAAAAATAACA98847704TGCTGTTGGAGGAGCAGATATTGAGACTGGAACAATGAAGAAGATGTTC
chr1:100380225-100380243
CTTTCTCTGTATCTCTGATAAATTTACTCA100380225TGCTATTGGAGTAAAAGTTCTGTGTTTATTTATGGCCCCAGAAGCAAAC
chr1:100550795-100550813
TCTTTAACAGCTCAAGTAAAATTTGAAACT100550795TGCTATTTGAGGATCTGGTTTGTGTTGACATATTTTTTAAGCACCTGAG
chr1:101293624-101293642
TATATAAGGAAACATAATTAAAAACTTTGT101293624TGCTATTATTGGATCAGTTATCTGTTAAATTACTTAAAAATAAGAAAAT
chr1:115682565-115682583
CACATCGGAGTGCTGGGGCTCTGGGAGCTG115682565TGCCATTGGAGGGTCAGTTGAAGAAATGGGGATGGTGTAGACTGGAGAA
chr1:144585769-144585787
AATGAAGAACCCTCCCCAGCTGGAAGGTGA144585769TGCTATTGAAGGCTCAGCTGACAACATACATGGGCATCAAGTCATTGGC
chr1:147706608-147706626
AATGAAGAACCCTCACCAGCTGGAAGGTGA147706608TGCTATTGAAGGCTCAGCTGACAACACACATGGGCATCAAGTCACTGGC
chr1:148545132-148545150
AATGAAGAACCCTCCCCAGCTGGAAGGTGA148545132TGCTATTGAAGGCTCAGCTGACAACATACATGGGCATCAAGTCATTGGC
chr1:152558025-152558043
CCTTTCTCCCTTGGTGCTGGTGCTTGTGCC152558025TGCCATTGGAGGATCTGTTAGGTGGGCTGCCCAGTGTGGCTCTACCCAT
chr1:152703908-152703926
TATGCCTGTAATCCTAGCACTTTGGGATGC152703908TGAGATTGGAGGATCACTTGAGCCCAGGAGTTCGAGATCAGCCTGGGCA
chr1:153867956-153867974
CATGCATGTAGTCCCAGTTACTTGGGAGGC153867956TGATATGGGAGGATCACTTAAGCCCAAGAGATTGGGGCTGCAGTGAGCC
chr1:154398150-154398168
TGTACCTGTAGTCTCAGCTACTTGGGAAGC154398150TGCGGTGGGAGGATCAGTTGAGCCCAGGAATTAGAAGTTGCAGTGAACC
chr1:157678293-157678311
ATTTGTGGCATCTCGACATTGTTATAATTT157678293TGCTATTGGAGGATCTCATTGTTTAATCTTATTGCAGAACCTCTGAACT
chr1:157715639-157715657
CACATTTTTGCAACTATATGCATACTTTGG157715639TGATATTGCAGGTTCAGTTCCAGACTACCAAAATAAAACAAATGCTGCA
chr1:160563272-160563290
GAACCTTGCATCCCAGGGATGAAGCTGACT160563272TGATAGTGGAGGATAAGTTTTTGATGTGTTGCTGGATTCAATTTGCCAG
chr1:169767322-169767340
TGCATCTCTAATCCCAGCTCCTTGAGAGGC169767322TGGTATGGGAGGATCACTTTAGCCCAGGAGCTTGAGGCTGCAGTGAGGT
chr1:170649905-170649923
TCCTGGCTGCATCACCTTCTCAATGAGTTT170649905TCCTTTTGGAGGAACAGTTACCAAAGACAGCTGGGCTTCCTGGTTTAAA
chr1:170742156-170742174
GGTGGAAATGCCATTAATAGAGACATGTAA170742156TGCTATTGGAGGAGTAGGTTTAGGGAGCCCAGCAAAGAAAACCAAGATT
chr1:186368132-186368150
TATTGAACACAGTTGCTGATCGTTGTGAAA186368132TGCTATTTGAGGATCTGCTTTTGAATGAAATTCCAGAAAAAAAAGTTAT
chr1:195046646-195046664
