GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-20 02:56:36, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:43465219-43465237
CTCACACTGACCCAGTCCAAGGGGCATTGG43465219TGTAAGAATATGCATGAATCACTAAGTGAAATTCCAGGAATATTACAAA
chr1:56277527-56277545
TCAAGAATTAGCTTCAAAGAGTAAACCCGT56277527TGTAAGAATAGGAATTGAATTAAAGTGCTGGGGCTGACACATCAGCCTA
chr1:61335625-61335643
CCATTATAAATATATGTAAGTATATTAATT61335625TCTAAGAATATGCATTAACTTACAAGATTTCTGTACACTCCAACATTAT
chr1:64175972-64175990
CTTCAAAATATAGAAACAAAAACGGTTTGA64175972TCTATGAAGAGGCATTAACAAATCCTTCACTATTTTAATACAGCTTTCT
chr1:64327010-64327028
GTTTGGGGAGAAATAATTAAATGTTGCAAA64327010TGTAAAAATTGGCAGTAACATTTTCCATTTTGCCAATAGTCATTCCTTT
chr1:66202541-66202559
TGTACAAAAGATGATCAATATAAAATAATA66202541TGAAAGAATAGGTATGAACCGAAAGAAAGAGTATCTAGAAACAAACCGT
chr1:67301060-67301078
TTCTGGAAGAAGTGAAACCCAAAGCAATAG67301060TTTAAGAATAAGCATAAACTGTCAAGTCAGAGGAAGTTCGTTAGTGAGA
chr1:70493047-70493065
TGTCTCATATTTTCTCCCTCTAAATTTAAT70493047GCTAAGAATAGTCATTAACATGTGTTCCCAAAAGTTATATTGATAACCT
chr1:80403334-80403352
AAGAAGGGAGAGTGACAGAAGATCATTCCT80403334TGTAGGAATAGGCAATGACCCTTGCACTTCAGAAGAGAGAGAAATAAGA
chr1:80798117-80798135
TTCTCATAGTAATACGTACAAACCAAAAGA80798117TGAAAGAATGGGCATAAACATTTGGGTAACAAAAAGACCTGTGAAACGT
chr1:81933525-81933543
GGATTGATTTTAATAGAAAGGAACAATATA81933525TGTAAGAAAAGGAATTAATGTTAAAAATGTTATGAAGTATAAATTAATC
chr1:85531034-85531052
AGAGGGGGACTCTCTAAAATAAAATGTTTA85531034TTTGAGAATAGGCATTAACAATGGGAAGATGCATGCGGTAGTAAACTAT
chr1:86481903-86481921
ATACCCAATGTGTTTTGAAATCATACAGTA86481903AGTAAGAATAGGCATTTTCTAAAGAAATCAGCCAACCTTGAAGGACAGC
chr1:101043421-101043439
AAAAGAGATAATTTGTGCATTTCATTGGCA101043421TATAAAAATAGGCATTAGCTTGTAGTGTTGAAGGATGCAGAAGTTTAAT
chr1:105134591-105134609
CAGGAAAGGTTTGTCTGGTGGAGAAATATT105134591TGTGAGAATAGTCATTAAATCCTTAGTTTTATGTAGGAAAAATATAATT
chr1:106093720-106093738
TGTTTGCCTGATTATTATTTCCCATAGAAT106093720TGTAAGAAAAAGCATGAACTCTACATTGTAAAGCAAAACAAGAGAAAGA
chr1:109298839-109298857
GAAAAAATACTTTATAAATATGTGTGGTTT109298839TGAAAGAATAGGCGTTAATTGGCAATTTATTTAAACAGCATTGTGGCAG
chr1:118146122-118146140
CTGAAAGAGTAGAAATGGTTGAAAGGCCAA118146122TGTAATAATTTGCATTAACTTTATTGTGGTTGGAAGTTTATGGAAGGAT
chr1:149196170-149196188
TATGGTTATTTGTTTCTGTGTGTCTTACTT149196170TGTATGAATATACATTAACTTATTTATTCATTTGACTGTTGTTGAACAT
chr1:186020115-186020133
GCATATGAGACACGTTTAACTGAGCCCTTA186020115AGGATGAATAGGCATTAACTCTGTGAAGAGGGTAAAAGCAATGCAAAGC
chr1:187195764-187195782
GAATGACTAATCTCCCTCATATTCAAGTAA187195764TGTATGAATAGACATTAATGAATCAATGCTGTGGAAACAGTATAATTAA
chr1:196245259-196245277
TTTCTGCTTTTATCTATTGACTTCTCACTC196245259TGCAAGAAGAGTCATTAACAGTCTTTTCCATATATTCCACTACCTTTGC
chr1:205131886-205131904
GAGAGTTCAAGGGAACAATGTTAATAATTA205131886TTTAAGAATAGGCATAAACCAGAATTCTCCCAGGCAGGCAAACCAGAAC
chr1:212445379-212445397
AGCGTGACGGAGTGGGACTTATCTGCTGAG212445379TGTAAGAAGAGGCCTTAACTAATCAAGAAGTTGGGAAAGCTGGAAGACT
chr1:219565797-219565815
AACAGAAACTGACAGTAAGTGGCAATTTGG219565797TGTAAGAAAAGTCATTAGCTATGATGGGCAAGGGAATCTTGGAGCTGTA
chr1:224098844-224098862
AGTGAGAATATGTGTCTGTATTTTGCAATC224098844TGTAACAATGGGCATAAACTAAATGTTTTCCAAAGGGAGTAAGGCAAAA
chr1:231659292-231659310
