GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-17 18:37:15, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:4154202-4154220
AGGTGGGGTCTGGCCTCTCACTGGGAGGGA4154202GATTATCCATTTACTTATTCATTATTTGTTCAGCAAATATTTCTTGAGA
chr1:4759368-4759386
TTTCCTCTCTTCAAATTCTAGAAACCCACG4759368GAACAGCCACGTACTTGTTTCCAGAGGCAGAGCCTTTGCTGTTCTCCTC
chr1:37185813-37185831
ATATTCCATTGTATGGCTGTACTACATTTT37185813GATTATCCATTCACTTGTTTAAAGGACATTTGGTTATGGAAAAAGAAAA
chr1:43278460-43278478
AGTTGCAAGAATATGACAGCTGGGTTTGCA43278460GAATGTCCATGTACAAGTTTGTATTTATAAGAAACTGGTAATCTGCCTA
chr1:47567204-47567222
GACCCAATTGTTGTTCAGGAGAATGTTGTT47567204GAATTTCCATGTATTTGTACAGTTTCTAGAGTTCCTCTTATTATTGATT
chr1:48282026-48282044
CAAATTCCCCATGGCTCCCCTCTGCCCTGG48282026GAATAACCATGAACTTCTTCAACATGGACTCTCAGAAGTACTTGGCAGG
chr1:52274264-52274282
TGAGTATTGTGAACAGTGCTCTGTGAACAT52274264GAAGGTCCATGTATTTGTTTGAGTACCTGTTTTCAATTATTTTGGGTAT
chr1:58204349-58204367
GAGTGCATTTCTTTGATTATTTATACTTAA58204349GAAACTCCATGTAATTGTTCAAGTTCAAAATTTGCATACTGCCAGACAG
chr1:59142873-59142891
TAAATGTGTAATAAATACAATACTAATACA59142873TAATACCCATGTACTTTTTTTCTGAAATAAAATATCCTTAAATGATACA
chr1:59564982-59565000
GGCACAGCCCCTGGTACACGATGAACTCCA59564982GAATATCGATTTACTTATTGACTGACACAGACAATGTTATTGCTAGATG
chr1:63889466-63889484
TGTTTTGGCTGTTGTGAATAGTGCCACTGT63889466GAATATTCATGTACAAGTTTTTGTTTGAGTCTATACTCAGGAGTAGAAT
chr1:70308517-70308535
TCTATTTTCAGTATATGAATAACCTATTGT70308517GAATATACATGTTCTTATTTTCACCTAGAAGTAGACTATTTTGCCTTTT
chr1:73950628-73950646
CTAAATACTAATCAAAGCATAATAATTGAG73950628GAATATCAATGCATTTGTTTATCGAACTATTCTTACAATGGAAACAAGG
chr1:78749312-78749330
TATCATGAAGTAAATTAACTATCATGAAGT78749312GAATATCCATCATCTTGTTATCCATTATGTTTGTTTTTGTGGCAAGAGG
chr1:79232809-79232827
AGGGGTGAGTGAATATAACACCTTTAACTG79232809AAATATTCATGTACTTGTGTTGGGAATAATCAGGAAAACAACTCGACCC
chr1:80915108-80915126
AACTCTAAAACAAGCCTAAAGCAAATACTG80915108GAATAATTATGTACTTGTTAAAAGAAATGAACTGTTATTAAACTACTGT
chr1:81582599-81582617
GTATTCCATTGAATAAATATATCACAATGT81582599GTTTATCCATTTACTTGTTAATAGACATGCATGTTGTTTCCAGTTTTTT
chr1:94944277-94944295
ATAATAATAAAACAGAAGTTCTTAAACCAT94944277GAATATACTTGTACTTATTGTTTCAAAGTAATGTCTAAAAAGAGATATG
chr1:95097088-95097106
TTTTCTGGCTATCATGAATAATGCTGCTAT95097088GAACATCCATGTACAAGTTTTTATGTGGACCTATGCTTTCATTTCTCTT
chr1:105989604-105989622
TTTATCCATGAGTCATTCAGGAGCATTGTT105989604CAATTTCCATGTAATTGTTTGGTTTTGAGTGAGTTTCTTAATCTTGATT
chr1:106636421-106636439
TTTTACGAAAGGGCCTTGTCATTATTTACT106636421GAATATGCATGTAATTGATCCAAATACAGAAATGCACATTGCGTATCTG
chr1:109545957-109545975
GCATCATATTTTAAAGCTCTGTTGTTTGGT109545957GCATATCCATGTACTTTTAATAGTAATTTTTCTACTTCATTCTTTTTTT
chr1:110514534-110514552
TTAATCTATTGTGTGGATGAACTGCAGTTT110514534GTTTATCCATTTACTTGTTTAAAAATACTTGGATTATCCATTTTGGGCA
chr1:117002194-117002212
TGGAAATAGATGATGGTGATGGTTGCACAA117002194CAATATCAATGTACTTGATGCCACTTAAAATTGTTAAAGTGGTAAATTT
chr1:157351478-157351496
ATTTTTAAGAAGCTTAGGGAATGATGGGAG157351478GCATATGCATGTACTTGGTTCATGAATATCTTGAACAAGAAGTCCAAAG
chr1:162987987-162988005
GATTCATTTGTTGTTCAGGAGCATGCTGTT162987987TAATTTCCATGTACTTGTGAATTTTCCAAAATTCCTCCTGTTATTATTT
chr1:167195340-167195358
CCAAGTCACAAACAAAACATGCCCCCTTTT167195340GGTTATCCATGTTCTTGTTTCTGATCCCTCCTTAAATGCTAAATGCCTG
