GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-04-30 01:03:57, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:1660131-1660149
TAAAGAAGCCGATGACCCAATTCGGAAGGT1660131GGTTCAAGTGTTCTGTTTGTTTACAAAGGCACAGACCACGACCATGGAC
chr1:4947045-4947063
TGATTGAACTAATTCCACTCCCACCAACAG4947045TGTATAAGTGTTCTGTTTTCTCTGCAACCTTTCCAGCATCTGTTATTTT
chr1:24980113-24980131
TAGTGTCTGGTTATTTTTCAAAACCCCAAC24980113TGTACCAGTGTTCTTTTTTTTACATCATTCTAAAATGAGCATAAGATAA
chr1:26558814-26558832
TTTAAACTATAGATATCTATTACAAAGAAC26558814TGTACAAATGTACTGTTTGCTATTTGTAAATTTAAATCTCAACACTTCC
chr1:28125809-28125827
TGTGTCCTCCTAACCTTAAACCTAGACTAT28125809TGAATTAGTGTTCTGTTTGACTTGTTTCTTTTTTCCATTCCACCTTTGT
chr1:29790954-29790972
GTATGTTTATCTCATACATTGTAGTTTTCA29790954CTTACTAGTGTTCTATTTGATTTTGCTTATAGCTTCTATGTCTCAACTT
chr1:31877238-31877256
GGTTGTACCAGTTTACATTCCCACCAGAAG31877238TGTACAAGTGTTCTCTTTTCTCTACATCCTCACCAATACTTGTAAAAAG
chr1:33942085-33942103
GGGCCTGGTGTGACTGCTAATTGCCTATTT33942085TGTTGTAGTGTCCTGTTTGTGCAGGAACGCAAATGTCTTTGCTTGCTTA
chr1:34843416-34843434
TCATTCTGAACTATCTTGTTTATGTACTTG34843416TGTACTAGTTTTCTGCCTGTCTCTCCAAACTAGAATAAAATCTTCATGA
chr1:45635447-45635465
AAAGGAACAAATAAATAAGAAAACTTCTAT45635447TGTACTAGTGTTCTGTATTAGATGGTAGAATCTGAATACTTTCGTTAGC
chr1:49229249-49229267
GGATTTCTGAATGTGTTGGGGCAAAGCTCC49229249TGGACTAGTCTTCAGTTTGACAAGTTGAGGGCAAAGTCTGACATGCAGA
chr1:55174872-55174890
CCAAGACAAGGGTCTTCAACTCAGTTCAGT55174872TGTACTAGTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTGAGATGGAGT
chr1:60821446-60821464
AGGCCCCAGTGTGTGGTGTTCCCCACCCTG60821446TGTCCTAGTGTTCTCATTGTTCAATTCCCAACTATGAGTGAGAACATGC
chr1:64008953-64008971
GGCAAGGATTTATTTATGGGCTATCCATTC64008953TGTTCTATTGTTCTGTATGTCTGTTTTCATGCTAGTACCACACCCTTTT
chr1:65543148-65543166
CCTTTGCAGTCCCCCTAACTTTCTTCATTC65543148TGTTCTTGTGTTCTTTTTGAGGTCTTTTCCTTCTCATCCAAGCTATGTC
chr1:68553477-68553495
AGGCCCCGGCGGGTGATGTTCCCCACCCTG68553477TGTACAAGTGTTCTCATTGTTCAGTTCCCACCTATGAGTGAGAACATGC
chr1:68559105-68559123
GGGACCCACTGAGTCAGGCGCAGGATATAA68559105TCTCCTTGTGTTCTGTTTGCTAAGACCATGGAAAAGTGCAGTATTTGGG
chr1:73857856-73857874
AAAAATTCTTAAGGTCGAATTTTCCTAATG73857856TGTACTACAGTTCTGTTTTTTCCAACAGAATATTTGATCTGAATAACCT
chr1:76850755-76850773
CAGGTAAAATTAAGCGATAGTGATACAAGT76850755TGGAATAGTGTTCTGTTTTCCTTGTGGACTTGTTATACTTCATTAACAC
chr1:77048951-77048969
AGGAGCCTTTCTTTCTGCCCTATATTTTTG77048951TGTTCTAGTGAACTGTTTGAAACCATAATGGCCGACAAAATGTATGCAA
chr1:83165898-83165916
AAATAAGCCTCTATATGTATATCATAGAGA83165898TGTTTTAGTGTACTGTTTGTACTGTTTGATAATGAACACATCAATAATT
chr1:84885108-84885126
ATGGGAACAATGTTACAGTTAGGAGGAGTA84885108AGTTCTGGTGTTCTGTTTGTGGAGTAGAATGACTATAGCTAATAAAAAT
chr1:85864634-85864652
AATATCCCTAATGCAACTGTTTGTTCAAAT85864634TGTACTAGTGATCTCTTTTATAGAGTTAGTACTGTCTGTTTTAATTTAA
chr1:89228384-89228402
GAGATATATCACATGTAAATAGTTAAAGTG89228384TGTAATAGTGATTTGTTTGACTGACTTTGGAAGCACAATGGAGAATAAT
chr1:90945930-90945948
TGTAATATGTAATATTATATTTTAATGTGA90945930TGTTCTACTTTTCTGTTTGTAGTTATTGAAGTTTTTGTCTTACTTCATT
chr1:96474411-96474429
AGAGGGTTCTGTCCATCAGACCATTAGATG96474411TGTACTAGAATTCTGTTTTTGAGATTTTGGAACAGCTTAAGGTAGGTTT
chr1:97132740-97132758
GAGTGTACTAATTTACATTCCTATCAACGG97132740TGTACAAGTGTTCTGTTTTCTCCACATCATCATCAGTGTTTGTTACTAC
