GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-19 05:57:56, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:14300762-14300780
GCAGCTGCCTAGAATAAACCACATTGTACA14300762AACAATCTAGGCATAATGGGCCACTCTTATCATTTAGGGAAAGTTTATA
chr1:34169214-34169232
TAAGCAGAAAGCTTTCTATACACAATTACA34169214AACAATGTAAGCATAATTTCTATGAATATTCCTGCATGTCCGCTTGCAC
chr1:57753233-57753251
CTTATTTGCAGGTTATATGCTGTCTCCATA57753233GAAAATCCAAGCATAGTTGGAGAAAGTATTAGTAATAAAAGAGCATAAC
chr1:63826696-63826714
GACTGGTGTGCATCTCCAAGAGCTTCCTGG63826696AACCTTCCAAGCATAATCGATGTGGCTGCTTGATTACTGTAGTAGCTAG
chr1:64757972-64757990
GGTAGGGACACAGAGCCAAACCATATCATG64757972AACCATAAAAGCATAATTGAAATGAAAGTTATTATATTTTCATAGGTGC
chr1:66075467-66075485
AAATAAGAAAATCCTTGACTTGAAGGAGTT66075467TACAATCCAAGCCTAATTGTGACTATTTCTGAAGGCAGAGAACACAGAA
chr1:71463206-71463224
GCAGACTTTCATATTCGATGAAGTCAATCC71463206AATAATCCAATTATAATTGTTATTAATGACCACCAGATATTCTGATTTA
chr1:73762055-73762073
GTGGGACAATTTTGAGGCAATATAAGACAG73762055AACAATCCAATCATGAATGCACATTTTATTGGCTTTTCCCCTTCCTTCT
chr1:76163125-76163143
CATATAATCAGAAGGTATAAGAATCAAGAT76163125ATCAATCCAAGTATTATTGACTTCTAAGCTTGTGCACAAAGTTAATGCA
chr1:80332482-80332500
TAAGAAAATGGGTTTGGAGACAGGACTAGA80332482TACAATCAAAGTATAATTGGATGTCACCACAGTCTTATCACTTCAGGTA
chr1:81014013-81014031
TAGAACTCTAGAAAATAATCTAACATGTGC81014013AACAATCCAAGGATCATTTAATGAAGAAAAGCAGTTTAATCTTGTTTAA
chr1:83899253-83899271
ATTCCATCAGTCAATTAGATAGCAAAGTTA83899253AAATATCCAACCATAATTGGGATATACCTATTTCTCTTTTATGTTTTAT
chr1:93615803-93615821
AGTGTGTAAAACTTTAGGATTGTCCCCCCA93615803AACCACCCAAGCATAATTCCCTTGAGGTCCATGCAATTTGTTACATGTA
chr1:98736481-98736499
TATCATAGAATTATTCTGAAAGTTAAATGA98736481AATAATGCATGCATAATTGCTTAAATAACTACAGATATACTGTTTAAAG
chr1:107668089-107668107
CACTTCAACAAGACCCAAAAAATCTCACAT107668089AACCATCCAAGCAGAATAGTCCAGGGCTAATATGGTGGTCTGTTACATC
chr1:112697312-112697330
CTCAAGCATTTATTCTTTCTTTGTGTTACA112697312AACAATCCAATCATACTTTTTTAGTTATTTTTAAATGTACAATAAATTG
chr1:120277010-120277028
CCTGCTTCCCTCAGCTCTCAAGCAGACAAG120277010AACAGTCCCAGCATCATTGTGTGGTCATGAGAATTAATTAAGCTGATCA
chr1:143900671-143900689
TTGAGTCCCAGATAAAAAAATCAAATCTAC143900671AAAAATCTAAGCATAATTGGAGGATTTAAAGACCCTTGACAACCTAGCT
chr1:149454079-149454097
TTGAGTCCCAGATAAAAAAATCAAATCTAC149454079AAAAATCTAAGCATAATTGGAGGATTTAAAGACCCTTGACAACCTAGCT
chr1:152841665-152841683
CAAGTGATAATTATCTTCACAAATGTTGTA152841665AACAATATAAGCATCATTGTGATAAAAATAACACATACTAATTTTATTC
chr1:155212362-155212380
TTTAAATGATCTCAGTGAAGTCTTTCTAGA155212362TACACTCCAAGCAAAATTGATCATTTCTTCTTCTAGGTTCCTCCAGTAA
chr1:161500066-161500084
CAGTGTTGACCGATCGAAAAGTCTTTCTCT161500066AAGAATTCAAACATAATTGCTGGTTGGTTCAAATCAGGAGGAAAAGTAA
chr1:161581670-161581688
CAGTGTTGACCGATCGAAAAGTCTTTCTCT161581670AAGAATTCAAACATAATTGCTGGTTGGTTCAAATCAGGAGGAAAAGTAA
chr1:163953661-163953679
TGTAGTTATCTAAGGAAGGGCTGAGGAAAA163953661AACAATTCAAGCAAAAGTGAACAGCCAGTACAAAGGCCCTGAGGCAGGA
chr1:171008444-171008462
ATTTATGAAATAAGTATCTGCAGTTGTAAG171008444AACAATCCAAATATAACTGTGGTTTAAACAACATAATAATTTATTTCTC
chr1:178439998-178440016
CTGTCAGGTGTGGACTAGATTGCTTTCCCT178439998TACAATCCAGGCAGAATTGAAATGTCCGAGCATCTTTTGTCAACTGAAC
chr1:189874683-189874701
