GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-13 13:29:06, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3815314-3815332
AGCAATTGTATACAGTAATATGTGTATAAT3815314ATATACAGACATGTACTATATTTGCCAATAACAAAACAAAGTGGGTGAA
chr1:26366019-26366037
AAGCACTGGCCTTAAGGCCAGGAATCTGCC26366019ACCTACTGCCATATACTAGCTGTAAAAGCCTGGGCAAGTAACTTTACCA
chr1:32108363-32108381
AGAGCAGTCACGGCAGCAAGAGCTGCCACC32108363AGACACTGGCATGTACTAGGCACTAGCAACACGCCAGGCTCCCTGCATT
chr1:43005116-43005134
GTTTCTTCTATTATTATAGCATAAATTGCC43005116ATATACTGCCATATACTGTGGATTATGAGTCAAGCTATATGTCAAGATA
chr1:49388386-49388404
ATGTGAACATTCATTGCTGTGTGACTTCAC49388386ATATACTGTAATGTACTTGAGAACCATTTAAAGTATAAATTCTAGGAAA
chr1:50616330-50616348
TGAGGGTTCTGGATTGTTTTAATGTACCTT50616330ATATACTTTCATGTACTGGACTTATAGGAACACTATGGGAATTTGGTTG
chr1:52013587-52013605
TAGAAGTGACATTGTCACCAACCAAAGATG52013587ATAAACTACCATGTACTAAGTAGTGTGATTAATTAAATCCTCAAAACTG
chr1:53720436-53720454
AGCTCTATTCATTAATTCAACAAATCCTTG53720436ATATCCTACCATGTGCTAGACATTGCCAGGAGCTGGGGAGAATGGTGAG
chr1:58411619-58411637
TAAATCAGTAAAACCTGGTTGGTGAGTACC58411619ACATGCTGCCATGTACTGGATTACATTCTATCATGTATATCTAATCCAC
chr1:60185625-60185643
GTTCAAGTCCCCACTATTGAGAGATCGACA60185625ATTTACTCCCATGTAGTAGAATGCCTTTATATAACTTTCTTGTTAAAGT
chr1:63326467-63326485
TCTAGTGTGGTGAATATATGCTACATAGAT63326467ATACACTGCCCTGTACTGGGGAATAATTTTACATATATGGTGGCAGGGA
chr1:64932251-64932269
ACACACACGCATATATATGTATATGTATTT64932251ATATACAGCCATCTAATAGCTATATTTATTCTATATCTATATCTGTGTA
chr1:74464231-74464249
TACAGTAACTGTCTTGCCATAAGCTTGAAT74464231ATGTACTGCCATCTACTGGTAAATACTACAAAATCAAATTAAAACAAAT
chr1:79141369-79141387
ATTTCATGTAGCAACAAAAACTAAAGAACT79141369ATATACTGCAATGTACATGAATCTTACAAATAAAACATCAACCCGAAGG
chr1:97632790-97632808
AAATTATTTTGGACATAGGAAGAGCACAAT97632790ATATACTTCCATGGAATAGCTACCTCATATTCATATACTCTCTCGATTT
chr1:97651022-97651040
AACTTATGCATCCACCTTATGACTGAGAAA97651022TTATACTTCTATGTACTAGCCAAGAGAAATGAAAACATGTTCACAAAAG
chr1:109255775-109255793
ACCGAGGTTGTATATGTTTGCGTGTTTGAA109255775ATTTAATGCCATATACTAGAGAAAGAAAACAAGATTATCATTATATTTT
chr1:158819788-158819806
AAACAAACATTGACAGTTCTGAGGGGAGAA158819788ATATACAGCAATGTAATAGTAAGAGACTTTAGTACTCACAATAATGAAG
chr1:170673038-170673056
TACATAGAAAACAAAGAAGACATCATGAAA170673038ATATACAGCCATGTCCTAAATTGTGTGAATCGAGCACTAGCTCAGAGTT
chr1:175422542-175422560
AGTTAGATGTGGAAGGGAAGCAACTGAGTC175422542ACAGACTGCCAGGTACTAGATCACAAAGATGAGCCCGGAGAGGGGAGGG
chr1:181989978-181989996
AAGTATAATATCAATGAGAAATCAGAAATA181989978ATATACTGCCATGTTTTATCTTTGATGATTGAATATTTAGCAAGCACTC
chr1:190154806-190154824
GTCTCCTGCATGTATTTCTATCTTGAATGT190154806ATATAATGCCATCTACTAGATTATAGTACTCAAATACAAATATTTGATC
chr1:204873060-204873078
CAGGGTTGTAGGGTGTTTGTTGAAATTTTG204873060CTATATTGCCATGAACTAGGTTTCAGCATGGCATAAAAGGAGTGTAGAC
chr1:208502946-208502964
CATAGGTCAGGCATTTATTCACCTACCGTC208502946TTGTACTGCCATGCACTAGGGTTGTGAGATGGAGCTTCATTATGTTAAG
chr1:211506278-211506296
GTATCATTCCCACAGACCTCCCTTAGAGAT211506278ATTTATTGCCATGTATTAGCTGTGGACAGCCAGAGGCTAAGTTCTTTCC
chr1:216561411-216561429
AGAAAAAAAGTCCTTGCCCAGGACTTGACT216561411ATATTCTGCCATGAACAAGTTACATGGCTATTTAAAGTTATAAAGCAAC
chr1:219732016-219732034
