GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-18 07:50:48, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:5286634-5286652
GAGCCTCCAAGCCTTTGCAAACAATGGCTC5286634ATTAGGTTTTATCCTTTATCTACCTGTCTGCGGATTAAATGGAACAGGC
chr1:11121784-11121802
TCAATCAGTGTGTCCAGTGCTACAGGCTTG11121784ATTGGGTTCAATCCTGTACTTGGGTCAAGGTGTTTGCCTACATTGCCTG
chr1:25294935-25294953
ATGAGCATGTGGCATCATCTAGATTTTACT25294935ATTTCTTTCCATCCTTTACAATGTCCCACCCATACCAAATTCAATTTAT
chr1:28905312-28905330
CGCATTTCTCATCCATGGATGTCCACTCAA28905312ATTAGGTTTCATCCTGGACCAGTCATTCTAAATACAGTGTGTGCTACAT
chr1:38980539-38980557
GCCTGTGGCTTCTGGAGCCAGGTGCTTTTG38980539AGCAGGTTTCATCCTTTACTCTACCCATGTAATCCTAGACATGCCCATC
chr1:39758629-39758647
CTGGTTTGGCCCTGTTTTGGTTTTCTGCTT39758629ATTAGGTTATATCATTTACTATGCACTTATTCATATCTATTATAACATT
chr1:45594323-45594341
ATTTATTTGTTTTAAAGTACATTTGTTAAT45594323ATTAGGGTCCATCCTTTATGTTGTATAGGTCTATGAGTTTGATAAATGC
chr1:47232455-47232473
CTTTATACCTTAGTGGCTGGTGAGATGGGG47232455ATTAGGTTCCTTTCTTTAACAAACTCACAGGGTTTTGTGAGAATCCATG
chr1:54422676-54422694
TGTACCCAGCTGAGCTCGGTCTCCAGGCAC54422676CTTAGGTTCCACCCTTTAAGGGGGTATCAGTGCCTCAGACCATCTGTAC
chr1:58471080-58471098
GGCAGAGATGATCATTGTCATTCAGAACAC58471080ATGAGGCTCCTTCCTTTACAGCACTGAGAGCCTCACAAGTGTGTGGCCA
chr1:70867825-70867843
GTGAACTTGCTCTTCTATAAATTCTTATAA70867825ATTAGTTACCATCCTTTATAGCACATTCATTTGCTAAGTTTCATTTCCC
chr1:71031697-71031715
TTTATATATTCAGGATAGTTAGGTCTTCTT71031697ATTAGATTGAATCCTTTACCATTATATAATGCCCTTCTTTGTCTTTTTC
chr1:78361202-78361220
ATTTTGTTGCTTGTTCCAAAGACTGTAAGA78361202ATTAGGTTTCAACATTTACTTGTAGCATATAGTTAAGTATTACGTTTAA
chr1:81986972-81986990
TATACTATATAGTGATGTGGAAAATGTTAT81986972ATTATTTTCCATCCTTTAAAACTATTCACAATTAAAATATAAAAAGAAA
chr1:83790370-83790388
TTGTCAGTTACTGGACCTCTGCACTTGTTT83790370ATTAGGTTCCATCCTTTCCTTTATGTTTTTGATTCTACTTTTATTTCTT
chr1:99656901-99656919
ATATCTAGGCTCAATAGGATTTTTAAAAAT99656901ATTTGTTTCCATCCTTTTCCTCCAACACCTCATCTTAACAAATGAGAAG
chr1:121363120-121363138
TTTCTGAGAATGCTTCTGTCTTGTTTTTAG121363120ATGAGGTTACATCCTTTACTACGATAGGCCTCAAAGAGGTTCAAATCTC
chr1:121365257-121365275
TTTCTGAGAATGCTTCTGTCTTGTTTTTAG121365257ATGAGGTTATATCCTTTACTACGATAGGCCTCAAAGAGGTCCAAATCTC
chr1:121367123-121367141
TCTCTGAGAATGCTTCTGTTTTGTTTTTAG121367123ATGAGGTTACATCCTTTACTACGATAGGCCTCAAAGAGGTCCAAATCTC
chr1:160963527-160963545
GTTTTTCATCCCGGTCACTGGCAAAATTGC160963527ATTAAGTTTTATCCTTTACTCCAGAAGGTGGCACTCATAGGCCCTCCAT
chr1:170202165-170202183
ATGATTAGAAGTGAATTTCTTTAGCTCCAA170202165ATTAGTTTCCAGCCTTTATTTATTCCATTATGATTTATGTGGCCACGCA
chr1:190858680-190858698
ATCCAAGCCATCTGTAAAATTTAAAGTAGA190858680ATTTGGTTCCATCCTTTGACTAAAATCTTGAGTGCATTAAAATTCATAA
chr1:192153758-192153776
GCTTCTAACATATCGCATGTTTATGTTAAG192153758ATTTGGTCCCATCCTTTAAACTGAAATATGTCATGTGAAATTATTTTAA
chr1:192856320-192856338
GCCTAGGAAATCCAGCTAGTCCTGTCTCTC192856320ATTAGGTTCAATAATTTACTGGAACAACTCAGAACTCAGGAAAGTGTAA
chr1:219208898-219208916
GAAATATGAAGCTGAGACTTTTGGCTAACC219208898ATTAGGTTCCATTCTTCATTTATATTGGTGACCTTCTCTTACTCTTTAA
chr1:226999970-226999988
TTATTGACTATATTTTCCCTTTCCTAAAGT226999970ATCAGTTTCCATCCTTTGCCCACACATCTGTGGGGAGTTCACTGGGTTT
chr1:231171017-231171035
