GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-02 23:13:48, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5468564-5468582
GGGAATGGCCCAGCCCAGGGCCTCAGCTGA5468564TGGTCTTCAGTACTTCAAGCAGAACAAGGGCACCATTCCTCCTGCCCTC
chr1:12255533-12255551
TTCTCTTGTTTGTGGCCTCATGTCATAAGA12255533TGGTAATCATCACTTCATATGTCACCTCTAAGTTTGAGGTGGGAAGAAG
chr1:16514552-16514570
TGATGACGATGATGGCGATGACGATGATGA16514552TGATATTCATTGCTTTATGGTTTGCCAAGTACCTTCTCCGTCAATCATA
chr1:22386855-22386873
TCTCAAAAAATTAAAAAAAAAAAAGATTAT22386855TGCAATTCATTACTCCATGTGGAAGGAGGAGAGGTGTCTGAGAACAGAT
chr1:28605372-28605390
TAGTTTTGAGGATTCCACATGGCACATAGT28605372TGGTATTCAATACAGCATGCTCATTCTCTGCATTCCTTGACGTGGTCCC
chr1:30464288-30464306
CAGGCATAAACACTTAGAATTATAGAATGT30464288TAGAATTCATTACTTCATTCACTAGCTATTTTCTGAATGCTCCATTTGT
chr1:34790722-34790740
CTTTCGGTGTCCTCATATGAAAAATAGAAA34790722TGGTATTGATTACCTCATGGTGGCTGTGAACATTCGACGAGATGATGAA
chr1:42647999-42648017
CACATACCTCATTACAATTCAAAAGTATTT42647999TTGTATCCATTACTTCATCTGACCCTCCCACTAAGCCCCAAAGGAGGGT
chr1:43856552-43856570
AAGGGTGAGAGATGTGTATAATGATAGAAA43856552TAGTATTCATTACTGCATACATACTGCATGCTCAGTACCATTCTAAGCT
chr1:43957644-43957662
GTGTGTGTGTGTGTGTGTGTGTGTCCCAAC43957644TGTTATTCATTGCTTCAGGCAGCCATGAAGTTAAAACATTTGCCTTTAA
chr1:46916966-46916984
TTGCTGAGCATCTCCTCTATGCCAGTCACT46916966TTGCATTCATGACTTCATGTGATCGTCACACAATCCTAGACCCAGGCAT
chr1:50960722-50960740
ATGGGAGATATTTTGATAGAGGCATGCAAT50960722GGGTATTAATTACTTCATGGAAAGTGGGGTGTCCGTCCCCTCAAGCACT
chr1:53741749-53741767
AGAACAGACACACGGCCTTCTTTTGAGTCT53741749TGGTGCTCATTACTTAATGACTTCATCCATTTGGCAAACCTTCCTGTGC
chr1:57996162-57996180
ATCTAGCTTACAATGGAATCCAGTAGGATC57996162TTGTATTCTTTACTACATGATCTAATATAATGGCATTAAATTAAATATG
chr1:61836948-61836966
TAAGAATGCTTTTCAGGGCCAGTTATTCTT61836948TGATATTTATCACTTCATGGTGCTGACACCTGCTTCTAATTTTAAGAGT
chr1:63849309-63849327
CAATGTGTAATAATCACATTAGGGTAAATG63849309AGGTATTCATTACCTCAAGCATTTATTCTTTGTATTATAAACATTCCAT
chr1:67224466-67224484
TGCCAGTAAAAGTGACCAAAATGGAAATGA67224466TTGCATTCATTACTTCATTTCAACAGTAATGAATTTATTCTATCATTCA
chr1:68842602-68842620
TAGCTTTCTAAAAATGAATGATTCTATCTT68842602TTGTAATCAGTACTTCATGCAGTTGTAGTCACTGCAAATGGGCAAGCAG
chr1:71041262-71041280
TAAGTAAAGATGCAGTAAAGGCAAATTGTT71041262TGGTATTCATTATTTCATATCAAATACTTGTAGTAAAACAAAAAAACTG
chr1:72248179-72248197
ATAGTTTTCTTTGCAATCCATAATTATCAT72248179TGGTATTTATTTCTTCATTTGTTTATTATCTGTATCTCTTCATAGAATC
chr1:73532980-73532998
TTCCCAGGTATCACTAGTTAAGATAAATTT73532980TTCTATTCATTACTTGATGAATTACAAACATTTCTATTTTTAGCATAAA
chr1:78793675-78793693
TGCGTGGTGATGGATGTGTTAATTTGACTG78793675TGGTAATCATTACATGATGTATATGTATATCAAATAATCATGATGTACA
chr1:87926346-87926364
CCATGAGAGTGATAACTCATTTCTGCAAGA87926346TGGTATTAATTCATTCATGAGAGATCTGCCCCCTTGACCCAAACATCTC
chr1:96640910-96640928
TGACTAGAAACGTAATGATTCATCTTCATT96640910ATGTATTCATTACTTCAAGCTCAAATGTGAAGATTTGGAGAATAATAGA
chr1:102619605-102619623
CTTTTACTGAATGTCTTTTCTTTTTATTCT102619605TGGTATTCTTTACTACATGTTCGCTGAACTTGCTGTTTTTTAAAAAACA
chr1:103421984-103422002
CTTCAGTTTAATAGATTGTCTGATATTTTC103421984TGGTATTTATTTCTTTATGGTACTTTCACAGAAAAAGACTTATAGCAGC
chr1:106231071-106231089
GATTACAGGCGTGAGCCACTGAGCCCAGCC106231071TGTTATTCATTATTTTATGTCGTTAAGAAAATAAAAGTATAAATTAAAA
