GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-17 15:35:35, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:10495689-10495707
CTTATGTGTGGCCCTCCTCCCCGGTGAAAG10495689ATATTAATACCTTTACTTGTTATTTATTAGCTGTGGGAAAAAAAAATGA
chr1:55379064-55379082
TAGGAGTACTATGTACCTGGGTCAGTTGGG55379064AGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCACC
chr1:67716306-67716324
ATAATCGTTAAAGCCATTTTTATTTCCCAA67716306AGATTACTAAAGTTACTTGAACTAAGACATTACAGTTTTTATTTTTTCT
chr1:152766523-152766541
AGGGTTGTAGATATGGAAAGAACAAAACAA152766523AGATTACTAACTTAACTTGTTACTGGTTATAGAACACATACAAAAAATT
chr1:166587141-166587159
TAAATTGCATGTCACAGGGATTTGGTATAC166587141AGATTATTACTTTTACTTGTGTGTTGGTGGGGGAAGGGTGGCTCTCTGC
chr1:203937345-203937363
CAATAATCTTTAAAACTTTTTATTTCCCAA203937345AGATTACTAAAGTTACATGAACTAAAAGGCATTATAGTTTTTATTTTTC
chr1:228306679-228306697
AATAATTTTTAAGCTGTTTTTATTTTCCAA228306679AGATTACTAAAGTTACATGAATAAAAGGCATTACAGTTTTTATTTTAAA
chr2:12425208-12425226
TACTGGTCTAGAAATAGAGGTTAAATGCAA12425208AGATTACTATATTTACTTGAGAAAAACACTATTTTCAAATAAAGCTTCC
chr2:29134484-29134502
CCAGCCTCTTAATAACCTCTTTTGTTATTC29134484AGGTTCCTACTGTTACTTGCCTTTTTTTTTTGGAGACAGAGTCTTGCTC
chr2:58931751-58931769
AAAAAAATGGACTTTTTTTTGACACTTGCT58931751AAATTATTACCGTTACTGGATTAACTCTGCATGCTGCTGGTTTACTGGG
chr2:84695247-84695265
ATAGTTTTTAAAGCTGTTTTTATTTCCCAA84695247AGATTACTAAAGTTACCTGAAGTAAAAAGCGTTAGTTTTTATTTAACTT
chr2:109300490-109300508
CTTTATTTTTTCTTTTCTATGCAAGATAAG109300490AGATTACCAACATTACTTGTCTTGATCTACCCATATTTAAAGCTATATC
chr2:144501926-144501944
AGTGTTTGGTTTTCCTTATGGTCATCAGCT144501926GGATGACTACCGCTACTTGGCTGAGAAGCACTTCATCCATAAAGAAAAG
chr2:146532629-146532647
AATATATCCTGATTGCTAATGGGAGTAATA146532629AGATTACTACCCTGACTTCAGAAATAAATGGAAGTAGAACCCTGAATGC
chr2:162109779-162109797
AAATTGTCAATTTCTCAAGTGTTTTCATTA162109779ACATTTCTACCTTTACTTGTAGAAAATCTTCCTCATGGCCGGGCGCGGT
chr2:162847248-162847266
GACTATTAATGCTGTCCAGGATGTGAACAT162847248ATATTACTACCGCTTCTTGATATACAATTCTGCAAAGATTGATCCAGCT
chr2:174329156-174329174
AATTGCATTTAAACTCAAGAAAATTACAGT174329156AGATCACTACAGTTTCTTGATGTACTTTCTAAAGGGTTTTCTGTCACTT
chr2:197382351-197382369
GTCAGTGACATTGTTTTGTTTTCACTGTAA197382351AGATTGTTACAGTTACTTGGTCTTAATCATATAATAATACTACAGTTAC
chr2:199609087-199609105
CATGGACTGGCCACTTAATTGTTGTGAAGG199609087AGATTACTGCCATTACTTTATAGATTAAAAAAAACTGAGGTTTAGAAAT
chr2:216530656-216530674
CACAGTTCTTTTTTATTGATTTTGGTGGGA216530656AGATTTCTACCGTTGATTGTATTGTGTTAGTCTTTTCATCAAAGGACAT
chr3:5212917-5212935
AGTGCTTTAGTTAAACCGGAAGCCTCTTGA5212917AGATTAATACTGTGACTTGAGACTTTAATGTAGCCCAGTGTCTAGTGTG
chr3:14119443-14119461
ATAATCTTTAGAGCTGTTTTTATTTCCCAA14119443AGATTACTAAAGTTACATGAACTAAAAGGCATTATAGTTTTTATTTTGC
chr3:46378222-46378240
ACTATATTAGGTCAGTGCAACAGTAATTGC46378222AGTTTACCACCATTACTTGTTTTTTTTTTTTGGTTTTTTTTTTTGAGAC
chr3:82785962-82785980
CAAAGTCACCAATAGCTGAGTGGCGAGCAT82785962AGATTACTACCCTTGCTAGATAATAAAGAGGCACTCCCTCACCTCCCAT
chr3:96387275-96387293
TAGGGGTGCTATGTACCAGGGTCAGTTGGG96387275AGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCACC
chr3:96605329-96605347
TTGCTTTAAAGTTTGTTTTGTCTGATACAA96605329AAATAACTACCCTTACTTGCTTCTGGTGGCTATTTGTATGAAATTCCTT
chr3:119112020-119112038