ACTAGTTTCACAAATTCAACTTTTTTTTTC231171017CTTAGGTTCAATTCTTTACACAACATTGCAATTTGGGAATTCAAAAGTT
chr1:232937496-232937514
AGCTCCTTTCCATTTTCTGAAGCTGAGTAG232937496ATTAGGTTGCATCCATGACATGCACTTGGGTTTTCCAGCCCCCATGACA
chr1:235576093-235576111
ATGTTTATGTTAACAAAATTTATCACAAAT235576093ATTAGTTTTCATCCTTTTCAATTATTATTATTATTATTTTTTTGAGATG
chr1:237323301-237323319
TTGTTTTTCCCTCCAATTTGAATATCTGAG237323301ATTAGGGACCATGCTTTACTAATGAAATGATCAATAGGAAATAGGAAAT
chr2:5661999-5662017
CTCCTGAAGACCCCAGCTTCACACCATTGC5661999ATTAGTTTCCATCTTTTTCCCAAAATAAACAATTGGGGAGCCGAGCTTC
chr2:8165240-8165258
GGTTTCATGACTGGCTGCATGGCTGTGCCT8165240ATAAGGTTCGATCCATTACCTAGATGCATGTGTGCAGGTCTGCAGAGGT
chr2:18685220-18685238
TTGAGCAACACTGGTTGTGTTGACACAGAC18685220ATTAGGTTACATCCCTCACTGCTGTTTCCACTTGTCCTGATTTTTCCTA
chr2:48956324-48956342
TTCAGACAAATTGAGGAGGTTGTCAAAGGC48956324ATTAGCTTCTATCCTTTCCAGGGAATCAATCTGAGAGATTTCACTAGGG
chr2:49936057-49936075
GCCATGCCTAAAGCCTACCCTTTGATTAGC49936057ATTAGGTGCCATCCTTCATCTACATAGGGCCCCAGCAGTACTCTTGTTT
chr2:51511057-51511075
GGTTGAATTTATTTTTTCACAGCTATAAGG51511057ATTAAGTTGTATCCTTTACTAAGCATGGAAATGTGATTAATTTTAGTCA
chr2:55796602-55796620
GTGCTTCAGGGGTCACGCTCCTAGTCCACC55796602TTTATGTTCCATCCTGTACACCTGGCTCTGCCTTCTAGAAAGCAGTAGC
chr2:56755579-56755597
AATTTGATACATCACTTTGGAATAAGAGAA56755579ATTAGGTTACAGCCTTGACTTGCTGCTGATTTGTTTGAATTTAGGGAAG
chr2:63252228-63252246
TGGTTTTAGATAATGGAATTTCATTAAAAG63252228ATTAGTTTCCATCATTTATAGATGATAAAAATGTTTTCTTTAAAATCAT
chr2:73390831-73390849
GTGAGGACTTGGGTTTTGGACCTGGGTAAG73390831ATTAGCTTCCATTCTTGACTGGGCTACACTAGTGGAGAAGGAGGTCTGG
chr2:74573139-74573157
CTTTTTACTTTTTTTTTTTCAAGTTCTCTC74573139ATGAGGTTGCATACTTTACTTTTTTTCATTTAAAAAATGTAGTTCCAGT
chr2:81260452-81260470
TTCTACTGCAGCTAAGCTGGCACTAAAACC81260452ATAAGATTCCATCCTTTCCACTCTTTGTTCCCCCTTTCTAGAGCAGAAG
chr2:96146370-96146388
GCCCACAACTTCATCCTCCTCATTCCTTCT96146370TTTATTTTCCATCCTTTACAAACAGGATGATGAGTTAAGCAAGACCTTC
chr2:97695263-97695281
ACCCACAACTTCATCCTCCTCATTCCTTCT97695263TTTATTTTCCATCCTTTACAAACAGGATGATGAGTTAAGCAAGACCTTC
chr2:103366307-103366325
AATTATAATTTTTATGTAAAAAATACAAAT103366307ATTTGCTTCCATCCTGTACAAAAAAAATTAGATGTATGTTTATATGAAT
chr2:115417894-115417912
AAAAAAAATTACACTTTTTTTTCTAAAAAT115417894ATTATGTTCTATCCTTGACACCTGCTCAGAGCTTCTGCAGAGAGAGATT
chr2:130405773-130405791
TTAAAACAGGCTACAATGAAGACAGAGTAT130405773ATAAGGCTCCTTCCTTTACCCGATGCCTATAAATTTAAGATTTCTACCT
chr2:147667418-147667436
GAAAAAATATACTTATGATATATTTGATAT147667418ATTAGATTCCCTCCTTTAATCACTTTCAGATGTCATGTGCTTTCTATAT
chr2:162578296-162578314
CTCGGATGATATCCTGAAGTATGTTTTCCA162578296ATTTGGTTCCATTCTTTCCATCTCTTTCAGGTACCCCAATCCGTCATAG
chr2:164209366-164209384
TAGCTAGTTCTATGTTGCTAAATCGACTGA164209366ATTATGTTCCATCCTTGATTTACTGTGGTGGTTGCTAACACTTGATACT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/GTAAAGGATGGAACCTAAT
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GTAAAGGATGGAACCTAAT | format : html | download : | debug : 

0.011 | 0.011 | search_start;
4.717 | 4.706 | search_minus_done; http://172.18.8.78:28018/match?q=ATTAGGTTCCATCCTTTAC&k=3&no_gap=1&offset=0&limit=50
4.728 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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