GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-17 13:43:20, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:17060732-17060750
TGAACGGATGAGCCATCGCTCTTGTCCCAC17060732ACGTTCTGTCCAAAAGGTGCCCTCCTCTCTGCTTGCTCGGGGGCCTGCC
chr1:17607719-17607737
ATGATTAAGAATGCCCCCTGCTCTCAAGGG17607719ACTTTCAGTCTAATCGGTTGAGAGGGAAACTCTTCCCTTCTCTGAGGAC
chr1:37816018-37816036
TTAGAGCCTCATGTTCTTTCTGCAGGCCCC37816018ACTTTAAGGCAAATAGGTGAGGCCCAGGACCCAGGGCCGACTCACCAGG
chr1:49407057-49407075
TCTGGCACTGGGATACAGGATTGGCCTGTT49407057ACTTTCATTTCAATAGGTCACAATTTTCCAGCTCTTAAGATAATGGCAA
chr1:54785225-54785243
CTCAGGACTCAGCCTTACCCACTCAGTGTC54785225ACTTTCAGCCCCACAGGTGGGAAGGTCCTCAGCATCCCCTACCTCCACG
chr1:63275950-63275968
TATGAAATATACAGTCTTTACTCTCAAGAA63275950ACTTACAGTCCAACAGATGAGAGACATTAAATAATTAGAAAAATATTCA
chr1:65451324-65451342
ATGCCCAGCTGGTTGAGAGTGCCAAAGACA65451324CCTTGCAGGCCAATAGGTGAGATGTCTCCGATGTACGTGGGCACAAAAC
chr1:91274414-91274432
CTCAATCTCATGGTTTCAATTTTTATAACA91274414ACTTTCAGTCTAATGGGTATTCACTTGCACTAGAACAATCCCAAGATGC
chr1:92020567-92020585
AGAACTGCAGAAAGTTAGTTCTTAGTACTA92020567ACTTTCAGTCCCTTATGTGACCTTTCTGCAAAGATCCAGTCATCCAGAG
chr1:177267167-177267185
ATTTATACAGCACTATTCACAATAGCAAAG177267167ACATTAAATCCAATAGGTGCCTATCAATGGTAGATTGGATAAAGAAAAT
chr1:182410700-182410718
AGCCTTTTGCTTCTGCCTTTGATCAGACCT182410700ACTTTCAGTTCAATGGGAGGCTTCGAGGGTCATCTGTACCCAGGGCTGT
chr1:186407166-186407184
CAGAGGTCATTGCTGATCTGTATCAGAACC186407166ACTTTCAGTGGAATAGTTGAGGCAGATAGGTGGAAAAATAAATGGAAAG
chr1:191539858-191539876
AAATAGTCAAACTTTTTGCGAGAAAAGTTA191539858ACTGTGATTCCAATAGGTGGTTCAAATTAAAGAGTTTAACTAACTGTCT
chr1:204981409-204981427
ACGCCAACAAGGGGGTCACAGAGAAGAGAC204981409ACTTTCCATCCCATAGGTGTGTACGGCGTGTCTTCTCTGCTCAGGGCAC
chr1:206803374-206803392
AACTTTCCTCTGAAAGTCACTGTTTTCCTA206803374ACTTTCTGTCCAATATGTTTCTACTGCTGTGTCTAGGAGCCTCAGGCCT
chr1:214756442-214756460
AGCTGTATTCCTGATTTAGGGAATTCCTTC214756442ACTTTCATTCCAAGATGTGAAGACACGTGGTCATAGAGCTCAGGAGAAT
chr1:237622252-237622270
TTTATTAAAATTAAACACTTGCAGTTTGGA237622252ACTTTCAGACTAAAAGGTGACATGCGGCTGCCATTTCTGAGAACAGGAC
chr2:21976418-21976436
TGAAACACAGCTTCCCCATCACTTTGTGAG21976418ACTTTCAGTCTAAGAGGTGGTGTATATTGAGACAAGAAATGGTAAAAAG
chr2:25240609-25240627
TCCCAAAGTGCTGGAATTACACTGGTTTTC25240609ACTTTCAGTGCAATATTTGATAAATTACATGAGATATTCAACTCTTTAT
chr2:29912245-29912263
ATCCTGAGAGAATTTTCCCGCAAAGTCTGC29912245ACTTGCAGTTCAAAAGGTGACTCAGGTCCCTGCTACTCCTGGGATACAG
chr2:39051511-39051529
CCAGGGGCTGGACATGAGGGGAAAATGGAG39051511AGTTGCAGTCCAATAGGTATAAAGTTTCAGTTTTGCAAAATGAGTAAGT
chr2:41392714-41392732
ATCTGATTGTTCTACTTCCTCCCTCAAGGC41392714ACTTTCAGTCCACTAAGTTCTAAGGCAATATTTTCTACTTATGATAAAT
chr2:58355060-58355078
TACTTAGACTTTTCTTTTTCTCCCAATTCC58355060TCTTTCAGTCCATTTGGTGAATTGGGCTAGTTAATTTTATTCCAGTTTG
chr2:73853025-73853043
CACACCGCAGCAACATTCTACCTCAGCCAG73853025AGTTCCAGGCCAATAGGTGTGGACTTTGACTTCCAGATTCCTCTGGCAA
chr2:76611961-76611979
TATTTTCATAATACTGTCATAAAGTCACTC76611961ACATTCTGTCCAATAGGAGACAACACATTTTTTATTCCCAGTTCCCGCA
chr2:80648492-80648510
CATGGATTTCAAGTTGTGTGATAAACATCT80648492ACTTTCAGTCCTATTAGTGCCTTTACTTCATTTGCAGGACATATTTGAA
chr2:111592510-111592528