TTTATTTCTCTCTGTTGGAACATTGTCATA219732016ATATACTGTCATCTACTAAAAAATTACTGTAATAAATATAAAAATCTTC
chr1:222591448-222591466
TTTTTAAGGTGGTGTGGGCAGCAGCGAGCA222591448ATATAATGCCATGTTCTATCATCTTTGGTCTGGAGTAAAAGATGTAGCA
chr1:227504369-227504387
ACCAATAAATACCTTTCAAATGAAGGACTA227504369TTATAGTGCCATGTATTAGGCAACTGTAACCAATAATCCACTTTTGCCC
chr1:243410059-243410077
TACTTAATGGTAGAAAATCTTGTTTTCTAA243410059ATTTTCTGCCATGTATTAGGATTAGATTTGTAATATAAAAAATAAAATG
chr1:245098108-245098126
TCAATTTCGGTGTACCCCTCACAGTGTCTA245098108ATATGATGCTATGTACTAGGATTTCAATTTACATGAAACAAATTGGGAT
chr2:6958893-6958911
AGCGAACATGTGTCGTTGCAGCAAGTAAGC6958893ATGTAGTGCCATGTACTCGCCAAACACGTTGCTGCATCTTCAGTAGATT
chr2:11648139-11648157
TTATCCCAGGAGGGAATTATATGCCAAAAA11648139ACATAAAGCCATGTACTAGATATATTGTTTTCAGAGACTTCTAGACAGC
chr2:13467261-13467279
CCTTCCTTCCTGGGGGATTTGCAAGGTATA13467261ATATGCTGTCATTTACTAGGGGAGTGGGATATTCTAGCATACCCTAAAC
chr2:17602194-17602212
GGTTCACACCACCATAACTATGTCATCAAC17602194ATCTACAGCCATGTACTATGCTTTCTTTCTTATTCCTGCAGATAACTAC
chr2:22712221-22712239
TAAATTATACCTCTAAGGTTACTTTAAAAA22712221AAATACTGCCAGGTAATAGAGTTTATATCTCACTGCAAACAAGAAGAGT
chr2:23934665-23934683
TCAAGTAACAAAGACAATTACAAATAAAAA23934665ATATGCTGCCATGTATTCGTGCTAAAACTCTGGAATGGGTTATTAAGAT
chr2:26299364-26299382
TCTCAATGATCTCCTCCTGATAAGGACATA26299364AGATACTGCCATGTTCTGGAGAACACCTTATTTTGGAAGGTGCCCCCAA
chr2:27565408-27565426
GAGGGCAAGAGAAAGAATGGAACAGAATAT27565408ATATACTGACATATACTGGACAGTAAAACAATAAAGAGCTGGGTAAAGT
chr2:42302620-42302638
CCTTGGGCAATCACAGCCTAACCCCTGCCC42302620AGATACTGGCATTTACTAGTTTCAGTGTTTCAAGTAAGTCTTGTTTCTT
chr2:46596495-46596513
ACCTGGGGCCACATAATTTTCATGTTTCAT46596495TTATACTGCCTTCTACTAGAATGAGCTTGATGTAGCAACTGGAGGCCCC
chr2:56843446-56843464
TCAGTATTTTATCCCTTTCAACATTTACTG56843446AAATACTGCTATGTGCTAGACACCGTGGGTGTGACTAGGCATACAGAAA
chr2:59073225-59073243
CTGACTTCTAAGTCAGATAAACTAGAATGA59073225AAGTACTGCCATTTACTAGTTGTGGCATCTGAGGCACCTGGGGATGATA
chr2:91769189-91769207
CTTAATCACCACTTGTGTCTGGTTCAGATC91769189ATACCCTGCCATTTACTAGCTGCAAGACCTTCAGTAGTACAGGTTTAGT
chr2:102575186-102575204
TTTGTTGGTAGCACCTAACTCAGCTTTTAC102575186ATATACTGCCATGTGCTGCTCCCTGTTGGTTTTTGCCCATGTCTTTTGT
chr2:103279821-103279839
ATAATCCACTATTTTTCAAAGCCAACAGAT103279821ATTTATTGCCATCTACTAGGCAACTTGGAAGATGTAAATTGTAATAAGG
chr2:126194901-126194919
TGTTACCTATTTCTTGAAACAAGTTGTTGT126194901AGATACTGCCATGTACAAGGAATTTCAATCCACTTATTTCTATCTGGTT
chr2:128628316-128628334
ATTCTTATACCCTTTCTCTCAATGAAGGAG128628316ATACATTGCCATGTACTAACCCGAACCCAAATGCAACGAGAGATGCAGA
chr2:133252748-133252766
GTACCAAAGAGGAAGAGAGCATCATAGCAT133252748ATATGCTGGCATGTTCTAGAAGGCTCCATGGAGGATTTTGGGCAACTTC
chr2:133950072-133950090
ATACACTGGGAGAAAACATTTACATACCAC133950072ATATACTACCAAGGACTAGTTTCCAGAATATATAATGGACTCTCAAAGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/CTAGTACATGGCAGTATAT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CTAGTACATGGCAGTATAT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
4.632 | 4.621 | search_minus_done; http://172.18.8.78:28018/match?q=ATATACTGCCATGTACTAG&k=3&no_gap=1&offset=0&limit=50
4.645 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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