CTCCTGGTCCTACCCTTGACATGTGGGGAT189874683TACAATTCAAGAATAATTGTGAAGTGCCCCTGCCCACTCCAATATCTCA
chr1:190520357-190520375
TATGTAAAATGAGACATTGGTAATTTTCAA190520357TACAATCAAAGGATAATTGCACTGACAATAATAGGAAAGGAAGGCTTTA
chr1:191563091-191563109
AAGTCATATTATTATACATAACAATGAATG191563091AACAATGGAATCATAATTGGAACAATCTCATTTATTATTTATAATCTCC
chr1:192395482-192395500
GAAAGAATTAAAGAATAAAGAATAAAAAAG192395482AACAAACAAAGCATAAGTGACATATGGGACATGTTAAGAAACCAAATAT
chr1:193882809-193882827
GAGCAGACCTAAAAATAGGGGTACTAGGAA193882809AAGAATCCAAGAAAAATTGGATGCCCTGATGACAACTGTTGAGCTGCTA
chr1:199264012-199264030
ATCTGCGAGTGGATGTACTATTGCCACTAG199264012AACTATCCAAGCCTATTTGGACATATGCAGTACATATGTCCTTAGTATA
chr1:202899691-202899709
ATCCCCTCAAGCGTTTATCCTTTGTGTTAA202899691AACAATCCAAGTATACTTTTAGTTATTTTAAAATGTACAATTCAATTAT
chr1:213196583-213196601
GTAGGGAGGAACATTGATTGATTTTTAGAA213196583TACCATCCAACCATAATTGCATACCTAGTCAGGGATTGAGACAATGAAG
chr1:215882336-215882354
AATTCAAATTTATGATTCAAATATAACACT215882336AACAATACAAACATAAATGAAGAACAAATAAATGGCCAGTCTGATTCTC
chr1:216105547-216105565
TATTGAAATCAAGGAAATGGCAATAATGAT216105547AACAATCCAACTATAATGGAAAAGTAAATAGCATATAGAACCTTCTCTG
chr1:216711372-216711390
CCCTTCCTTTCTGCAGGCAAATACCTCTTA216711372AACAATCCAAACATATCTGAAATATTTTTCTCTAAGTATTTCTTTAATA
chr1:219120833-219120851
TTTAACTCTTTATGGGTAACAGGGTAAAAG219120833AACAGTCTAAACATAATTGCAGAACAAGTTTGTATAAAACACACCGTTA
chr1:234950531-234950549
AATGCTCACATACACCTGTGAGTGTCTCAA234950531AACAAACAAAGCATAATCGCCTTAGAGCAGCACTGTCTCATAGAAATAT
chr2:643918-643936
AGGTCACCACATCTTGGTTCTCTTGTTATC643918AACAATTAAAGCATGATTGGCATTTATGTCATTTTAGGTAATTTACCAA
chr2:971361-971379
GACAAAAAATACCTACTGTGTTTTAAACAA971361AAAAATCTAAGCATAATTGAAGACTGGAATTAATTGTGTGTTCATCCTG
chr2:11782608-11782626
TCCTAGACATTTATAAGCACTCTAATGGAT11782608AACAATCCAAGAATAAATGATTGTAAAAGATGATGCCGAAGAGTTGATG
chr2:14358144-14358162
ACAGGCATACTTGGTGTGACTTTTATTAAA14358144AACAATCCAAGGATAAGTGGTCCTGCATGGTTCAAAACCATGTTGTTCA
chr2:19491184-19491202
GTTAGTCAGGGTCCTAGCAGAAAAAGGTAA19491184CACAATCAAAGCATTATTGAATAGGTCATTTGGGGAGGGATACACTCCA
chr2:19831956-19831974
ATTTGCAAAAAAAAAAAAAAAAGGAGTTGT19831956ATCAATCCAAGGATAATGGAAATTCTGCTGCTGACATGGCTGCCCACTA
chr2:36365376-36365394
GTTGGGTTCCAATGCCTGGATGGATATTAA36365376AGCAATCCAAACATGATTGGAATTCACCTCAAATTTTCTCTGAGGAAAT
chr2:40790127-40790145
GGGAAGAAAAACTCAGTGAGAAAAGGATTC40790127AATAATACAAGCATAATAGATACTAACCAAAAATAGCACAGCGAAGTAG
chr2:40878926-40878944
AGACTCTGTCTCTACAAAATATTAATATAA40878926AAAAAGCCAGGCATAATTGTGCATGCCTGTATTTCCAGCTACTCAGGAG
chr2:41368369-41368387
TAAGATATGCCCATTGCTTTCAAGATAATC41368369AAAAATCTAAGCATAATTTTCCAGTCTTATCATTCTCTCATAGGCAATG
chr2:46031812-46031830
CATGGGGAAGGAACATGGTTCCACTCAGAA46031812AACAATTCAACTATAATTGAGAAAGAGGAGAGGTTGCTGTTCGTTCTCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/CAATTATGCTTGGATTGTT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CAATTATGCTTGGATTGTT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.964 | 6.953 | search_minus_done; http://172.18.8.78:28018/match?q=AACAATCCAAGCATAATTG&k=3&no_gap=1&offset=0&limit=50
6.976 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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