TGATCTCCATGCTTTTCAAGCAGGGTTGTA111592510ACTTTCAGTCCAAAAGGTAGTGCCTGGGTCAGGCTCTTTGTGGGGAGCA
chr2:111931817-111931835
AGAAACTCTTCCCAGTGTTACTCGACCATG111931817ACCTTCAGGCCAATATGTGTCACTTATTTCTGCCAAGACGCCTGCTACA
chr2:123547899-123547917
GCAGAGTTTTTGAGTGATTTTCTGCATTGC123547899ACTTTCATTCCAATAGTTCTGTTGTACCCTCTCATTAAATAATGGAAGC
chr2:133706130-133706148
CGGCCATTCAGAGCAAAGGTTTGGGGCCCT133706130AATTTGAGTCCAAAAGGTGGAATGGCAAATGGTAACAAGCTCTTGGAGA
chr2:142751271-142751289
GTGACTGGACCATTATAAAGTTACACACTA142751271AATGTCAGTCCTATAGGTGAAGGTCTTCCTAAAATCAGTTTATATTTCC
chr2:143555359-143555377
CATCTCAAAAAAAAAAAAAAAAAAGCAGAG143555359ATGTACAGTCCAATAGGTGGGTAGAAAGCAAGGATCAATAGACCAGAAG
chr2:143728724-143728742
TCCAAAAAATTAGAAGTTTGACAACAATGG143728724ACCTTCATTCCTATAGGTGGCAACACTGGGTAGCAGCTCTGTCCCTTAG
chr2:144028569-144028587
AGTTATGTTTTTCAATCTTCACAAATTCAC144028569ACTTTCTGTCCAATAGCTCCTCTCCATTTTTCATGTGTACCATTTCTAT
chr2:147377650-147377668
GTGTCAGGGGACATTGGTTAACATATACAA147377650AATTTCAGTTCAATAGGAGGAATAAAATTCAAGAGATGTTAGTTAATTA
chr2:151462918-151462936
TCTACACTTGATACTTATAACCTATATATA151462918ATTTTCATTCCATTAGGTGGGTCCAGTGGTTTTCAGCTAATAATGTTTC
chr2:173252675-173252693
TGGATCGGACATTGTTTCTATCCTCAAGAA173252675ACTTACAGTTTAATAGGTGAGGCAGGCAAAAAAGCTGGTGATTTTATAT
chr2:179326668-179326686
TTTTGTAAATACCAATTTTATTTTCAATCA179326668ACTTTCAGTTCAATATGTAAGGATGACAAGACTGCACAAGTAGCAACTT
chr2:184053903-184053921
TGAGACACAGTTAAGGAGTAGAAGCAAAAG184053903ACTTTCAGACCAATTGGGGTGTGTGATAAATAAAGCTTAATTTTGAAAT
chr2:200728570-200728588
CATTAGGATGGCCATTTAAAAGACAAATGA200728570ACTTTCAGTCCAATATCTGAGATACCTCAAAGATTCAGATGTCTCCAGT
chr3:7516677-7516695
ATATTGAAGTTAGCCCCACATTTAAACACA7516677GCTTTCTGGCCAATAGGTGTGGATTCCTTACAAACTCCTCAACAAATAC
chr3:19847691-19847709
AGGCTGACAAAAATAAGCAATGGGGAAAGG19847691ACTTTCTATTCAATAGGTGCTGGGGTAACTGCCTAGCCATACGCCAAAG
chr3:21437188-21437206
AAATACATGCATAGACATTTCTACCTTAAC21437188ACTTTCAAACCAATAGATGATTTATGCACACACACATGAGCACACATAC
chr3:24510360-24510378
ATAAATCTGCTTGACGCATAGTTGCCACAA24510360ACTTTCAGTCACATAGTTGCCACAAACTTTCAGTTTGTAAAAAAATAAA
chr3:57065253-57065271
AACACAAGAGGTGAGACGTAGCCCCATGAG57065253GTTTGCAGTCCAATAGGTGAAAGAGACACTAAAAAGATAAATACATCTA
chr3:72984715-72984733
AAACCATACCGTATCAGGCATATTGACTGA72984715ACTTTCAGAACAACAGGTGAAATAGAAGATAATATTAGCTATCAGAAAG
chr3:81742335-81742353
AATTACAGATTCTCTGGACATATACCTCAA81742335ACTTTCAGTCCAACAGTTTTGGTTTAAAAATAAACACATAAAATATTAC
chr3:94563561-94563579
TTCTGTGAGAATTCAAGAAATTAGTTAAAA94563561ATTTTCAGTACAACAGGTGAGCACAAAGTTGAAAACAGCCACATTGAAA
chr3:102060250-102060268
ACTACATAGTCCTATATCCTGCTCACTGCT102060250ACTTTTAGTCCAATTGATGAATGGTATAAATATATTGCTATGATTATAG
chr3:112995049-112995067
ACAAAACCCAGCATGAGAGCAAGACTAATA112995049TTTTTCAGGCCAATAGGTGGCCGTGAAGCAGCCTCGCAGAAGAGGCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/CACCTATTGGACTGAAAGT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CACCTATTGGACTGAAAGT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
7.176 | 7.165 | search_minus_done; http://172.18.8.78:28018/match?q=ACTTTCAGTCCAATAGGTG&k=3&no_gap=1&offset=0&limit=50
7.188 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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