chr1:168006792-168006810
ATATGTAAAGCTCTGTTTAATTATGTCTTT168006792GCATATCCATGTACTCTTTTTTTTTGGCAGGTGGGGAAGGTAGCTTTAA
chr1:169353254-169353272
TCTGAGTCTGAGAGATTTATATCCAGCCAG169353254GTATTTCCATCTACTTGTTCCACAGATGGCTAAAAATATAATCTCTTTT
chr1:170246985-170247003
CACCTAGACACAAGTGATGGCAGTATTCAA170246985GAATAGCCATATACTTGATCCTGGCCCTACATTTCTTTGATGACTGATA
chr1:181590193-181590211
CATGGAAAGTTTATTTGGCTGATGCTAGTC181590193AAATATCCATCTACTTATTTAGGAAATATTTATCGTCTGGCATCATTGA
chr1:188614438-188614456
CTATTTAAGTCCTTGGACCATTTTAAGTTG188614438GATTATCCATGTTCTTGCTCTGGAATTCCTTATATGTCTTCATATTATC
chr1:189014615-189014633
TTTTAATCTAATCTGACAAATTATAAAGCT189014615GAATATTCATGTACTGGTAAGATTATAAGGAGAAATGACAATTGTGGTA
chr1:194657867-194657885
TATACTATATCTTGACTGATTTGTTGATTG194657867TAATATGTATGTACTTGTTTAAACTCAGAATTATACACTTAAAATTTGT
chr1:195276579-195276597
CTCTGAGGCCGATAATGTGAACTAACAAAC195276579AAATATGCATGTACTTGTCACCTCTTAGCTTATAGTTTTCTATAGCTGA
chr1:202020681-202020699
TTCTACCCATTGGGCACTGATTGAATCATA202020681TAATAGCCATGTACTTTTTAAAAATAGCAGCTTCTTTGAGATTTAATTC
chr1:202148745-202148763
TGTTGTTTCAGCTTGCCAGGGCAGTTCCCA202148745GGATATCCAGGTACTTATTTTTTTCTTTTTCTTTTTTTATTCTCCTTTC
chr1:207386800-207386818
TGCAAAATGTTTTGGTTTTCTAGGTCTTCG207386800GCATATCCATGTACATTTTAGAAATAGCTTGTCAATTTCTATATAAATA
chr1:209154081-209154099
GGTTCTCTATTTATAGTTCAAAATCACATT209154081GAATATCCTTATACATGTTTCCTTTGCATGTGACTATATCTGGAAGGTG
chr1:213071794-213071812
TTTTTATTTTTAAACTATCAATGTTGTTTA213071794AAATAATCATGTACTTGTTGAGTTCCTGAGGTTTGGAACAAATTACACA
chr1:219258008-219258026
TGCTTTCACAGCACTCATTAGCATCTGACA219258008TAATATCCATATACTTGTTTATTTATTTTTCAGCCTCCCCCGTTTGTCA
chr1:221917150-221917168
CCAAGCCTAGTAGTATACTGAGTAGCAGGG221917150GCATATTCATGTAATTGTTTTCAGGGCAGATCTGAAATCAGGAGGTGTC
chr1:222443736-222443754
TTGGAAGACAAGGTAATCATATGTTCTCAA222443736GAAAATCCATGCACTTGTTAATGGCCCTAAATGTTGAACAAATTAGCAG
chr1:223099717-223099735
TACTTTTGGCAGTTATGAATAAGGCACTAT223099717GAATATTCATGTACAGGTTTTTGTATGAACATATTTTCTGTCTGGTATA
chr1:242792461-242792479
TTTTCATTTTTGGCTATTATGAATGATGAT242792461GAATATTCATGTACATGTCTTTTTGTGAACATGTATCTTCACTTCTCTC
chr1:243468815-243468833
GTATACATGATGAATTTGAGTATATATGAT243468815GAATATTCATGTACTTTTTATAGAATCTATTTATTAGAGATCCCAGTAA
chr2:105532-105550
GACCCAATAGCCGTTCAGGAACATGTTGTT105532GAATTTCCATGTATTTGTATAGTTTCCAAAGGTCCTCTTGGTATTTATT
chr2:4929927-4929945
GTAAGATGCAATACAAATACTTAGGTCAAA4929927GAATATAAATATACTTGTTTTCTCTTGTTGATATGGAATTTTCTTAAGT
chr2:7546864-7546882
CACAGCCATGGAGAGTCTCCATGGGGAAAA7546864GAATTTCCAAGTACTTTTTGTGAAACGTGCAAAGGGGCTTTGCAGGATT
chr2:8224346-8224364
CACCATAACAATCCCATAGTGTGCACCTTG8224346AAATATCCATGTAGTTGGTGAGGAACCAAGGTTCAGAGAGAACATGCAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/AACAAGTACATGGATATTC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : AACAAGTACATGGATATTC | format : html | download : | debug : 

0.011 | 0.011 | search_start;
7.459 | 7.448 | search_minus_done; http://172.18.8.78:28018/match?q=GAATATCCATGTACTTGTT&k=3&no_gap=1&offset=0&limit=50
7.471 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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