chr1:97764598-97764616
TGCAAGGCTTCCTTAATTAATCCAATGTAC97764598TGTACCATTGTTCTGTATGAGACTGTGACATGGTGAACTGTTTCTGAAG
chr1:99617676-99617694
TTCAATCCAGAAATGTAATATCTGAAAGTT99617676TGCACTAGTATTCTGTTTTTATTTTCCTATTTCTAAAATATACAGCTAT
chr1:104992987-104993005
TTTGAACTAATTTTACACTCCCACCAACTG104992987TGTATAAGTGTTCTGTTTTCTCTGTAACCTCACGAGCATCTGTGATTTT
chr1:108930631-108930649
TTAAAAAGTGGAGGCATGAAGTTATAGAGT108930631TGTATTAGTTTTCTTTTTGCATATTTGTTTATGCAAACTGTTAAGTTCT
chr1:112726101-112726119
TAGAGACATCTTTCCTCCCTGGACTCTTCC112726101TGTCCTCGTGTTTTGTTTGATTATCTCTTAATTGAATAAGGATAATCTA
chr1:148908498-148908516
TATATTATTGGCATCGGCATAGAATCTTGG148908498TTTTCTAGTTTTCTGTTTGTTTTTGAGACAGGGTCTCACTCTGTTGTCT
chr1:153177945-153177963
AAAGGTCCAGGAAGGCTCAGGAAAAGGCAT153177945TGTACTACTTTTCTGTTAGTCCTGTTGCATAATGCTTATGCAGAAGGGC
chr1:156520063-156520081
CCCCCAACCAGTCCATTTACTTCTCTGAGC156520063TGTATTAGTGTCCTGGTTGGCTCTGACCACTCCCTGGCGGATCTCCTCA
chr1:156943240-156943258
CCAAAATTCCATCCTCAGCTCTCTCCTCTC156943240TGTACTGGTGTTCTGGGTGATCTCTTTCGGTCATCCAGTCCCCAGTTTC
chr1:157191918-157191936
GGCTGTACTAATTTAAATTATCAGCAAGAG157191918TGTACAAGTGTTCTTTTTTCTCCACATCCTCACCAATACTTGTTATCTT
chr1:158793535-158793553
TCCAGCTCTGATTTTGGTTATTTCTTGTTT158793535TCTACTAGCGTTCAGTTTGGTTTGTTCTTGTTTCTCTAGTTCCTTTAGT
chr1:163934181-163934199
AGAGGTTTTATTAGTTTCTTCTTTGATAGT163934181TTTACTAGTTTTCTCTTTGTTTTTTGTTCAATCAGTGTTAAGTTGTCAT
chr1:168313932-168313950
TTTCTCTATGCTTCCAAGTTTGCTGTGCTG168313932TGTCCTAGATTTCTGTTTGCCAGAGGGCATGCAAATGAGGAGGTTGCCA
chr1:169749884-169749902
AGGCCCTGGTGTGTGATGTTCCCCTTCCTG169749884TGTCCAAGTGTTCTGTTTATGTGATAGATTACGTTTATTGATTTGTGTA
chr1:170156016-170156034
TGTGTGGTCTTATTTTTGGGTTCTCTGTTT170156016TGTTCTAGTGTTCTATGTGTCTGTTCTTGTACCAGTTCCATGCTGTTTT
chr1:172383053-172383071
GAAGAAAGATTCTGGATGCGAATCATGCTG172383053TATACCTGTGTTCTGTTTGTTTGTTTTGTTTTAACTGCATGATTTTGAA
chr1:174412480-174412498
GGCTATTTTAGTTTTACATTCCCCCAATAG174412480TGTATGAGTGTTCTGTTTTCTCTGCATCCTCACCAGCGTTTGTTACTTT
chr1:174871018-174871036
AGGTTTTTGTGGGGTCTTTTTTGTTGATAT174871018TGTTGTAGTTTTCTGTTTGTTTTTCTTTTTAACAATCAGGCCACTCTAT
chr1:183000785-183000803
TCATTTTTCCTACTGGACTTTATTGACAGC183000785TGTACCACTGTTCTGTTTGGGTTTTAGGGAAAGGTGTTAAAGTTTAGAG
chr1:183846732-183846750
TGCCGATGAGGAGGGCAGGGCTCTGCCTCG183846732TGTTCTATTGTGCTGTTTGTGTATGTCTTTCCCTTTCTCTGTTTCTTCG
chr1:184275896-184275914
TTTTTGCTCTGATTTTATTATTTATTTTCT184275896TCTACTAGTTTTCGGTTTGGTTTTCTCTTGCTTTTCTAGTTTTTAAAGA
chr1:192584314-192584332
TGCTACAACATTTGGCATTCCCATCAAGAG192584314TGTACAAGGGTTCTGATTGTTCTACATCCTCACCAATACTAGTCTTTGG
chr1:198125510-198125528
TGGTGTCAAAGCATTCCTTTTGCAGTTTCG198125510TGTACTAGGGTTCTGGGTGATTTTGCACATATTTATTTCAAAGATCCTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/3/+/nogap/TGTACTAGTGTTCTGTTTG
lang : en | db : hg19 | k : 3 | strand : + | nogap : true | query_string : TGTACTAGTGTTCTGTTTG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
6.217 | 6.207 | search_plus_done; http://172.18.8.78:28018/match?q=TGTACTAGTGTTCTGTTTG&k=3&no_gap=1&offset=0&limit=50
6.228 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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