GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2024-05-19 05:58:42, GGGenome : Human genome, GRCh37/hg19 (Feb, 2009)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

chr1:3224006-3224024
GTCATCTTCCGGTTTCAGATAAATCTGGGT3224006GTCCTCTTAGATGTTTCAGTTTCAATAATAATGAGGGAGAAAATTCAAA
chr1:7070555-7070573
GAACACAGTCTGCGTCCTTCCTTATTTTTT7070555GTTATCTTGGCTGTTTGACAAATAGACTTTGGAGGTGGAAAGACCTGAG
chr1:8918121-8918139
AGTTTTTTTTCAGCCCAGGCTAACCCCAGA8918121CCTATCTTAAATGTTTCACTGAGGATGGCTTTCTCGAAACTTATTCATG
chr1:10413380-10413398
CTGCCATAAATAATAGATTTTACTTTGTTT10413380TTTATTTTAAATGTTTCACTTAAAATTATCTTTTATAATCAGGTGATAA
chr1:31780770-31780788
AGTAACAGATGATAGATTAAGATGTTTGAA31780770GTTAATTTAGATGTTTCAGCTGCTGGTGCCCCTATGGATTCTGTACCTC
chr1:36440099-36440117
CTCTATCCCCTGTTTTTTCTGAAAATGAAA36440099GTTAGCTTAGAAGTTTCATTCCATTCTGGTTCAAAATGCTTAAGTGCTT
chr1:49674789-49674807
ATTTAATCCAGCACTAACACATATATTCCA49674789GTAATTTTAAATGTTTCACCAATTTAATATTTTAAAACTCATATAATTA
chr1:49820873-49820891
AAGCACTCGATCCAACTACTTAATTGAAAT49820873TTCATCTTAGATGTTTAACAGGTATGTCAAATTCATCACATACAAAATT
chr1:57108882-57108900
TTGTGTTTAAATGAACTTCTTAATCAACAA57108882AGTATCATAGATGTTTCACATAGTAACAAAACTATAAGGTAGTCCACAG
chr1:63250205-63250223
CTGTGGGCAGCTGTTCCTCCTTTCCTTGTG63250205GTTTTCTTAGATGTTGCAGGCAAGACTCTTTCCCCTGATCTATCGCATC
chr1:71130768-71130786
TTATAAACTTGTAACAATGGCTGTAAATAC71130768ATTATCTTACATGTTTCTCATAGGCTGTAGTAGTTGCTTATGGTATATA
chr1:71445853-71445871
AGAGTGGAAGGCAGAGAGCAAATACAGCTA71445853GTTATTGTGGATGTTTCACTTTTGGACTAAGATTGGATAGGGGTGGATG
chr1:74082163-74082181
TATCCAGATACTTGAAAAGTCCTGTGTATT74082163GTTATCTAAGATGTTTCTGTTTTAGGGAGTACCTGAAGCCCCATAATGC
chr1:79324966-79324984
GAAACAAAGATGCTTTCTCATGGCATATTT79324966GTGATCTTAGATTTTCCACACCTCTCTGTTCATCATGGCTTTCAAATGA
chr1:82964332-82964350
TATCACCTTTCTGCTTTATCACGGATGAGA82964332GTTAACTTAGAAGTTTCAGAAAAAAAAACTAAAAATAAAATTATACTTT
chr1:87913902-87913920
ATTCTTTATAAATAAAATGAATTGTGCCAC87913902GCTAACTTAGATGTTTCAGAGAAACACTAACATATTTTTTTTAACTGAT
chr1:91824473-91824491
GGATGGAGCTTCTAGAGGAAGTAGCTGGCT91824473GTCATCTTTGCTGTTTCACAGTCTTCACTGGTGATATTTCCAGGTACGG
chr1:95770538-95770556
TAATACCACTGTGTGAGAACAGTGGGTGGA95770538GTAATCTTAGATGAGTCACTTTGATTTCTCACCTATAAAGAAATGGGTT
chr1:97333417-97333435
TCTCTTTTACACATTGAACTTTCGCTGAAT97333417GTTATTTTAGATGCTTCAGTCTCCAGCTTAAAAGCTACTGCTAAAGCAA
chr1:99863162-99863180
AAAAATAAACATTTAGTACATTGATTTTAA99863162ATTATCTTAAATGTTTCCCTCAAAATTTAAGGCAAGATTATAGAAAACA
chr1:100619966-100619984
CTATAAACTTGTAACAATGGCTGTAAATAT100619966TTTATCTTACATGTTTCTCATAGGCAATAGGTTGGTTATGGTACATACA
chr1:102268466-102268484
ATCCAAACTCAATGAAATGTTTGATATATA102268466GTTAGCTTATATGTTTCATAGAGTTATTAACATAAGTATTATTAAAGCT
chr1:104516337-104516355
TGTTTGAAGTTCACTAAGATTTTAAAATCT104516337GTAATTTTATATGTTTCACTCAAATTGGGAAGTTTTTGTCATTATTGCT
chr1:107252555-107252573
GAGGCTGAAGTCTCACACTATTATTGTGTG107252555GTTATCTAAGTTTTTTCACAGAGCAAGAAGAAGTTGTTTTACGAATCTG
chr1:108495579-108495597
CTAATCAGACTAAAAAATAACAGAAATTTC108495579GTTGTTTTAGATGTTTCATTTTAAATAGAACAACTTTCAGTTCAAAATA
chr1:118498077-118498095
ACGGGAAATAAATAGAAATTATAATTGATG118498077GTTATCTTATAGGTTTAACTATATCAAAGTTTTGATGGAAAATAATTTA
chr1:156135645-156135663
