GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-18 20:01:28, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:8074113-8074131
TTTGAAATCAGAAAGTGTAGAGTCTTCTAA8074113AAGGAAGTCTGTATCTGAGCTAGTTAGGAATTCCACCTCACAGTCTGTG
chr1:29259899-29259917
TCAGACTGGGAGAGGTAACTTATCTAAGGT29259899CATGAAGCTAGTAACTGAGGGTGCTAAGACTCAATGTTTAGCTGACTTC
chr1:35822916-35822934
TAATCCAGAGAAGGGTTGAAGAACCAGCCA35822916CATGAAGGATGTAACTGGGCTTCAGGAACAAATAAGAGCAAGGATGCCA
chr1:36834526-36834544
TACATACTCAAGTGTTTTGGGGTGAAGGGT36834526CATGAAGTCTGTAACTTACTCTCAGGTCCCCCGAGGCAGAGGAGAAAAT
chr1:38316673-38316691
AGGAAAAGGAGTAAGGAAGAGCTAAAGGAT38316673CATGAAGTCTGTTATCGAGTAGTCATAAACATCAGCCTCTTCAGGCCAA
chr1:38688849-38688867
TAACGGTGAGAAGTGAGTTGAAATCCTAGC38688849TCTGAAGTCTGTTACTGAGTGCCTTAGGCAAGTTTCTCTACTCCCTTTG
chr1:41511791-41511809
GAGACGTTCTGTGACTTCTTGGTGGCTCCA41511791CATGCAGTCTGAAACTCAGAAGGGGAATTGCGAACCACCTTTTATCTAG
chr1:43072489-43072507
AAAAAGCTGAATTGCTTCATAGGTACCATA43072489GATGAAGTCTGCAACTGTGGTTTCTCAACATTTCAAGATAAATGAATCC
chr1:44008298-44008316
TGATGGCTCTCCTGGGAGCTCTGCCCCCAC44008298CATGAAGTCTGTAACAGCACGTTACACCTCTGCTAATGTATGGGGAGTT
chr1:56578751-56578769
ATAAGTTCAATTTTTGTAACTTTAAGGTTT56578751TATGAAGTCATTAACTGAGATGAATAAAGATGTTTTACTAAACACATGA
chr1:57844713-57844731
TCTCTGTTAGTTCTTGGGGACTAGAACTAA57844713CTTGAAGTCTTTAACTGTGCTGTGGGTAAACCTAGGGTGGTTCTTTACA
chr1:60747033-60747051
TGATAAATAATGATTCTCAATCATTTGGGA60747033CATGAAATCAGTAAATGAGGGCAGACCTGTAAAACCAGGACAAGAGAGT
chr1:61914252-61914270
CAAAAACTGATACAGTTGTTACCTCCATTT61914252CATGGAGTCTAAAACTGAGACCTAGTGATGCTAACTTGCCTAAGATTAT
chr1:66595018-66595036
GTCAAAATTAGAAGTCATAGCTCTGCCCCT66595018TACGAAGTCTGTAACTTAGCATATCATTTAAACCTCTCTGTGGCCGGGC
chr1:66770889-66770907
CTGTTTTAGATAAAGAGGCCAGGAAAAGCT66770889TAAGAAGTCTGTAATTGAGCTTAAAATCAAAATGCAAAAACCCAGAGGA
chr1:67863467-67863485
AGCCTGGGGTCCACCCCGTACCCCTTCCCA67863467CATGAACGCTGGAACTGAGATGGCTTCCCCATCATCGTCTGGATTTTCA
chr1:69893925-69893943
CCTTCCTCTGTCCTCTTCCTGAAATGTGAA69893925CATGATGCTTGTAACTGAGGATAGTGGGGAGACCAAGGGGATTTCAGAA
chr1:76708059-76708077
AAGATCTTAGCGGTCACTGCATGCTGAGTG76708059CATCACGTCTGTAACAGAGCTGGGAGCAAGTGTTAGGGTGATGTTGCCA
chr1:87687812-87687830
ATCATTAAGGGTGAAAGGGCCATCTACTTG87687812CATGAAGCCTGTAAATGTGAAAGACTAGGTCCTAGCAAGGCCAGCATTG
chr1:88487285-88487303
AATTGGACAAAAGAAAGGAGCTATAGACCC88487285CATGAAGTCTGAAACCCAGCAGGGCAGCTATTAAATTTTAAGGTCCAAA
chr1:97126762-97126780
ATCATTTGTGTGATAGGAATATGTATAATT97126762CATGATTTGTGTAACTGAGATATGTGTAACATTGATAGAAAATGCTTGC
chr1:99738256-99738274
CACCTGTAATTTCACAATTAACTCCCTTGA99738256CATGAGGTCTCTAACAGAGAGTACAGGGAAGTATAAACATGGGAAGCAG
chr1:106483207-106483225
TTTTGCTGCATTTGTTTTTGGGTTCTTGGT106483207CATGAAGTCTGTGTCTAAGCTAATATCATAAAGGTTTTTCCAGAATTTA
chr1:111960163-111960181
ATGTAAAATAAGAGGAAGGAGGAATCCAAT111960163CATTAAGTCTGAAACTGTGAAGTTTCTGAGACTTTTATGCTACTTACAA
chr1:119873202-119873220
ACACAAACCTACCCCAAAGTTTGACCTTTG119873202CCTTAAGTCAGTAACTGAGGAGGGCCACGGTCCTGAGTTCAGTCCAGAC
chr1:144374457-144374475
ATAATAGTTTCATAGGAGAAGGTTAATTGG144374457CATGGAGTCTGTAAAAGAGAAGTTTGGATAGATGATCGAGCTATATATT
chr1:146124281-146124299
TGATATTTGCAGGAAAACTGGTAAAGATCA146124281GATGAAGTCTGTAGCTTAGTTAATAATATTGTACCAATGTCAATTTCCT
