GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-20 03:50:01, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:14395729-14395747
TGAGTCTGTAGCTGCATTACACAGTGCATC14395729TTCATCAGTCCAGTATGAGGAGGGGCTGCTTGTCCCTTGGGCATGCCAA
chr1:36761952-36761970
GGAAACAAAGTGAGATCAATGCATAGCATT36761952TTCAGAAGGCCAGCATCATTGTTTTGGAGGACTGGCGTGGGTTCTGTGA
chr1:37676656-37676674
TAGAAAAAGAGGGAATCCTCCCTAACTCAT37676656TTCATGAGGCCAGCATCATCCTGATACCAAAGCCAGGCAGAGACACAAC
chr1:38102797-38102815
TCTTTTTCTCTAATCCTTTTTGTGTCATCC38102797TTCAAAAGGCCTGTATGAAGTTTAGCCTGACCACCTCGAAAGTCAGCCT
chr1:45395918-45395936
CTATGTCTAGAGTTAGGAATTCCAACTCAT45395918TTTATAAGGCCAGCATGATCCTGATGCCAAAACCAGGCAAGGATATTAT
chr1:47454202-47454220
TAGAAAAAGAGAGACTCCTTGCTAAGTCTT47454202TTTATGAGGCCAGTATCATCGTAATACCAAAACCTGGCAGAGACATAAC
chr1:57129864-57129882
ATTTCTTTGAGTCATTGTTCCCATAAACTT57129864TTCATAAGGCCTCAATGATTTCACCATACTTCCATTAATGCTTCGATAT
chr1:59337324-59337342
AGGCTCATGCCTCATTTGAAAGTAGAGAGG59337324TTCAAAAGGGCAGGATGATCCAATTCTCACTTTCTTTCTTTTTATTCCT
chr1:59838227-59838245
TAGAAAAAGAGGGAATCCTCCCTAACTCAT59838227TTTATGAGGCCAGTATCATCCTGATACCAAAGCCTGGCAGAGACACAAT
chr1:60959302-60959320
TAGAAAAAGAGGGAATCCTCCCTAACTCAT60959302TTCATGAGGCCAGCATCATTCTGATACCAAAACCTGGCAGAGACACAAC
chr1:60978463-60978481
TAGAAAAAGAGGGAATCCTCCCTAACTCAT60978463TTCATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACAAC
chr1:64397797-64397815
TAGCTCAGGGGCTGGCACTGAGCCATCGAA64397797TACATAAAGCCAGTATTATTAACCTCAGTTACTGGCCTGTAGCAAGATG
chr1:64959022-64959040
GAAGAAATAATGAGGTGAAAAGCTGAATCC64959022TTCATGAAGCCAGTGTGATGACCCATGAGGGGCTTAATAAATATATAGT
chr1:67656543-67656561
GCCCTTAAATTCAGCGGCCTACTCTGCTAA67656543TTCATAAGGCCTGTTTGTTTTTGCCACAGCTTCTCTACATGCATATTTT
chr1:68493470-68493488
GAAAAAGAGGAAACACTTCCTAAGTCATTT68493470TACATAAGGCCAGTATTATCCTGATGCCACGACCAGACAAAAAGAGTAC
chr1:69177657-69177675
AAAGGAGACTGGGCCATCTCCCTAACTCAT69177657TTTATGAGGCCAGTATCATCCTGATACCAAAACCTGGCAGAGATACAAC
chr1:70567372-70567390
TTTTCCAAAATTACTGTGAAAAGCAAACTT70567372TTCATAAGCCCATTATGAGTACTTCTGGAATAATCACTTATGACTTGTA
chr1:70963097-70963115
TGAGGTGTAAATATTCTCACGATGGCTGAT70963097TTCAAGAGACCAGTATGATATCACTGAATGTGGAGTTGGAAGAGGTGCT
chr1:74565236-74565254
TAGAAGAAGAGGGAATCCTCCCTAACTCAT74565236TTTATAAGGCCAGCATCATCCTGATACCAAAGCCTAGCAGAGACACAAC
chr1:77313021-77313039
ATTCTGTTCCATTTAGTTCATATGTCTTTT77313021TTTATAATGCCAGTATCATGCCATTTTGATTAATGTAGCTTTGTAATAT
chr1:82029206-82029224
ATAAACAATGGACTTGTTTTATTTGTCTTA82029206TTAATATGGCCTGTATGATGTAGATGGCATTATTTTATATGTACTTTGG
chr1:87283648-87283666
TAGAAAAACAGGGAATCCTCCCTAACTCAT87283648TTGATGAGGCCAGTATCATCCTGATACCAAAGCCTGGCAGAGACACAAT
chr1:88507463-88507481
TAGAGGAAGACAGAACACTTAGTAATTCAT88507463TTTATGAGGCCAGTATAATCCTAATACTAATAGCTGACAAAAATTGTAA
chr1:88902673-88902691
AAATAGAGGAGGGAATAGTTTTAATCTCAT88902673TCCATAAGGCCAGTATTACCTTGATACCAAAACCAGAAAAAGACACATC
chr1:89623537-89623555
TAGAAAAACAGTGAATCCTCCCTAACTCAT89623537TTCATGAGGCCAGCATCATCCTGATACCAAAGCCGGGCAGAGACACAAC
chr1:91911053-91911071
TAGAAAAAGAGGGAATCCTCCCTAACTCAT91911053TTCATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACAAC
chr1:95170962-95170980
