GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-19 06:23:48, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:12054308-12054326
TTGACATGGAAGCAGTTTTAACACTGGCCC12054308TTGTGAAGCCACAATGTACCTAAAGTACTAGGCCAAACATTTATAACTT
chr1:19284258-19284276
CCCCATTTTACAGAGAAGGTCACTGAGACG19284258TTAAGTAGCCACAATGGTCCAAAGTGCATGCTCTAACCGGCCTTCCACA
chr1:23355878-23355896
TTCCATAATAATTAGCTGTAGTTTCTTTTA23355878TTAGGAAGTCACAATGATGATTTGAGAATGTTCCAATTTTGAAGACTAT
chr1:31509965-31509983
GACAATACTCAGTGTGAGATTTCTCACTCT31509965TTATGAAGCCACAATATCCTACAAGGAAAAACCAGGCATCAACTATTCA
chr1:35732007-35732025
AATAATAATAATAATGATACTCATATGGTA35732007TTAGGAACCAACAGTGTTCTAGGAGATTTAGAGATGTTAACTAATTTAA
chr1:38020726-38020744
CCCAAAATACGGCTCACTGACAAGCTGAAC38020726TGAAGAAGCCTCAATGTTCCTTTCCAGTGCCCATCATCTCTCCCAAAGC
chr1:39129471-39129489
CAGGGATAAAGTGAAAAGAAGAGAATGAAG39129471TAAGGGAGCCAGAATGTTCTGTTTTGACTGGTACATGGAGATCCAGCAC
chr1:40956903-40956921
ATGTTATTCTAGTTCATTCAATCCATTGAG40956903TTAATAAACCACAATGTTCTTATTCATTTTCCTGTTGATAGACATTTAC
chr1:50628162-50628180
TTATGCCACATGATGAGTACAAACATCTAC50628162TTAGGAAGCCAGAATATACCCTCTGGAAATAACCAAGGACTGGCCCAAG
chr1:59045747-59045765
ATACCCTCTTCTTGCTTTTCCAGGTATTAA59045747CTAGGTAGCCACAATGTTCTATAACTAGCAGAGTTCTCTATTTTCCATT
chr1:59050386-59050404
AGAGATTGGGAAACCTTCTCCCTACATTCC59050386TGAGGCAGCCACAATGCTCGAACCCCACACTGATGAGTCACGGTGCTTC
chr1:64780967-64780985
AGAGAGAGAATTCTCCTTGGGCTTTTCCAG64780967TTATGAAGCCAGAATGTTTTTCTGTTCTTGGGTAAAAGTGAGGTATATA
chr1:69547632-69547650
GTGAACTCCAACATGCTTGATTCTAGAACT69547632TTAGAATGCCACAATATTCACTTACTGGGTGAGGCCAATAACAGAGAGA
chr1:83180844-83180862
TCTTATTTATCTAAACCGATAACTGCAGCC83180844TTAGGCAGCTACAATGTTAAACAATTTTTGCTTAATATTTTCCACAAAG
chr1:89806764-89806782
CAATATGTATACCCTGCTAGCTCAAATACC89806764TGAGGAAGCTAAAATGTTCACAGTCCTGACCTAAAGGATGCCTTCTTCT
chr1:91502583-91502601
AGAGTACTAATCTGAAGAGAGACCTCCTGG91502583TTAGGAAGCCAGAATCTGCTCAGGCAGGCAGGCTTAGGTGAGTGAATGA
chr1:99351349-99351367
ACCAAGAGAAATAAATCTAATAATTAACAG99351349TTAGGAGGCTACAAAGTTCTTTGCTGTGTATTAATATGAAGTAGGGACA
chr1:108489896-108489914
GACAGATTCAAATGTGCCAATTATATCATT108489896TTTGAAAGCCACAATATTCCAAGTCTTATATTCAATGAATCTAAATAAA
chr1:109957212-109957230
GCTACCTTCAAAAGACCAAGTGACTTGAGT109957212TAAAGAAGACACAATGTTCCAATCTTAAAAGATAAAATTTCAGTTTCTA
chr1:114877970-114877988
CACAATAGGACTCCCCTCCTCCTCTCTCAT114877970TGAGGAAGCCACAAAGCTCCATTTCTTCCTTTCCAGGTCTAGTATCCCC
chr1:120493166-120493184
GTAGGCAAATGACTGTCCACCACTTGCATC120493166TTAGGAGGCCACAATGTTTCCTCAAAGCTCAAGATCCAGTCAGTAAAGG
chr1:146012983-146013001
GGGATATTGGCAAGATAATTGGTGTCCTCT146012983TTTGGAAACCTCAATGTTCCCTCTGCCATTCCTGATTTTTGTGTGTCAG
chr1:147554760-147554778
GGGATATTGGCAAGATAATTGGTGTCCTCT147554760TTTGGAAACCTCAATGTTCCCTCTGCCATTCCTGATTTTTGTGTGTCAG
chr1:156154913-156154931
TTTAGCATTCAGTCTGGGGCCTGTGTTGTC156154913TGAGGAAGCCACATTGTCCAGGGCTGAGTCCTGCAGGATTATTTTCTTT
chr1:157078506-157078524
GCTAAGGAAATATTACAAACAAGAGAAGGG157078506GTAGGAATCCAGAATGTTCTGGGAGGGGATGGAGGACGTGGGTAACTGA
chr1:159831555-159831573
TGCCCCTTGGTGGAACTTGCCCCAACCTGG159831555GCAGGAAGCCACAATGTCCAAACTTGAGCCCTGCCCTGTGGACCTGTCC
chr1:162903634-162903652