AAGATGACTCTAGTGTTTAGTCTGACCTGC231659292TGGAAGAATAGAAATTAACTGAAATAGGGAACACTGCTGAAGAAGTAGG
chr1:232660426-232660444
ATAAAATAAATAACTACACAATCCCAATTT232660426TTTAAGAATATGCATCAACTTGAGGATTTATAATATAATATTATGTGTA
chr1:248664335-248664353
GGCTTTACTAGCTTTTGTGAAGGTATGTAG248664335TGTAAGAATAGTTATTAAAATTGATGTTTCTATGGGGATACAATTGTTA
chr1_gl000192_random:546934-546952
TATGGTTATTTGGTTCTACGTGTATTCCTT546934TGTAGGAATATACATTAACTTATGTATCTATTCTACTGTTGTTGAACAT
chr2:1860097-1860115
ACCACCAAAGAAACAATCTCTGTGAGCCTG1860097TGTAAGAAGCGGCATTGACCACACGTCCATGGAGGTCATAAGATGTGTC
chr2:6156827-6156845
ATTTAGATATTTATTAGCGTTCTCCTTCAC6156827TTTAAACATAGGCATTAACATGTACATTTTTTTCTCTCAGTTCTACTAT
chr2:6518835-6518853
CAAAACTACCATGTAATACCACATTACTCC6518835TGCAAGAATAGCCATTATCAAAAAATCAAAAAATAATAGATGTTGGCAT
chr2:9512334-9512352
GAAACTGGACAACTGTCCAGTCTAACTGCC9512334TGTCAGAAGAGGCATTTACATCATTAAATGGGCTGCCCACCATGACACT
chr2:12645316-12645334
AAATGATGTTCTTTTCCCTGCCTGATTCCC12645316TGTAAGAAAAGGCAATAAACGCTACCAACATTTACTAAGAATGTTACAA
chr2:14867800-14867818
TATTTTTTTAATTGTTCCAAGTTCAAACAA14867800TGGAAGAATATGTATTAACACCTGTTAGAAATATGTACATCTTTTCTTC
chr2:17248792-17248810
GTTTAAATAAATTATATTGCCTTCATTCAA17248792AGGAATAATAGGCATTAACTTAAAAAGGATGTAGCAGTTTTTTAATAAT
chr2:25219207-25219225
GAAAGGAAAGCAGGTCCACTGATGTGTTCG25219207TGCAAGAATAGCTATTAACAGGGGTCCATGGAACAAGGTCTAGAGGATC
chr2:29348159-29348177
GAATTATGAGGATTCTTTTTCAATCTTCCT29348159TGTGAGAATAGGCACTAATCCCTGTAGTCCTTATGGATGGTTCTTTCCC
chr2:36552990-36553008
AATAAAACAGTAAATTTAGAAAACTTGATT36552990TCTAAGAAGAGGCATTAATTTGAAATATAAAACAATACAAGAAAAGTTT
chr2:44782083-44782101
GATCTGTTAAATAAGATATTTAAAGCAGAA44782083TGGATGAATAGGAATTAACCAGATGAAGGGCGTTCTGGTTGGGGTGGGA
chr2:62110825-62110843
AAATTCTCTTCCCTTACATTAGCATAATAG62110825TTTAAGAATACGCAATAACAGTCCAACTTTACAAAAGAAAAAAGTGGCT
chr2:64117577-64117595
GAATATAACCTATTAAAGGAATGTTATCAC64117577TGTAAGAATATTCATTTACATTATTGTAGTACTCAGGTACTCTTCAGTG
chr2:80130143-80130161
TGTCCTAACCATTCCCCTCTAACATTGCAG80130143TGTAAAAATAGGCATAGACAGTATGTAAATGAATGAGCCTGACTGTGTT
chr2:80987458-80987476
CTGAAAGAAATATAAGGTTTGGGGTTTATA80987458TGCAGGAATAGGCATTAACTTTGAACAGACAAACTCAACTCAATCTCTG
chr2:101868702-101868720
AGTGCAGTATGATTCCATTTCTGCAATGAG101868702TGTAAGACTAGAAATTAACCGTGGTTATGTGAAATGTGTGGTATATTTG
chr2:114322236-114322254
ATGCTGCCTACAAGAGACCCATTTTTAAAC114322236TTTAAGAATAGGCATATACTGAAAGTAAATGGATAGAAGGAGATATTCC
chr2:119182583-119182601
CAGAGAGTGGCTCCATTAATAGGAAATCAC119182583TGTTAGGATAGGAATTAACATCTGCATCCTAAAAGGCTCATCTGGCCTC
chr2:122166318-122166336
TTGATAAATCCATTCATGAAATCATGACGA122166318CGTAAGAATAGGCACAAACTGAGTTAATAAAATGAAACACTACTAGGCG
chr2:141142372-141142390
AAATGAATGCTCTTAGTCCAATGAGATGTC141142372TGCAAGAATAGTCATTATCGTTACTAATCTGCTTCAAGTCTTCTTGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGTAAGAATAGGCATTAAC
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGTAAGAATAGGCATTAAC | format : html | download : | debug : 

0.010 | 0.010 | search_start;
8.155 | 8.145 | search_plus_done; http://172.18.8.78:28018/match?q=TGTAAGAATAGGCATTAAC&k=3&no_gap=1&offset=0&limit=50
8.166 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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