chr1:147666113-147666131
TGATATTTGCAGGAAAACTGGTAAAGATCA147666113GATGAAGTCTGTAGCTTAGTTAATAATATTGTACCAATGTCAATTTCCT
chr1:147965599-147965617
ATAATAGTTTCATAGGAGAAGGTTAATTGG147965599CATGGAGTCTGTAAAAGAGAAGTTTGGATAGATGATCGAGCTATATATT
chr1:148212244-148212262
ATAATAGTTTCATAGGAGAAGGTTAATTGG148212244CATGGAGTCTGTAAAAGAGAAGTTTGGATAGATGATTGAGCTATGTATT
chr1:165744238-165744256
AAGAGGGGGAATGAGACCCTAAGATTTAGA165744238GATGAAGTCTGAAACTTAGGACTTTATATTTATCTGAACATCATATGTA
chr1:171970597-171970615
GATTGATTACTTGATCATGAGTTCATTACC171970597CATGAAGACTATAACTGTGCCTTTTATCTTCTGAGCACAGCAGTATTTT
chr1:178263207-178263225
AAAGAATTGCAAGCAATTTGGTATTTCTAG178263207AATGAAGTCTAAAACTGAGCACACAGACAGAGACAGTGGCTGGATTGTG
chr1:184702459-184702477
ACTTTAAATTTAAAAATTTAGTTGTATCAC184702459CATGAAGTCTTTAACTTAGAATATTATTTAAAACATAAAAACCTCTCGC
chr1:185154362-185154380
ACTCCTTTTTTAAAAATACCATTGCTGAGT185154362GATGAAGTCTGTAAGTGATCTAGGTTTCTAGTCTGTTAATATCACCATA
chr1:193325144-193325162
ATCTTTTCATCTTCCCTCTCTCACCATTAG193325144CATGTAATCTGTAACTGAATTTGAACAATCCAACTTCCAAATGATTTCC
chr1:195812503-195812521
TTTTGTTGCATTTGCTTTTGTTTTTTTGGT195812503CATGAAGTCTTTACCTAAGCCAACGTCTAGAAGTGTTTTTCTAATGTTA
chr1:216835830-216835848
GAAAGCCCAGAAAACAATGGAAGCTCCTGG216835830CATGTAGTCTGTACCTGAAGTTTAAAATAAAATCTGTATACCTGAACTG
chr1:222852681-222852699
ATATGAGAATAAGTAACTACATTTATAAAA222852681CTTGAAGACTGTAACTGAAGTAAGAAAAGAAATCATACATGAGCCATGA
chr1:225755620-225755638
TGAGAAAATTACTTTTATCCTCAGGCTTGC225755620CCTAAAGTCTGTAACTAAGTCTGATAATCAACCATCTGCCCCTTGAGAC
chr1:234493292-234493310
TTCATATAACCTCAAAAAACACAAGCAAAA234493292AATGAAGTCTCTAATTGAGCTTGTGAATTCTACAACTCTTCCTACTAAC
chr1:237725427-237725445
TAGGAGAATGCTTACATATTCCAGATAAAA237725427CATGAACTCTGTATTTGAGTTGTAGTATCTTTGGAGTACTGTTGTCAAT
chr1:244282646-244282664
CTTTCTTTCTCAGGTTCTGTCATGGCTCCA244282646CATGGAGCCTGTAAGTGAGGAGGGAGAGGAGATGGAGGAAAGGAGGCTA
chr1:246940729-246940747
CAGGTTTGGTATAGATAGTGTTTGGAAGGT246940729CATAAATTCTGTACCTGAGAAAAACATAAAACATAATTTAAAACCAGAA
chr1_gl000192_random:415452-415470
TGATATTTGCAGGAAAACTGGTAAAGATCA415452GATGAAGTCTGTAGCTTAGTTAATAATATTGTACCGATGTCAATTTCCT
chr2:21241804-21241822
TTAAATAGGTTAAATTACATGTCTTCTCCT21241804CATGAATTCTGAACCTGAGACTGCGAGCAGAGATGAGGCAGCTGTGTTT
chr2:21392940-21392958
TTTAGTTGTATTTGCTTTTGGATTCTTGAT21392940CATGAAGTCTTTACCTAAGCCAGTGTCAAGAAGGGATTTTCTGAGGTTA
chr2:49974287-49974305
AAGTTCAACTTTTAAGCCAAAGATTGCGTT49974287TATGAATTCTGTAACTTAGCACTGTATTTTGCTTTAAAGCCTGAATATT
chr2:50858177-50858195
CCTTAAGAAATTTACTATTATCTTATTTGC50858177CACGAACTGTGTAACTGAGAAATTAAAACAATAAATTGATTATTACAAG
chr2:70687234-70687252
AATTCTGACACTGCCAGAGTTGAGAGCCAC70687234CATGAAGTTTTTAACAGAGAAACCAACGTTTCTCAACTGTGGCTGCCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/CTCAGTTACAGACTTCATG
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : CTCAGTTACAGACTTCATG | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.589 | 6.578 | search_minus_done; http://172.18.8.78:28018/match?q=CATGAAGTCTGTAACTGAG&k=3&no_gap=1&offset=0&limit=50
6.601 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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