CCAGAATTGTGTGTTTGCTTGTGACCACTG119112020AGATTCCTACCGATTCTTGCATCTGTTTGCCCCCACCTCTGCCTTTAAT
chr3:130371516-130371534
CCCAATGTCTGATATTACAGAAGAGAAATT130371516ACATTACTACCTCTACTTGCCGCCTTCTTTCTTTTATCCATTCTCTTCC
chr3:145038880-145038898
TCTCTGCTGCAAGGCATTCACTGGGTCTCC145038880AAATTACTACCCATACTTGTGTTAGGATTTGTGTGCATAGAGGATCTCT
chr3:147063734-147063752
CTGCACTACCCTTATGCTAGCAGATGTCAC147063734ACATTATTGCCGTTACTTGTATAATGTACTGTCTTTCCTTATATTGAAA
chr3:158983963-158983981
TTTTACAGGTGATGAAAAAGAGACTTAAAG158983963AGATAACTACCTTTTCTTGGGCCACCCATTGGGTTGGAGCTCCATATTT
chr3:191308240-191308258
TATGGGAAGGCTTGGAGGTTTGGAGGTTAC191308240ACATTACTACTTTTACTTGTTGGCTAGGAAACTATCACGTGGTCACACC
chr4:7090380-7090398
ATAATTTTTAAAGCTGTTTTTATTTCCCAA7090380AGATTACTAAAGTTACATGAACTAAAAGGCGTTACAGTTTTTATTTTGC
chr4:12520502-12520520
GCTCTCTCTCCATTTCTATTTTTTAGTTTG12520502AGAATACTACCCTGACTTGAAAAAGATAGCTTTAAACATCTTTTTGCTT
chr4:18189460-18189478
GGGCTGCTTGACTGTTTTCCATTCTCCTGG18189460AGATTATCACCGTTATTTGCTAAACTCCTGGACAGACTCTCATTTCTTT
chr4:53454916-53454934
TGTTTTACAGGTTAGGAAAAACTGAAGTCT53454916AGATTTCTCCAGTTACTTGTAAGAAGCCTTCTTTGGTGTCTGGGCCAAA
chr4:114948620-114948638
TCTCCATCTCTACTCTCCTGTCTCCAGTTC114948620AGATTACTATCCTTTCTTGCCTGGAAGATAGGTTACTAACTTGTTTCCT
chr4:139544973-139544991
TAAGGGTGCTATGCACCCAGGTCAGTTGGG139544973AGATTACTTCCTTTACATGTTTTTCTCTTGCCTGATCTTGAACCCCACC
chr4:143765922-143765940
GCACCTTATGCGCTGCTTTATCATTGAGTC143765922AGATTACTACCATTTCTGGTCCAGAACTCATTAAGAAAAGTCCTTTTTC
chr4:145743385-145743403
AAATAAATCAAGAGACACAACATGTACTCA145743385AGATTACTAAGGTTTCTTGCCAGCAATGGTGGTTCACACCTATAATCTC
chr5:21837038-21837056
ATGGCATGTATCATTTCTATTTCTGAAACA21837038ATATTACTACCTTTATTTGAAGACCGTTTTCTGGGTTATCTGTAGGATC
chr5:25241569-25241587
GTGCAGTAGGAGTATTTTTTAATATTTTTC25241569AGATTACTAATGTAACTTGTCTAGGGTGCGCCGGTGAAAAATCTTTGGA
chr5:56782470-56782488
TCTCTCTGGAAAAGAGAGATAAAATGGTAA56782470AGATAATTACCGTTACTTCTCTCTGGAGAAGTCTCAACATATGGCTTTA
chr5:56817454-56817472
TAGGGGTGCTATGTACCCGGGTCAGTTGGG56817454AGATTACTTCCTTTACGTGTTTTTCTCTTGCCTGATCTTGAACTCCACC
chr5:107911872-107911890
TAGGGGTGCTATGTACCTGGGTCAGTTGGG107911872AGATTACTTCCTTTACATGTTTTTCTCTTGCCTGATCTTGAACTCCACC
chr5:172465648-172465666
ATGCCTAGAAAAGAGACAGAAAAGAGAACA172465648AAATTACTAGCGTTGCTTGCCTCTAGATGGTAATTACAAGTCATCTTAT
chr5:174238151-174238169
ATGGCTTTTCTGGTTATTCTTAGAGGCTAG174238151AGAATACTACTGTTACTTTAAATCAGAGAAGAGAGTCCTAGTGCAAAAA
chr6:11093374-11093392
TTTCAATTTTGGGTGGAGATACAGTAGTTG11093374AGATTACTACAGTGTCTTGTTTCGTAGAGGTGTAAGCCAGTGCGGCAAA
chr6:24329029-24329047
TGGGCTTAGACACTGTGAAGCAATTACTAC24329029AGGTTACTACAGTTATTTGTACGCATATCTACGCTTGCTGGACAACAAG
chr6:26204813-26204831
CTTCATTTAGGTCCGAATTCCCGGCATATA26204813AGAATACTACCGTCGCTTGTTTTTCAGATTTTTGCGGCTATTTTCGTTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/CAAGTAACGGTAGTAATCT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CAAGTAACGGTAGTAATCT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
4.280 | 4.268 | search_minus_done; http://172.18.8.78:28018/match?q=AGATTACTACCGTTACTTG&k=3&no_gap=1&offset=0&limit=50
4.292 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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