ACTATTCTAGAGGCAAAATTATTGTGGGCA162903634TTAGGCAACCACAATTTTCTACAAAATGGCTCAACATAGTAGCTTTTAT
chr1:168681311-168681329
TTATTAATGTGGATATTTGTTCAACAGTTG168681311TTAAGAAGACACTATGTTCCAAGCACTATACTGGGCATTGAAAATACAA
chr1:198631165-198631183
AACAAAGACTTGTCTTCCAAACGATGGTGA198631165TTAAGAAGCCACCATGTCCAACTGGTCAGCCAGTTTTTATATTGTACAA
chr1:214477444-214477462
TCACACAATACACACGCGAGCACCTAACAG214477444TTGGGAAGCAACAATGTCCCTGTCCTTTATGGGAAGCAGGAAAAATAAT
chr1:216553678-216553696
ATGAGTATTGCTATCACTACTGCCTATTTA216553678TTTGGAAGCAACACTGTTCCAGGCACCAGAATACAGAGCCAGAATCACA
chr1:222211847-222211865
GTACAATCTAATCCCCATGAGACACACAAA222211847TTAGGAAGCAACTATGATCAGTCATTTGTGCCAGAATGTGAGTACATTT
chr1:224399508-224399526
TAAATTCATTTGCTCAGTGAGTCAAGGTTG224399508GCAGGAAGCCAAAATGTTCAGCCCTTGCTTCTGATGCTGAGGCTTCAGC
chr1:227314559-227314577
ACAGAGGAAAATGAATGCTTTTCCCCAAGA227314559TTAAGAAGCTAGAATGTTCTTCTCATCATTCTTCTTTTAACACAGTGCT
chr1:238305617-238305635
GGTCTATTTTAAAGTAACCAACCTAAAATT238305617TTAACAAGCCACAGTGTTCTAAGGGAAATTGTTAATATGAAAACTGAAG
chr2:21251240-21251258
CAATTCTTCTGAGTTCAAGATATTGGCAAT21251240ATGGGAAGCCACAAAGTTCTTCACTTGCTCATTCTGTTCCCATGGTAGA
chr2:22809082-22809100
ATCTCTGGCCCAAATTGTCTAGGGTATCAG22809082ATAGGAAGCCACAATGGTGGATATGACTTACACCTGTGACTAAAATCAC
chr2:35766609-35766627
CATATCAGAGTGAAGGAAACATGAGGCAGG35766609ATAGGAAGGCACAATGTTGCAGGTGTGGCTGAACACAGATGGGGGCCAA
chr2:50943479-50943497
AACCAATTTCTGTTCACAGGGGAGAAACAT50943479TTAGGAAGCCGCAATCTACAGTAACTTTGGGAGGAATCTGTCCATTATT
chr2:57467937-57467955
CCCAAACAAATGGAAAATCCATGATCATGG57467937TTAGGAAGACTCAATGTTGTGAAAATGGCCATAATGTCCAAAGTAATTT
chr2:67369256-67369274
ATTTAAGATCATGTATACACAGAGAGAGAC67369256TTAGGCAGCCACCATTTTCTTAAGCCAACCTCTTTTAACTTGAGTTGGA
chr2:77253909-77253927
TAAAAATTGTCTAAAATAAAGCTGCATATT77253909TGGGGAAGCCACAATGTTAGACTGTAGAAATACACATGTATTCAAAAGA
chr2:101101694-101101712
TAAGTTAAGGCACAGCAACCCCAGATTCTC101101694TTAAGAAGCCACAAGGCTCATGTAATTGCCTGATGGGTTCTTCTTGCCC
chr2:105438898-105438916
CATTTTATAACCAAGAAACACTCATAGCAT105438898TTAGTAAGCTACAATGTTGCAACTTCTATTCAAGTTGAAGTTGACAGTT
chr2:127314713-127314731
TTAGACATGGAAGCAGTTTTACACTGGCCC127314713TTGTGAAGCCACAATGTACCAAAAGTACTATGCCAAACATTTATAACTT
chr2:130002454-130002472
GCACTGCCCGTATTTCTGATCCTGACTCCT130002454TTAGGAAGCCTAAATGTGCTTGATCTGAAGTGCTATTCCCCTCATTGAC
chr2:137947038-137947056
GCTCTTTCTCAGGGCCTCTAGTGTCACCAC137947038TTAGGAAGCCACAAGGTCAACGTCACCCATGGCCTATGCCCTCTAGAGC
chr2:146944357-146944375
AGAAAGGAAGGAAGGGAAAAGGGAGAGAGG146944357GTAGGAAGAAACAATGTTCAAATTCCTCAAATAAAAGCCCTTATTTCAT
chr2:161266205-161266223
TGTACAACCTCAGTTGTCAAGAGTGGTCTC161266205TTAGGAAACCACAATGTAAACCACAAAAGAAGAGAATAGATTAATTTTT
chr2:168123131-168123149
TAACAATTTTCAATGCTGTCCAGCCTGTTT168123131TTAGCAAGCCAACATGTTCAATCTTCATGCTATCAAAATCACCAATTCT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/GAACATTGTGGCTTCCTAA
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GAACATTGTGGCTTCCTAA | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.298 | 6.287 | search_minus_done; http://172.18.8.78:28018/match?q=TTAGGAAGCCACAATGTTC&k=3&no_gap=1&offset=0&limit=50
6.310 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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