chr1:112575008-112575026
GAGAAAGAGAGAGAGAGAGTTGGGGCAGGG112575008TGAGATTCATTACTTCAAGAAGCAGTCCTCATATGTGAGTGCTCCCCCA
chr1:144008377-144008395
CCTTCCTCCCCCATTTTCTCCTTAGAAATG144008377TGGTATTCATGACTTAATCAGAGAAAATTCCTGAAGAAGAAGATGAATT
chr1:156582730-156582748
AAGTGGAAAAACACAATTCTCAAACTTTTT156582730TGTTATTCATTAACTCATGTCATCATTTTATTGAACTCATTAATGAGAG
chr1:158895784-158895802
TTAATTGACTTGCATTTATGCCTTCTCTGA158895784TGGTTTTCTTTTCTTCATGTAGATCTGATCTCCTTCACTTTTGAATAAT
chr1:160633117-160633135
TGCTCACTCTTACTTCCCTCACTCCCTCAC160633117AGGTATTGATTATTTCATGGGCACTCCTCCATAAACTTTTCACACACAA
chr1:165062859-165062877
TACCTGCCTGGGCCACCAGGGTAGGCTTAC165062859TGGCATCCATTCCTTCATGGATTTTGAAGGGGCCTAGTCTCAGCTCTAG
chr1:166108038-166108056
ACTCCATAAAGGCAACAAGATTTTTGTCTG166108038TTGTATTCATTACTGCATCATTATTGCTTAGAATAGTGCCTTGCACATG
chr1:167709187-167709205
CAAGTCTTCCCATCCCTCCCTGCTTTTGTT167709187TTGTATTCGTTACTTCCTGGCTGCTTCCCTCTCCCGCTCCAACTTGGAG
chr1:169751952-169751970
TAGGTGCTCAATACATATTGAACTCCTAGG169751952TGCAATTCATTAATTCATGAATTAATGAATTAACACGCTCTCAAAGTTT
chr1:171882484-171882502
TGTAGATATGTTTTTCAGATAAAATTATGA171882484TGGTATTGAGTACTTCATATTATAGAGTAGCTGACAGCATCAAAATATG
chr1:172852046-172852064
TCTAGTTTGCATCTTTCTACCTACAACTAC172852046TGCTACTCATTACTTCATTCATTCCACAAATATCTTAAGCCCCTAGTGT
chr1:173629628-173629646
CAAGGCTCCCAATGTCCCACCCCTGCCTCC173629628TGGTATTCATACCTTCGTGTAATTTCCTTACCTTGAATGTGGGCTGGAC
chr1:175392354-175392372
TTGTTAATACATCAAATATAAAGAAGCACC175392354TGGTGTTCATTTCCTCATGGGCCAGAGGTTCATTATGGGCCATCCAGCT
chr1:189541479-189541497
TGTAACTCCAATCTCTGCCTCCTTGTAACA189541479TGGTATTCTTTGCTTTATGTGACTGTGTATTCATGTAGCCTTCTTACAA
chr1:190612946-190612964
TTCACTAAATTAAAGCACTATGCAATAAAA190612946TGGTATTCATTATTTCAGAAATACCTGATTAAAATTTGATCTGTTATTC
chr1:191913100-191913118
TAGATAACTGGATTATCAAACAACTAAGGA191913100TTGTATTCATTACTTCTTTTCAAAATGTGTCAATTTCTTTCAGTTAATT
chr1:194833615-194833633
AATCTGCCTAGTATTTTAGATATTATCCAG194833615TTGTATTCATTACATCATGAAATAAATAAATAAATATATATATATATAT
chr1:198200783-198200801
AAATACTTAGACCACATTAAAATTATGAAT198200783TTCTATTCATTAGTTCATGGAAAGATACCATTGGGAAGGTTTTAGAAAG
chr1:213219965-213219983
GCTTCTTGGGCAGTCGATTGTTTGCTCAGC213219965TGTTATCCATTACTTCAGGGAGCAAAGACAAACACATTTACCTATAAAT
chr1:214665456-214665474
CATTTTGGGATGAGATTTTATTTTAAAATA214665456TGATATTCATTAATTCATTTAATGAAGACACATTTACTAAAGGAACCTA
chr1:222585671-222585689
TGCTTACGACAGTGCTGAATGCAGGGTGGT222585671TGGTATTAATTCATTCATGCGTTAAGCAAACATTGAGCACCTACTATGT
chr1:231648819-231648837
ATGTAGATATAAACAATCTTTACATTTTGG231648819TGGTATTCATGCCTTCATTAAAAATCTTAAAAGTCGGCCAGGCACAGTG
chr1:232062658-232062676
GGAATGAGATTTTCCCAAGGGGAGGAAGCA232062658TTGTCTTCATCACTTCATGTATTTTTCTCAGAAGGCTATTGGCCTCCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGGTATTCATTACTTCATG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGGTATTCATTACTTCATG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
7.410 | 7.400 | search_plus_done; http://172.18.8.78:28018/match?q=TGGTATTCATTACTTCATG&k=3&no_gap=1&offset=0&limit=50
7.422 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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