ACTCAATGGGCCACTTCAGCCTGGAAATTA156135645GTTATCTTAGTTCTTTCAGTTCTGAGTTTTCTTGAACTATATCTTCCTA
chr1:164057424-164057442
TGAATGAATATGGTTAAAAGCAAATGAACA164057424GTCATCATAGATGTTTCTCTCCCTGACTCGGTGACTGCAGGCTTTCAGA
chr1:169315037-169315055
TTTTAGTTGCATATATCTATCCAACTGCCT169315037TTTATCTTAGATGTTAGACAGCTCTAGTTTAACAAGCCCCAAGTTGAAA
chr1:174442691-174442709
ACCACGTGTGGCCCTTTCTTTCCTTAGGAT174442691GTTACCTTAGAGGTTTCTCTTGCTAGTTAATAGAAAGATAGTTTTGGGG
chr1:177297394-177297412
CTAACAATAGATTGTATACATGTTTTTATT177297394GTTATCTTAGATGATTCAGGGGAGCCAAAAAATTCTCAGAAGTCTTATC
chr1:180322488-180322506
TTAGTAAATACTTCTTGAGAATTTCTTTTT180322488GTCATTTTAGATGTTTTACTCTGTGATAGCCCATGTCACCTTACTGGTT
chr1:180797986-180798004
CTAACATTTAACACTTAGCCCTATTAGTCA180797986CTTATGTTAGATGTTTAACTTTGATCTAGTGGATCAAACTAGTAGAATA
chr1:181039260-181039278
CAGGTAAATCTCCCGTTTTTGGGGGCTTAT181039260GTTATCTAAGATGTGTAACTAACGTTTCTTTCCCATTGTGACTGTACCA
chr1:182907986-182908004
ATGTCTTGCTACTCTTTTAGCTATAATCCA182907986GTTATCTTATTTGCTTCACATATTATATATAGAGGAGGTCCACCTCTTC
chr1:193783696-193783714
AAAGGAGACAGTTTATACTCACAGTCTCTT193783696ATTATTTTAGATCTTTCACTTCCCTACTCTAAACTCATGGTTCAACAAC
chr1:197498897-197498915
TTTAAACATAATCTCAGATTATAGATTTAT197498897GTTATCTTATATTTTTCACTAAGTCTCCAGTATTCTATTCTAAAATAAA
chr1:220151482-220151500
ACAATGTGGTGTGAAAACTCAAGAATAAAA220151482TTAATCTCAGATGTTTCACTATTAGCTATAACAAACACAGCTAAGTGAT
chr1:227585128-227585146
GTTTTCGGTTCTTAACCATGCAAACACCAT227585128CTTATCTTGGATCTTTCACATATGCAGTTCATTTTCCTGAAATGCTGCA
chr2:73170-73188
TTTTCATAAATCCTCCCTGAAAATACATTT73170GTCATCTTAGCTGTGTCACTAAAGTATAATGCAGTGAGGGCAGGGCAAA
chr2:15482884-15482902
ATAAAGTTATACATATATCCATGTATCTAT15482884TTTATCATAGATGTTTCACATCTAATTTCTTTTACTTTCAAGAAATATA
chr2:28329296-28329314
CCTGGTTCAGAATTCAGTTTAGAATCATGT28329296GTGATTTTAGTTGTTTCACTAGTGTGTAATAGTTCCTCAGTTTGTCCTT
chr2:29995858-29995876
TTTGTGGAACGACGTGCTGGAGTTCCCACA29995858TTTATCTTTGTTGTTTCACTGTTGTCTTGCTTGTCAATGTAAACAAAAA
chr2:41023592-41023610
AGTTCTTTCTCTTTCTCGATGAATGTTTAG41023592GTTATTTTACATTTTTCACTGTTATTATTTAATTTACTTGATATTTCAA
chr2:41072397-41072415
ATTTGTCTTATTTGGCTTACTTGTCCCATA41072397ATTATTTTAGATGTTTGACTTTTTAAAATTAAACTCTTCATTTTGAGAT
chr2:46654281-46654299
GACAGATATTCCCAATAAAAATAAAATTCA46654281GTTATCTCCGATGTTTCATCAGCTTTAGCCATATATAAAACCACAGCTT
chr2:50652476-50652494
GTACAAGCCTTTATTTAACCTACACGTCTG50652476GATATCTGAGAAGTTTCACCTTATGACTTGTTTCAATTATAAACATCCA
chr2:50665463-50665481
AGCCCCAGATGGAGAAAACTAGGAGTGGGA50665463TTTATCTTACATGATTCACTGTAGACAGCCAAAGCAAAATGTCAACCAG
chr2:50925197-50925215
TTTTCTTCATAACACCTATCATTATCTGAA50925197ATCATCTTAGTTGTTTCACTTTAGAATCCTCCTTCTCTCATGAGAAAGT
chr2:56581885-56581903
AAGAAAGAGCATATTAAATAAATTATAGGT56581885GTTAGCTTAATTGTTTCACTACTTAGGGGCCTTCAATGGCTTGGTAAGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/hg19/3/-/nogap/GTGAAACATCTAAGATAAC
lang : en | db : hg19 | k : 3 | strand : - | nogap : true | query_string : GTGAAACATCTAAGATAAC | format : html | download : | debug : 

0.011 | 0.011 | search_start;
6.250 | 6.239 | search_minus_done; http://172.18.8.78:28018/match?q=GTTATCTTAGATGTTTCAC&k=3&no_gap=1&offset=0&limit=50
6.262 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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