CATTCAGGTAAAAAAATACAATCTGAATAT195046646AGCTATTGAAGGATCAATTAATAAAGAATGGGCTGTATCAAGGGTGCAT
chr1:195932701-195932719
ATTTTAAAGCTTAGTATTTTTCTGTTATTT195932701TGCTATTGGTGGATCATTGGCAACACTAAACCATATTGATAAAGATTAA
chr1:216980744-216980762
GATCAAGAGTCTGAGAAAAACATATCACAT216980744TGCTATTTTTGGATCAGTTTAATTTACAAACTAGACTTTCTGTTCTAAC
chr1:225156616-225156634
AAAAAATGAAACCAATTCTTTGTAGTTTGA225156616TCCTATTGAAGGAGCAGTTGCCTGAGTGACATCTGGGTTCTACTACAGT
chr1:239553353-239553371
ATGATGACTAATAGCATTATTCTCACAGTG239553353TGATTTTGGAGGATCAGTGAGTAACTAGAGATGTTGTCTTTTATGTTTG
chr1:242357115-242357133
GGAGTCATAATGGCCCCTGTTTCCTTCAAG242357115GGCTATGGGAGGATCAGATAAATTAATGCAAAAGTAAATGTTTTATAAA
chr1:244905139-244905157
CAACTATGTCCCAGCTGCTCCAAAGGCTGA244905139TGATATTGGAGGATCACCTGAGCCTAGGAGGTCACGGCTTCAGTGAGCC
chr1:248532120-248532138
GGTATCTATAGTCCAAGCTACTTGTGAGGC248532120TGATATGGGAGGATCAGTTGAGCCCAGAAGGTTGAGGGTGTAGTGAGCC
chr1_gl000192_random:455933-455951
AATGAAGAACCCTCCCCAGCTGGAAGGTGA455933TGCTATTGAAGGCTCAGCTGACAACACACATGGGCATCAAGTCACTGGC
chr2:5255730-5255748
ACATGGTATCTGTAATACGTTATAGTCCAC5255730AGCTATTTGAGTATCAGTTTGTTCAGGCTGCTATAACAAAATAACATAG
chr2:12799792-12799810
GATTGTCTACTCCTTCAAATGCCTGAACTT12799792GGCTATTGGAGGATCACTCTCATGCCCTACAATAGTATCTCTTATGACC
chr2:14873206-14873224
GCAAGTGATGATGGGGAAGACTGTTTCTGC14873206TGCTATTGAAGGAACAGATGATACTCAACGTGTGGACAGTTCATAAGCT
chr2:26394005-26394023
TTGCCGTGTGACCTTAGAGCAAAGCATTTC26394005TGCTCTTGGAGTCTCAGTTTTTTCCTCTGCAGCAGTTGAGGATTGAACC
chr2:29120033-29120051
TGTAGAGACATTCCCTACTTTGAGGGTGTG29120033TCCTCTTGGAGCATCAGTTTGACTTATAAACTAAGGAGAGACAGTTTTC
chr2:38856032-38856050
ACAACAGCAAAATCAGCTTGTAAAAACTTT38856032TGATATTGGATGATCAATTATAGATTTATTTTATAAATATATAGAATGT
chr2:50241383-50241401
GTTTCTTTATCAAGAGTAACCATTCGAAAA50241383TGCTATTTGAGGATTAGTTACCAATGCAACTAAACTTCATAATGAATGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGCTATTGGAGGATCAGTT
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGCTATTGGAGGATCAGTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.679 | 6.669 | search_plus_done; http://172.18.8.78:28018/match?q=TGCTATTGGAGGATCAGTT&k=3&no_gap=1&offset=0&limit=50
6.691 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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