TACACATCCTCTCACTGAGGCTTCTACAAC95170962TCCATAAGGCCAGTTTTATTCTTTCCAACTCACCTGAATCTGGGAGGAC
chr1:95304822-95304840
AGTACCTTAGAACATGTAAAGTTAGAACTT95304822TACATAAGCCCAGTATGAAGTCAAAAGATTTAAGTATGATAATTTTAGA
chr1:97713562-97713580
TAGAGGAAGAATGAGCCAATCTCAACTCAT97713562TTTATAAAGCCAGTATAATCTTGATATTGAAACCTGACAAATAAACTAA
chr1:98647914-98647932
ATATTATCTCTTTTAATCCCATTTAATTTA98647914CTCATCAGTCCAGTATGATACGCATTAGTATGTGGTTGAGCTGGGAAGT
chr1:100053001-100053019
AGTCAGAAAGCTTCAGTATGATGAGGGCCA100053001TTCATAACTTCAGTATGATGAGGGCCAGCTGACAAAAGGTGATATCTGG
chr1:101036547-101036565
TTGAGGAGGAGGGACTCCTCCCCAATTCAT101036547TCTATAAGGCCAGTATCATCCTGGTAACAAAAGCTGGCAGAGACACAAC
chr1:101625928-101625946
TAGAGAAAGAGGGACACCTCCCTAACTCAT101625928TTAATGAGGCCAGCATGATCCTTATACCAAAACCTGCCAGCGACACAAC
chr1:101735786-101735804
TATATGAGAAGGGAACTGCCCCAAATTTCC101735786TTCACAAGGCCAGAATTATATTGACATCAAAGCCTGTCAAATAAATTTT
chr1:102689126-102689144
GCCTTGGAGAGCCAGGCACAGGTGAGAAAC102689126AGCATAAGGCCAGTATGTTGTATTGAACTACAAAGGGAGAGAGTGGTAG
chr1:105962721-105962739
TGAGCCACCGTGCCTGGCCGGTTTATTTTT105962721TACATAAGGCCAGTCTGTTAACACTCGGAGAGAAGAGGAAACTATCTTA
chr1:107399483-107399501
CAGAAAAAGAAGGACTCCTCTCTAACTGAT107399483TTTATAAGGCCAGCATCATCCTGATACCAAAACCTGGCAGAGACACAAC
chr1:107783306-107783324
CTTCATTAATACCTGGCTATCTGTTGGGTG107783306TTCATGAGTCCAGTTTGATTTTCATTGTTCAGTTAGTGAAAAAAGGTGA
chr1:109108050-109108068
TGCAGTACATGACTGTATTTCTGAAGATGT109108050TTCAAAAGGACAGTATTATTGTATTTAAATCTTTTCACCGTACTTCCTT
chr1:111378363-111378381
TAGAAAAAGAGGGAATCCTCCCTAACTCAT111378363TTTATGAGGCCAGTATCATCCTGATACCAAAGCCTGGCAGAGACACAAC
chr1:117763869-117763887
TAGAAAAAGAGGGAATCCTCCCTAAATCAT117763869TTTATGAGGCCAGTATCATTCTGATACCAAAGCCTGGCAGAGACACAAC
chr1:120028146-120028164
CGAGGCCAGTTTCCCAAGGGCTTTATTGGC120028146TTCATAAGTCCAGTTTGATTCCTTGAAGGAAGGCACACCATTCCAGTCA
chr1:120065920-120065938
TAGAAAAAGAGGGAATCCTCCCTAACTCGT120065920TTCATAAGGCCAGCATCATCCTGACACCAAAGCCTGGCAGAGACACAAC
chr1:121222547-121222565
CAGAAAAAGAGGGAATCCTCCCTAACTGAT121222547TTCATGAGGCCAGCATGATCAGGATGATTCCTGATACCAAAGCCTGGCA
chr1:151458871-151458889
TTTCCTCACTTAAAATGGAAATGATAATAC151458871TTCATAAGGTCATTATGAAAATCAAATGAGGTAATATTTGTAAAGTAAT
chr1:159511531-159511549
TAGAAAAAGAGGGAATCCTCCCTAACTCAT159511531TTCATGAGGCCAGCATCATCCTGATACCAAAGCCTGGCAGAGACACACA
chr1:160485293-160485311
TTGAAAAGGAGGGACCCTTCCCTAATTCAT160485293TTTATGAGGCCAGTATCATCCTGATACCAAAACCTGGCAGAGATACAAC
chr1:162719442-162719460
TAGAAATACAGGGAATCCTCCCTAACTCAT162719442TTTATAAGGCCAGCATCATCCTGAAACCAAAGACTAGCAGAGACACAAC
chr1:163816285-163816303
CTTAATCCATGTTCTGAGTTGATTTTAAAA163816285TTCAACACGCCAGTATGATGAAAGGCTGTAAATATTGTAAGCATCCATC
chr1:164167357-164167375
TATAAAAAGAGGGAACCCTCCCTAACTCAT164167357TTTATAAGGCCAGCATCATCCTGATACCAAAAGTTGGCAGAGACACAAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/ATCATACTGGCCTTATGAA
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : ATCATACTGGCCTTATGAA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.285 | 6.274 | search_minus_done; http://172.18.8.78:28018/match?q=TTCATAAGGCCAGTATGAT&k=3&no_gap=1&offset=0&limit=50
6.297 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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